MD12G1159000.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
23929200 .. 23932898
3699 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1159000.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGCTTCAGATCCGGCTTAAGAGTGTTACACCACCAGAGGGTGTTTCAGGGGCAAAACACTTGGCAGAAGAGACTGTGACTGTTGCATGCCCTGACCACCTTGTCCTTGCTGATCTTCCTGTGGCAAAGGGCATTGGTGCAGCAACCACCACTACTCTTGTCAAGACTGTAGGCCGCAGGTCTCGTCGGCAGCTTGGAGAACGTGTCCACTTTTGTGTTAGCTGCGATTTTCCAATTGCTATCTATGGACGCCTGAGCCCTTGTGAGCATGCCTTTTGTCTGGATTGTGCTAGGAGTTACTCAATTTGCTATCTTTGTGATGAACGGATCCAGAAGATTCAGACAATCAAAATGATGGAGGGGATCTTCATTTGTGCAGCACCTCACTGTCTGAAATCTTTTCTGAAGAGGGATGAATTTGAATCTCATATTCACGAGAACCATGCTTACCTTCTTCAGCTAAATGGAGACAAAATGGATGGAAATGAATCAGAATCTCGAAATACCAAACAATGTACAATATCTGAATCCACTGCTCGTGCTCCATCAAGGCCAGTATTTTCCCCTGGTTCAAATTCTCAGCTCCATGACCGCGAGGACAAAGCTCGGCTTCAACAGTCTAGAGAACAATCACTTCCAAGGCCAGTCATGCAGCCCAACCCAGCCTTTGGGCAAGTTCAGAATAACCCACCAGACCCCAGTCAGCCCCCAGGCTTTGACAGGCCTGCTCCCCACAATCTCTTCCATCAACAAAGCTATGATTCAATGGGTGCTCCAATGCAGGAATCTGGCCAGTTTTCCGATAAGCAGCAAGGAATTTTATCTGAGACTCCCTTTTCTGAATATCCACCCATGCATTCCATTCCGCCCCCCAATTATGAAATTCCTGTTAATTCCAGTCAAATGAGGATGCCCCTTCCATATGGCTTTCCTTTTCCCAGTGATGGATCCCAACAATTTTATGGTGCTCCCTATGAGATGGCACGACAGGATTCAGCCCCAGATGTTGGACCAGAACAGGGGTCGTTACTGGGTTTTGCCCCAGGTTCAGTTGGGAACATGAATTTTCCGGTGAGTTATCCGCAGTCTTGGAATGCAGGACAGGCTGGTGTTCCGTTTGAAGCATCAACAGGGGGTCAAGGAAATACAGATGGTTTCTCGAACTCTGCAGAGTCTCAAGGAAAAGCTGCATTTTACCAAGGAGAATATGGACGGAATCACGGGGGTTTGCCCTTCAATTCTCCGCAAATGACCAACAAAGCGATGGAAGCAGTGCAGGGTGGTAGCACTATGGATCCTAGGGACGGCAAAGGTGTTTTAGCAGCACAGCCCATGTCACTTCCTCCGCCGCCTCCACCCCCACATCACATGTCACAACTCAAACGTAAGTTTTATCAAGGCGATACGGGACGAGACGGATAG

Protein Analysis

474

Amino Acids

51.68

Weight (kDa)

6.21

Isoelectric Point (pI)

66.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012517)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 168
AccB7I CCANNNNNTGG 2 cut(s) 668, 1007
AccII CGCG 1 cut(s) 594
AciI CCGC 7 cut(s) 175, 592, 866, 1082, 1244, 1346, 1349
AclWI GGATC 8 cut(s) 4, 322, 335, 371, 942, 955, 1289, 1302
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 5 cut(s) 416, 574, 816, 882, 1063
AcuI CTGAAG 2 cut(s) 425, 440
AcyI GRCGYC 1 cut(s) 250
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 6 cut(s) 38, 668, 944, 1007, 1019, 1304
AflII CTTAAG 1 cut(s) 17
AflIII ACRYGT 2 cut(s) 202, 1368
AgsI TTSAA 6 cut(s) 422, 573, 614, 765, 1121, 1237
AjnI CCWGG 3 cut(s) 565, 709, 1042
AleI CACNNNNGTG 1 cut(s) 213
AluBI AGCT 7 cut(s) 193, 222, 460, 583, 605, 756, 1187
AluI AGCT 7 cut(s) 193, 222, 460, 583, 605, 756, 1187
