Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012517

Physical Location & Seq

Genomic Coordinates Reverse (-)

11056106 .. 11064566

Gene Structure 8461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG130700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAGGGGATCTTCATTTGTGCTGCCCCTCACTGTCTCAAATCTTTTCTAAAGAGGAGTGAATTTGAATCTCACATCCATGAGACACACGCGCACCTTCTTCAGCCAAATGCGGAGAAAATGGATGGAAATGAATCTGAAGCCCGGAGTAAAAACCAAGTAACGCCATCTGAATCCACCGCTCGTGCTCCACCAAGGCCAGTCTTTTCTCCTAGTTCAAATTCCCAGTTCCATGACCGTGATGACAAAGCTCGTCTTCAACGAGAACAATCGCTTCCAAGGCCAGTCATGCAGCCTACACCACCTCCAGGTTTTGGGCAAATTCAGAATAATCCACCAGATCTCAGCCGACCGCCAGGCTTTGACAGGCCTGTTCCCCAGAATCTCTACCATCAACAAAGCTTTGATTCATCTGGTGCTCCCATACCGGAGTCTGGCCAGTTTTCAGATAAGCAGCAAGGAATGATATCCGAGACTCCCTTTTCTGAATATCCACCCATGCATTCTATTCAGCCTCCCAATTATGCAGTTCCCATGAATTCCAATCAAGTACAGATGATGCCCTCCCTTCAGTATGGCTTTCCTTTCCCAGTGGATGGATCTCAACCATTTTATGGTGCTCCCTATCAAATGGTACGACAGGATTCTGGACAGGATATGGGACAAGAACAGGGATCGTTGTTGGGTTTTCCCCCAGGTTCAGTACCTAACATGAATTTTGCAGCTGGTTATCCGCAGTCTTGGAATGCAGGACAGGCTGGTGTTCCTTTTGAACAAGCTACACCAGGTGGTCAAGGAACTGCAGATGGTTTCCCCAACTCCTCAGATCCTCAAGGAAATGCCACATATTATCAAGGCGGCATGCCTTTCAATCCTCAGCAGATGACAAACAAAGCAATGGAACAACCACCCCAGGGTGGTAATGCTATGGATCCGAGGGATAGCAAAGGTATATTAGCATCACAGCCCATGTCGCTTCCTCCGCCTCCCCCACCGCCGCAGCTCAAACGCAAGTTTTATCATGGTGACACAGGTCGAGATGGCCAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006464 GO:0006725 GO:0006807 GO:0007162 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030100 GO:0030155 GO:0030334 GO:0030335 GO:0032259 GO:0032446 GO:0032879 GO:0032991 GO:0034641 GO:0034708 GO:0036211 GO:0036396 GO:0040012 GO:0040017 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045293 GO:0045807 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051270 GO:0051272 GO:0060627 GO:0065007 GO:0070647 GO:0071704 GO:0080009 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:2000145 GO:2000147

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

38.25

Weight (kDa)

5.57

Isoelectric Point (pI)