Alw21I GWGCWC 3 cut(s) 544, 775, 970
Alw26I GTCTC 6 cut(s) 65, 186, 462, 821, 1179, 1407
AlwI GGATC 8 cut(s) 4, 322, 335, 371, 942, 955, 1289, 1302
AoxI GGCC 5 cut(s) 172, 551, 641, 722, 790
ApeKI GCWGC 8 cut(s) 140, 190, 222, 377, 652, 808, 1187, 1322
ApoI RAATTY 5 cut(s) 416, 574, 816, 882, 1063
AspA2I CCTAGG 1 cut(s) 1298
AspS9I GGNCC 1 cut(s) 1010
AsuHPI GGTGA 1 cut(s) 1084
AvaII GGWCC 1 cut(s) 1010
AvrII CCTAGG 1 cut(s) 1298
BalI TGGCCA 1 cut(s) 792
BamHI GGATCC 3 cut(s) 327, 947, 1294
BanII GRGCYC 1 cut(s) 260
BauI CACGAG 2 cut(s) 434, 537
Bbv12I GWGCWC 3 cut(s) 544, 775, 970
BbvI GCAGC 8 cut(s) 152, 202, 209, 389, 664, 820, 1174, 1334
BccI CCATC 8 cut(s) 349, 473, 553, 753, 938, 973, 1145, 1258
BceAI ACGGC 1 cut(s) 1321
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BciT130I CCWGG 3 cut(s) 567, 711, 1044
BcoDI GTCTC 6 cut(s) 65, 186, 462, 821, 1179, 1407
BfaI CTAG 3 cut(s) 291, 621, 1299
BfmI CTRYAG 2 cut(s) 168, 1167
BfrI CTTAAG 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 168
BlnI CCTAGG 1 cut(s) 1298
Bme1390I CCNGG 3 cut(s) 567, 711, 1044
Bme18I GGWCC 1 cut(s) 1010
BmgT120I GGNCC 1 cut(s) 1010
BmiI GGNNCC 3 cut(s) 329, 949, 1296
BmrFI CCNGG 3 cut(s) 567, 711, 1044
BmrI ACTGGG 3 cut(s) 693, 933, 1040
BmsI GCATC 2 cut(s) 900, 1133
BmuI ACTGGG 3 cut(s) 693, 933, 1040
BoxI GACNNNNGTC 1 cut(s) 699
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 1161
BsaHI GRCGYC 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 6 cut(s) 565, 638, 709, 1042, 1198, 1298
BsaWI WCCGGW 1 cut(s) 1069
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 6 cut(s) 38, 668, 944, 1007, 1019, 1304
Bse1I ACTGG 7 cut(s) 554, 644, 699, 793, 897, 939, 1035
BseBI CCWGG 3 cut(s) 567, 711, 1044
BseDI CCNNGG 6 cut(s) 565, 638, 709, 1042, 1198, 1298
BseGI GGATG 3 cut(s) 418, 484, 915
BseLI CCNNNNNNNGG 6 cut(s) 38, 668, 944, 1007, 1019, 1304
BseMII CTCAG 3 cut(s) 245, 593, 816
BseNI ACTGG 7 cut(s) 554, 644, 699, 793, 897, 939, 1035
BseXI GCAGC 8 cut(s) 152, 202, 209, 389, 664, 820, 1174, 1334
BseYI CCCAGC 1 cut(s) 661
BsgI GTGCAG 3 cut(s) 159, 396, 1295
Bsh1236I CGCG 1 cut(s) 594
BshFI GGCC 5 cut(s) 174, 553, 643, 724, 792
BsiHKAI GWGCWC 3 cut(s) 544, 775, 970
BsiSI CCGG 2 cut(s) 13, 1070
BslFI GGGAC 1 cut(s) 1316
BslI CCNNNNNNNGG 6 cut(s) 38, 668, 944, 1007, 1019, 1304
BsmAI GTCTC 6 cut(s) 65, 186, 462, 821, 1179, 1407
BsmBI CGTCTC 1 cut(s) 1407
BsmFI GGGAC 1 cut(s) 1316
BsmI GAATGC 2 cut(s) 856, 1099
BsnI GGCC 5 cut(s) 174, 553, 643, 724, 792
Bso31I GGTCTC 1 cut(s) 186
Bsp1286I GDGCHC 4 cut(s) 260, 544, 775, 970