77.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01160 AT5G01160
fragaria_vesca	FvH4_6g12190 FvH4_6g12190
malus_domestica	MD04G1145200.v1.1 MD12G1159000.v1.1
prunus_persica	Prupe.6G269500_v2.0.a1
pyrus_communis	pycom04g13140 pycom12g15090
rosa_chinensis	RchiOBHm_Chr3g0463991
rosa_laevigata	RLG00000024729
rosa_multiflora	Rmu_sc0006492.1_g000009
rosa_roxburghii	Rroxscaffold_6G00416080
rosa_rugosa	Rorug03G0069900
rosa_samantha	Rh3AG126800 Rh3BG130700 Rh3CG133300 Rh3DG132200
rosa_wichuraiana	Rw3G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	314, 596, 614
AccBSI	CCGCTC	1 cut(s)	182
AccII	CGCG	1 cut(s)	92
AciI	CCGC	8 cut(s)	113, 180, 353, 734, 858, 983, 995, 998
AclWI	GGATC	6 cut(s)	17, 607, 682, 821, 926, 939
AcoI	YGGCCR	2 cut(s)	436, 1042
AcsI	RAATTY	5 cut(s)	62, 220, 321, 538, 715
AcuI	CTGAAG	3 cut(s)	86, 159, 554
AdeI	CACNNNGTG	1 cut(s)	788
AfaI	GTAC	3 cut(s)	552, 636, 705
AfiI	CCNNNNNNNGG	7 cut(s)	308, 314, 434, 596, 614, 914, 917
AgsI	TTSAA	5 cut(s)	68, 219, 260, 773, 871
AjnI	CCWGG	5 cut(s)	307, 355, 694, 784, 912
AluBI	AGCT	6 cut(s)	251, 402, 725, 779, 1003, 1050
AluI	AGCT	6 cut(s)	251, 402, 725, 779, 1003, 1050
Alw21I	GWGCWC	3 cut(s)	190, 421, 622
Alw26I	GTCTC	3 cut(s)	41, 77, 467
AlwI	GGATC	6 cut(s)	17, 607, 682, 821, 926, 939
AoxI	GGCC	5 cut(s)	197, 281, 368, 436, 1042
ApeKI	GCWGC	5 cut(s)	23, 292, 454, 722, 1000
ApoI	RAATTY	5 cut(s)	62, 220, 321, 538, 715
AspLEI	GCGC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	1037
BalI	TGGCCA	2 cut(s)	438, 1044
BamHI	GGATCC	1 cut(s)	931
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	3 cut(s)	190, 421, 622
BbvCI	CCTCAGC	1 cut(s)	876
BbvI	GCAGC	5 cut(s)	10, 304, 466, 734, 1012
BccI	CCATC	6 cut(s)	119, 175, 399, 590, 800, 1034
BciT130I	CCWGG	5 cut(s)	309, 357, 696, 786, 914
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	3 cut(s)	41, 77, 467
BfaI	CTAG	2 cut(s)	213, 1051
BfmI	CTRYAG	1 cut(s)	801
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	7 cut(s)	24, 293, 455, 723, 859, 998, 1001
BlsI	GCNGC	7 cut(s)	25, 294, 456, 724, 860, 999, 1002
Bme1390I	CCNGG	6 cut(s)	145, 309, 357, 696, 786, 914
BmiI	GGNNCC	1 cut(s)	933
BmrFI	CCNGG	6 cut(s)	145, 309, 357, 696, 786, 914
BmrI	ACTGGG	2 cut(s)	220, 584
BmsI	GCATC	2 cut(s)	549, 968
BmuI	ACTGGG	2 cut(s)	220, 584
BoxI	GACNNNNGTC	1 cut(s)	1032
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	816
BpuMI	CCSGG	1 cut(s)	145
BsaJI	CCNNGG	6 cut(s)	194, 278, 694, 912, 913, 935
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	7 cut(s)	308, 314, 434, 596, 614, 914, 917
Bse1I	ACTGG	5 cut(s)	200, 226, 284, 439, 590
Bse3DI	GCAATG	1 cut(s)	903
BseBI	CCWGG	5 cut(s)	309, 357, 696, 786, 914
BseDI	CCNNGG	6 cut(s)	194, 278, 694, 912, 913, 935
BseGI	GGATG	3 cut(s)	75, 130, 601
BseLI	CCNNNNNNNGG	7 cut(s)	308, 314, 434, 596, 614, 914, 917
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	3 cut(s)	358, 837, 890
BseNI	ACTGG	5 cut(s)	200, 226, 284, 439, 590
BseRI	GAGGAG	2 cut(s)	70, 811
BseXI	GCAGC	5 cut(s)	10, 304, 466, 734, 1012
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	5 cut(s)	199, 283, 370, 438, 1044
BsiEI	CGRYCG	1 cut(s)	353
BsiHKAI	GWGCWC	3 cut(s)	190, 421, 622
BsiSI	CCGG	2 cut(s)	145, 428
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	7 cut(s)	308, 314, 434, 596, 614, 914, 917
BsmAI	GTCTC	3 cut(s)	41, 77, 467
BsmFI	GGGAC	1 cut(s)	675
BsmI	GAATGC	2 cut(s)	502, 751
BsnI	GGCC	5 cut(s)	199, 283, 370, 438, 1044
Bsp1286I	GDGCHC	3 cut(s)	190, 421, 622
Bsp143I	GATC	6 cut(s)	9, 340, 599, 674, 826, 931
BspACI	CCGC	8 cut(s)	113, 180, 353, 734, 858, 983, 995, 998
BspANI	GGCC	5 cut(s)	199, 283, 370, 438, 1044
BspCNI	CTCAG	3 cut(s)	357, 836, 889
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	933
BspMAI	CTGCAG	1 cut(s)	805
BspPI	GGATC	6 cut(s)	17, 607, 682, 821, 926, 939
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	903
BsrI	ACTGG	5 cut(s)	200, 226, 284, 439, 590
BssECI	CCNNGG	6 cut(s)	194, 278, 694, 912, 913, 935
BssMI	GATC	6 cut(s)	9, 340, 599, 674, 826, 931
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	194, 278
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	5 cut(s)	309, 357, 696, 786, 914
Bst4CI	ACNGT	2 cut(s)	35, 239
BstC8I	GCNNGC	1 cut(s)	863
BstDEI	CTNAG	3 cut(s)	344, 823, 876
BstF5I	GGATG	3 cut(s)	75, 130, 601
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	6 cut(s)	12, 343, 602, 677, 829, 934
BstMAI	GTCTC	3 cut(s)	41, 77, 467
BstMBI	GATC	6 cut(s)	9, 340, 599, 674, 826, 931
BstMCI	CGRYCG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	5 cut(s)	280, 289, 755, 973, 982
BstNI	CCWGG	5 cut(s)	309, 357, 696, 786, 914
BstNSI	RCATGY	1 cut(s)	865
BstPAI	GACNNNNGTC	1 cut(s)	1032
BstSCI	CCNGG	6 cut(s)	143, 307, 355, 694, 784, 912
BstSFI	CTRYAG	1 cut(s)	801
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	5 cut(s)	10, 304, 466, 734, 1012
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	5 cut(s)	9, 340, 599, 826, 931
BstYI	RGATCY	5 cut(s)	9, 340, 599, 826, 931
BsuRI	GGCC	5 cut(s)	199, 283, 370, 438, 1044
BtsCI	GGATG	3 cut(s)	75, 130, 601
BtsIMutI	CAGTG	2 cut(s)	31, 597
Cac8I	GCNNGC	1 cut(s)	863
CfoI	GCGC	1 cut(s)	94
CsiI	ACCWGGT	1 cut(s)	784
Csp6I	GTAC	3 cut(s)	551, 635, 704
CviAII	CATG	9 cut(s)	80, 233, 289, 499, 535, 712, 862, 970, 1022
CviQI	GTAC	3 cut(s)	551, 635, 704
DdeI	CTNAG	3 cut(s)	344, 823, 876
DpnI	GATC	6 cut(s)	11, 342, 601, 676, 828, 933
DpnII	GATC	6 cut(s)	9, 340, 599, 674, 826, 931
DraIII	CACNNNGTG	1 cut(s)	788
EaeI	YGGCCR	2 cut(s)	436, 1042
EciI	GGCGGA	1 cut(s)	972
Eco130I	CCWWGG	2 cut(s)	194, 278
Eco147I	AGGCCT	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	468
Eco57I	CTGAAG	3 cut(s)	86, 159, 554
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	5 cut(s)	307, 355, 694, 784, 912
EcoRV	GATATC	1 cut(s)	468
EcoT14I	CCWWGG	2 cut(s)	194, 278
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	2 cut(s)	194, 278
FaeI	CATG	9 cut(s)	83, 236, 292, 502, 538, 715, 865, 973, 1025
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	9 cut(s)	79, 232, 288, 498, 534, 711, 861, 969, 1021
Fnu4HI	GCNGC	7 cut(s)	24, 293, 455, 723, 859, 998, 1001
FokI	GGATG	3 cut(s)	62, 137, 608
Fsp4HI	GCNGC	7 cut(s)	24, 293, 455, 723, 859, 998, 1001
FspBI	CTAG	2 cut(s)	213, 1051
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	7 cut(s)	24, 293, 455, 723, 859, 998, 1001
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	5 cut(s)	199, 283, 370, 438, 1044
HapII	CCGG	2 cut(s)	145, 428
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	9 cut(s)	83, 236, 292, 502, 538, 715, 865, 973, 1025
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	8 cut(s)	68, 134, 173, 382, 407, 431, 475, 644
HpaII	CCGG	2 cut(s)	145, 428
HphI	GGTGA	1 cut(s)	1037
Hpy188I	TCNGA	8 cut(s)	139, 172, 327, 448, 472, 487, 826, 936
Hpy188III	TCNNGA	2 cut(s)	648, 1037
HpyAV	CCTTC	2 cut(s)	107, 578
HpyCH4III	ACNGT	2 cut(s)	35, 239
HpyCH4V	TGCA	6 cut(s)	292, 502, 527, 722, 749, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	280, 289, 755, 973, 982
HpyF3I	CTNAG	3 cut(s)	344, 823, 876