Bsp1407I TGTACA 1 cut(s) 515
Bsp143I GATC 6 cut(s) 9, 112, 327, 363, 947, 1294
BspACI CCGC 7 cut(s) 175, 592, 866, 1082, 1244, 1346, 1349
BspANI GGCC 5 cut(s) 174, 553, 643, 724, 792
BspCNI CTCAG 3 cut(s) 246, 592, 817
BspFNI CGCG 1 cut(s) 594
BspLI GGNNCC 3 cut(s) 329, 949, 1296
BspMAI CTGCAG 1 cut(s) 1171
BspMI ACCTGC 1 cut(s) 168
BspPI GGATC 8 cut(s) 4, 322, 335, 371, 942, 955, 1289, 1302
BspTI CTTAAG 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 515
BsrI ACTGG 7 cut(s) 554, 644, 699, 793, 897, 939, 1035
BssECI CCNNGG 6 cut(s) 565, 638, 709, 1042, 1198, 1298
BssMI GATC 6 cut(s) 9, 112, 327, 363, 947, 1294
BssNI GRCGYC 1 cut(s) 250
BssSI CACGAG 2 cut(s) 434, 537
BssT1I CCWWGG 3 cut(s) 638, 1198, 1298
Bst2BI CACGAG 2 cut(s) 434, 537
Bst2UI CCWGG 3 cut(s) 567, 711, 1044
Bst4CI ACNGT 5 cut(s) 76, 82, 169, 389, 618
Bst6I CTCTTC 3 cut(s) 63, 401, 746
BstACI GRCGYC 1 cut(s) 250
BstAFI CTTAAG 1 cut(s) 17
BstAUI TGTACA 1 cut(s) 515
BstC8I GCNNGC 3 cut(s) 88, 270, 726
BstDEI CTNAG 3 cut(s) 254, 579, 825
BstF5I GGATG 3 cut(s) 418, 484, 915
BstFNI CGCG 1 cut(s) 594
BstKTI GATC 6 cut(s) 12, 115, 330, 366, 950, 1297
BstMAI GTCTC 6 cut(s) 65, 186, 462, 821, 1179, 1407
BstMBI GATC 6 cut(s) 9, 112, 327, 363, 947, 1294
BstMWI GCNNNNNNNGC 3 cut(s) 649, 1103, 1268
BstNI CCWGG 3 cut(s) 567, 711, 1044
BstNSI RCATGY 3 cut(s) 90, 272, 1372
BstPAI GACNNNNGTC 1 cut(s) 699
BstSCI CCNGG 3 cut(s) 565, 709, 1042
BstSFI CTRYAG 2 cut(s) 168, 1167
BstUI CGCG 1 cut(s) 594
BstV1I GCAGC 8 cut(s) 152, 202, 209, 389, 664, 820, 1174, 1334
BstX2I RGATCY 5 cut(s) 9, 327, 363, 947, 1294
BstYI RGATCY 5 cut(s) 9, 327, 363, 947, 1294
BsuRI GGCC 5 cut(s) 174, 553, 643, 724, 792
BtgZI GCGATG 1 cut(s) 1277
BtsCI GGATG 3 cut(s) 418, 484, 915
BtsI GCAGTG 2 cut(s) 531, 1278
BtsIMutI CAGTG 4 cut(s) 385, 531, 946, 1278
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 3 cut(s) 88, 270, 726
Cfr13I GGNCC 1 cut(s) 1010
CseI GACGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 516
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 9 cut(s) 87, 269, 443, 587, 649, 853, 1060, 1333, 1369
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 3 cut(s) 254, 579, 825
DpnI GATC 6 cut(s) 11, 114, 329, 365, 949, 1296
DpnII GATC 6 cut(s) 9, 112, 327, 363, 947, 1294
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 3 cut(s) 63, 401, 746
EarI CTCTTC 3 cut(s) 63, 401, 746
EciI GGCGGA 2 cut(s) 855, 1335
Eco130I CCWWGG 3 cut(s) 638, 1198, 1298
Eco147I AGGCCT 1 cut(s) 724
Eco24I GRGCYC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 1010