Hsp92II	CATG	9 cut(s)	83, 236, 292, 502, 538, 715, 865, 973, 1025
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	6 cut(s)	9, 340, 599, 674, 826, 931
LmnI	GCTCC	3 cut(s)	193, 424, 625
Lsp1109I	GCAGC	5 cut(s)	10, 304, 466, 734, 1012
LweI	GCATC	2 cut(s)	549, 968
MabI	ACCWGGT	1 cut(s)	784
MaeI	CTAG	2 cut(s)	213, 1051
MaeIII	GTNAC	2 cut(s)	160, 1025
MalI	GATC	6 cut(s)	11, 342, 601, 676, 828, 933
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	6 cut(s)	9, 340, 599, 674, 826, 931
MboII	GAAGA	3 cut(s)	4, 92, 248
MflI	RGATCY	5 cut(s)	9, 340, 599, 826, 931
MhlI	GDGCHC	3 cut(s)	190, 421, 622
MlsI	TGGCCA	2 cut(s)	438, 1044
MluCI	AATT	6 cut(s)	62, 220, 321, 520, 538, 715
MluNI	TGGCCA	2 cut(s)	438, 1044
MlyI	GAGTC	2 cut(s)	440, 469
Mox20I	TGGCCA	2 cut(s)	438, 1044
Mph1103I	ATGCAT	1 cut(s)	504
MscI	TGGCCA	2 cut(s)	438, 1044
MslI	CAYNNNNRTG	2 cut(s)	78, 237
Msp20I	TGGCCA	2 cut(s)	438, 1044
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	2 cut(s)	145, 428
MspR9I	CCNGG	6 cut(s)	145, 309, 357, 696, 786, 914
Mva1269I	GAATGC	2 cut(s)	502, 751
MvaI	CCWGG	5 cut(s)	309, 357, 696, 786, 914
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	5 cut(s)	280, 289, 755, 973, 982
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	6 cut(s)	9, 340, 599, 674, 826, 931
NlaIII	CATG	9 cut(s)	83, 236, 292, 502, 538, 715, 865, 973, 1025
NlaIV	GGNNCC	1 cut(s)	933
NmuCI	GTSAC	1 cut(s)	1025
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	1 cut(s)	865
PaeI	GCATGC	1 cut(s)	865
PasI	CCCWGGG	1 cut(s)	913
PceI	AGGCCT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PctI	GAATGC	2 cut(s)	502, 751
PfeI	GAWTC	6 cut(s)	68, 134, 173, 382, 407, 644
PflMI	CCANNNNNTGG	3 cut(s)	314, 596, 614
PkrI	GCNGC	7 cut(s)	25, 294, 456, 724, 860, 999, 1002
PleI	GAGTC	2 cut(s)	439, 469
PpsI	GAGTC	2 cut(s)	439, 469
PshAI	GACNNNNGTC	1 cut(s)	1032
Psp6I	CCWGG	5 cut(s)	307, 355, 694, 784, 912
PspGI	CCWGG	5 cut(s)	307, 355, 694, 784, 912
PspN4I	GGNNCC	1 cut(s)	933
PstI	CTGCAG	1 cut(s)	805
PsuI	RGATCY	5 cut(s)	9, 340, 599, 826, 931
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	3 cut(s)	552, 636, 705
RsaNI	GTAC	3 cut(s)	551, 635, 704
RseI	CAYNNNNRTG	2 cut(s)	78, 237
SatI	GCNGC	7 cut(s)	24, 293, 455, 723, 859, 998, 1001
Sau3AI	GATC	6 cut(s)	9, 340, 599, 674, 826, 931
SchI	GAGTC	2 cut(s)	440, 469
ScrFI	CCNGG	6 cut(s)	145, 309, 357, 696, 786, 914
SduI	GDGCHC	3 cut(s)	190, 421, 622
SexAI	ACCWGGT	1 cut(s)	784
SfaNI	GCATC	2 cut(s)	549, 968
SfcI	CTRYAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	2 cut(s)	78, 237
SmlI	CTYRAG	1 cut(s)	831
SmoI	CTYRAG	1 cut(s)	831
SphI	GCATGC	1 cut(s)	865
Sse9I	AATT	6 cut(s)	62, 220, 321, 520, 538, 715
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	8 cut(s)	113, 180, 353, 734, 858, 983, 995, 998
SspMI	CTAG	2 cut(s)	213, 1051
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	6 cut(s)	143, 307, 355, 694, 784, 912
StyI	CCWWGG	2 cut(s)	194, 278
TaaI	ACNGT	2 cut(s)	35, 239
TaqI	TCGA	1 cut(s)	1036
TasI	AATT	6 cut(s)	62, 220, 321, 520, 538, 715
TatI	WGTACW	1 cut(s)	550
TauI	GCSGC	2 cut(s)	861, 1000
TfiI	GAWTC	6 cut(s)	68, 134, 173, 382, 407, 644
TscAI	CASTG	2 cut(s)	38, 597
TseFI	GTSAC	1 cut(s)	1025
TseI	GCWGC	5 cut(s)	23, 292, 454, 722, 1000
Tsp45I	GTSAC	1 cut(s)	1025
TspDTI	ATGAA	5 cut(s)	4, 147, 399, 551, 728
TspRI	CASTG	2 cut(s)	38, 597
Van91I	CCANNNNNTGG	3 cut(s)	314, 596, 614
XapI	RAATTY	5 cut(s)	62, 220, 321, 538, 715
XceI	RCATGY	1 cut(s)	865
XspI	CTAG	2 cut(s)	213, 1051
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.