Eco57I CTGAAG 2 cut(s) 425, 440
EcoRII CCWGG 3 cut(s) 565, 709, 1042
EcoT14I CCWWGG 3 cut(s) 638, 1198, 1298
EcoT22I ATGCAT 1 cut(s) 858
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 3 cut(s) 638, 1198, 1298
Esp3I CGTCTC 1 cut(s) 1407
FaeI CATG 9 cut(s) 90, 272, 446, 590, 652, 856, 1063, 1336, 1372
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 1 cut(s) 1316
FatI CATG 9 cut(s) 86, 268, 442, 586, 648, 852, 1059, 1332, 1368
FauNDI CATATG 1 cut(s) 922
FokI GGATG 3 cut(s) 425, 491, 922
FriOI GRGCYC 1 cut(s) 260
FspBI CTAG 3 cut(s) 291, 621, 1299
GsaI CCCAGC 1 cut(s) 665
HaeIII GGCC 5 cut(s) 174, 553, 643, 724, 792
HapII CCGG 2 cut(s) 13, 1070
HgaI GACGC 1 cut(s) 258
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 9 cut(s) 90, 272, 446, 590, 652, 856, 1063, 1336, 1372
HpaII CCGG 2 cut(s) 13, 1070
HphI GGTGA 1 cut(s) 1084
Hpy166II GTNNAC 1 cut(s) 208
Hpy188III TCNNGA 7 cut(s) 163, 281, 331, 434, 498, 621, 1159
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 3 cut(s) 461, 926, 1243
HpyCH4III ACNGT 5 cut(s) 76, 82, 169, 389, 618
HpyCH4IV ACGT 2 cut(s) 202, 1384
HpyF10VI GCNNNNNNNGC 3 cut(s) 649, 1103, 1268
HpyF3I CTNAG 3 cut(s) 254, 579, 825
HpySE526I ACGT 2 cut(s) 202, 1384
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 9 cut(s) 90, 272, 446, 590, 652, 856, 1063, 1336, 1372
Kzo9I GATC 6 cut(s) 9, 112, 327, 363, 947, 1294
LmnI GCTCC 5 cut(s) 547, 588, 733, 778, 973
Lsp1109I GCAGC 8 cut(s) 152, 202, 209, 389, 664, 820, 1174, 1334
LweI GCATC 2 cut(s) 900, 1133
MaeI CTAG 3 cut(s) 291, 621, 1299
MaeII ACGT 2 cut(s) 202, 1384
MaeIII GTNAC 6 cut(s) 25, 76, 296, 1026, 1335, 1371
MalI GATC 6 cut(s) 11, 114, 329, 365, 949, 1296
MboI GATC 6 cut(s) 9, 112, 327, 363, 947, 1294
MboII GAAGA 7 cut(s) 80, 107, 346, 358, 418, 446, 733
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 5 cut(s) 9, 327, 363, 947, 1294
MhlI GDGCHC 4 cut(s) 260, 544, 775, 970
MlsI TGGCCA 1 cut(s) 792
MluNI TGGCCA 1 cut(s) 792
MlyI GAGTC 2 cut(s) 823, 1181
MmeI TCCRAC 1 cut(s) 988
MnlI CCTC 8 cut(s) 31, 352, 393, 402, 589, 900, 1353, 1362
Mox20I TGGCCA 1 cut(s) 792
Mph1103I ATGCAT 1 cut(s) 858
MscI TGGCCA 1 cut(s) 792
MseI TTAA 2 cut(s) 18, 891
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 792
MspCI CTTAAG 1 cut(s) 17
MspI CCGG 2 cut(s) 13, 1070
MspR9I CCNGG 3 cut(s) 567, 711, 1044
MunI CAATTG 1 cut(s) 234
Mva1269I GAATGC 2 cut(s) 856, 1099
MvaI CCWGG 3 cut(s) 567, 711, 1044
MvnI CGCG 1 cut(s) 594
MwoI GCNNNNNNNGC 3 cut(s) 649, 1103, 1268
NdeI CATATG 1 cut(s) 922
NdeII GATC 6 cut(s) 9, 112, 327, 363, 947, 1294
NlaIII CATG 9 cut(s) 90, 272, 446, 590, 652, 856, 1063, 1336, 1372
NlaIV GGNNCC 3 cut(s) 329, 949, 1296
NmeAIII GCCGAG 1 cut(s) 586
NmuCI GTSAC 3 cut(s) 76, 1335, 1371
NsiI ATGCAT 1 cut(s) 858
NspI RCATGY 3 cut(s) 90, 272, 1372
OliI CACNNNNGTG 1 cut(s) 213
PaeI GCATGC 2 cut(s) 90, 272
PceI AGGCCT 1 cut(s) 724
PciI ACATGT 1 cut(s) 1368
PctI GAATGC 2 cut(s) 856, 1099
PfeI GAWTC 9 cut(s) 337, 422, 488, 494, 527, 761, 785, 992, 1216
PflMI CCANNNNNTGG 2 cut(s) 668, 1007
PleI GAGTC 2 cut(s) 823, 1180
PpsI GAGTC 2 cut(s) 823, 1180
PscI ACATGT 1 cut(s) 1368
PshAI GACNNNNGTC 1 cut(s) 699
Psp6I CCWGG 3 cut(s) 565, 709, 1042
PspFI CCCAGC 1 cut(s) 661
PspGI CCWGG 3 cut(s) 565, 709, 1042
PspN4I GGNNCC 3 cut(s) 329, 949, 1296
PspPI GGNCC 1 cut(s) 1010
PsrI GAACNNNNNNTAC 2 cut(s) 431, 463
PstI CTGCAG 1 cut(s) 1171
PsuI RGATCY 5 cut(s) 9, 327, 363, 947, 1294
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 2 cut(s) 18, 891
Sau3AI GATC 6 cut(s) 9, 112, 327, 363, 947, 1294
Sau96I GGNCC 1 cut(s) 1010
SchI GAGTC 2 cut(s) 823, 1181
ScrFI CCNGG 3 cut(s) 567, 711, 1044
SduI GDGCHC 4 cut(s) 260, 544, 775, 970
SfaNI GCATC 2 cut(s) 900, 1133
SfcI CTRYAG 2 cut(s) 168, 1167
SinI GGWCC 1 cut(s) 1010
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 17, 1176
SmoI CTYRAG 2 cut(s) 17, 1176
SphI GCATGC 2 cut(s) 90, 272
SseBI AGGCCT 1 cut(s) 724
SsiI CCGC 7 cut(s) 175, 592, 866, 1082, 1244, 1346, 1349
SspMI CTAG 3 cut(s) 291, 621, 1299
StuI AGGCCT 1 cut(s) 724
StyD4I CCNGG 3 cut(s) 565, 709, 1042
StyI CCWWGG 3 cut(s) 638, 1198, 1298
TaaI ACNGT 5 cut(s) 76, 82, 169, 389, 618
TaiI ACGT 2 cut(s) 205, 1387
TaqI TCGA 2 cut(s) 499, 1160
TatI WGTACW 1 cut(s) 515
TauI GCSGC 2 cut(s) 177, 1351
TfiI GAWTC 9 cut(s) 337, 422, 488, 494, 527, 761, 785, 992, 1216
Tru1I TTAA 2 cut(s) 18, 891
Tru9I TTAA 2 cut(s) 18, 891
TscAI CASTG 4 cut(s) 392, 538, 946, 1278
TseFI GTSAC 3 cut(s) 76, 1335, 1371
TseI GCWGC 8 cut(s) 140, 190, 222, 377, 652, 808, 1187, 1322
Tsp45I GTSAC 3 cut(s) 76, 1335, 1371
TspDTI ATGAA 6 cut(s) 336, 358, 429, 501, 894, 1076
TspGWI ACGGA 3 cut(s) 340, 1104, 1228
TspRI CASTG 4 cut(s) 392, 538, 946, 1278
Van91I CCANNNNNTGG 2 cut(s) 668, 1007
Vha464I CTTAAG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 1010
XapI RAATTY 5 cut(s) 416, 574, 816, 882, 1063
XbaI TCTAGA 1 cut(s) 620
XceI RCATGY 3 cut(s) 90, 272, 1372
XcmI CCANNNNNNNNNTGG 3 cut(s) 959, 1205, 1261
XmaJI CCTAGG 1 cut(s) 1298
XspI CTAG 3 cut(s) 291, 621, 1299
Zsp2I ATGCAT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.