AT5G02010

exchange factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
383153 .. 385910
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02010.1

Sequence Viewer

Length: 1641 bp
ATGGATGGTTCGTCGGAAAATTTGCCAGAAGTGGAAGAGAAAGGTAGAGAAAGCAGTTGCTGCAGCTCGGAAACAACCAGACAAGAGGAGGAAGAACAAAGCCCTAGCTGTACGGAGGATTTCACGGCTTCTCCGGTTTCATCTCGTTGGTCTGTGAAGAACATCGATGGAGAGAAGAAGAAGATTCGTTCGGATTCAAGAGTTTCAGAGGTTGAGATGATGAAGGAAAGATTTTCGAAACTGCTGCTTGGAGAAGATATGTCAGGTTCTGGAAATGGTGTCTGTACAGCTTTAGCTATCTCAAACGCAATCACTAATCTTTGTGCTACCTTGTTTGGACAACTATGGAGGTTAGAACCACTGCCTACAGAGAAGAAAGAGATGTGGAGAAGAGAAATGGAATGGCTTCTCTGTGTCAGTGATCACATTGTAGAGATGACTCCTACTTGGCAAACATTTCCTGATGGAACCAAACTTGAGATAATGACTTGCAGACCAAGATCAGATCTTTATGTTAACCTCCCAGCTCTCAGGAAACTAGATAACATGCTTCTTGAGATATTAGATAGTTTTGAGGAGACAGAGTTTTGGTATGTTGACCAAGGAATCATGGCACACGAATCAGCAGCGGACGGATCATCTTCTTTCCGAAAATCTTTTCAGAGACAAGAAGACAAATGGTGGCTTCCTGTTCCACGGGTTTCACCAGGAGGTTTACAAGAAAACTCAAGAAAACAGTTGCAGCATAAACGCGACTGTACTAATCAGATATTAAAAGCTGCTATGGCCATCAACAGTATCACACTCGCTGACATGGAAATCCCTGAATCATACCTTGAATCTCTTCCGCGGAAAGGGAGATCTTGCCTTGGTGACTTAATCTACAGATACATTTCATCGGATCAATTTTCACCTGAATGTCTTCTTGATTGCCTTGACTTATCCTCTGAACATCAAGCCATAGAGATAGCTAACCGAGTCGAGTCATCGATCTATCTATGGCACAAAAGAACTAATTCCAAACCAGCTACTAATACCAAAACGTCGTGGGAAATGGTGAAAGAACTAATGGTTGATGCAGATAAGCTAGAGCTAATGGCGGATCGAGCTGAAAGTTTATTGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGGACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTAGAGAGCTTAGCATTCAACATTGTTGCACGCATCGATGATTTGCTCTTTGTTGATGATCTTACAAGACATTCATCGGATCAGATTCCTACAACATTAGGCAACAACGGGAATGACGCTCCTAAGAGCATTGCAGTGCCGGTTTCAAACTACACAACTCCGAGCTACTCGCCTTCAAAACAGGAGCTTCGATCATCAATTACAGTTCCACCATCTCCCTCCCGGTTCAAGATTCCTCACAGTAGCAGTGTTAAAAGGGTTTTGACAGCTTATGTAACAAAGAACGAACCAAGACTGAAGAATCTTCCTTTAGAAAGATCGAGCCGTTCTTCGTCGAGTGAGAGATTGTCTCTGGAGAAATGCATGAAGGAGTCGTTGAATGTATCGAACCTTGATCCTGGGATTTGA

Protein Analysis

546

Amino Acids

61.75

Weight (kDa)

5.39

Isoelectric Point (pI)

66.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 69 - 434 3.1e-184 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012828)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1163
AccII CGCG 2 cut(s) 753, 850
AciI CCGC 5 cut(s) 629, 848, 850, 1100, 1161
AclWI GGATC 5 cut(s) 643, 909, 1110, 1320, 1622
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 1550
AfaI GTAC 3 cut(s) 112, 286, 760
AfiI CCNNNNNNNGG 1 cut(s) 854
AgsI TTSAA 8 cut(s) 198, 839, 1227, 1252, 1380, 1410, 1462, 1612
AjnI CCWGG 3 cut(s) 706, 1144, 1630
Alw26I GTCTC 3 cut(s) 572, 658, 1587
AlwI GGATC 5 cut(s) 643, 909, 1110, 1320, 1622
AlwNI CAGNNNCTG 2 cut(s) 60, 269
AoxI GGCC 1 cut(s) 786
ApeKI GCWGC 6 cut(s) 60, 63, 244, 626, 742, 779
ApoI RAATTY 1 cut(s) 19
Asp700I GAANNNNTTC 4 cut(s) 405, 843, 921, 1015
AsuC2I CCSGG 1 cut(s) 1456
AsuHPI GGTGA 4 cut(s) 696, 884, 903, 1069
AsuII TTCGAA 1 cut(s) 236
BalI TGGCCA 1 cut(s) 788
BbsI GAAGAC 3 cut(s) 678, 914, 1142
BbvI GCAGC 6 cut(s) 47, 75, 231, 638, 754, 766
BccI CCATC 4 cut(s) 161, 458, 797, 1453
BceAI ACGGC 2 cut(s) 141, 1542
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 3 cut(s) 708, 1146, 1632
BclI TGATCA 1 cut(s) 421
BcnI CCSGG 1 cut(s) 1456
BcoDI GTCTC 3 cut(s) 572, 658, 1587
BfaI CTAG 5 cut(s) 105, 539, 1088, 1166, 1235
BfmI CTRYAG 3 cut(s) 61, 366, 883
BglII AGATCT 2 cut(s) 505, 860
BisI GCNGC 6 cut(s) 61, 64, 245, 627, 743, 780
BlpI GCTNAGC 1 cut(s) 1243
BlsI GCNGC 6 cut(s) 62, 65, 246, 628, 744, 781
Bme1390I CCNGG 4 cut(s) 708, 1146, 1456, 1632
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 4 cut(s) 708, 1146, 1456, 1632
BmsI GCATC 2 cut(s) 1066, 1275
BpiI GAAGAC 3 cut(s) 678, 914, 1142
BplI GAGNNNNNCTC 2 cut(s) 1567, 1599
BpmI CTGGAG 1 cut(s) 1607
Bpu1102I GCTNAGC 1 cut(s) 1243
Bpu14I TTCGAA 1 cut(s) 236
BpuEI CTTGAG 3 cut(s) 497, 575, 712
BpuMI CCSGG 1 cut(s) 1456
Bsa29I ATCGAT 4 cut(s) 165, 989, 1208, 1269
BsaJI CCNNGG 6 cut(s) 601, 695, 848, 868, 1144, 1631
BsaWI WCCGGW 1 cut(s) 133
BsaXI ACNNNNNCTCC 4 cut(s) 115, 145, 569, 599
Bsc4I CCNNNNNNNGG 1 cut(s) 854
Bse118I RCCGGY 1 cut(s) 1372
Bse3DI GCAATG 1 cut(s) 1362
BseBI CCWGG 3 cut(s) 708, 1146, 1632
BseCI ATCGAT 4 cut(s) 165, 989, 1208, 1269
BseDI CCNNGG 6 cut(s) 601, 695, 848, 868, 1144, 1631
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 854
BseMI GCAATG 1 cut(s) 1362
BseMII CTCAG 1 cut(s) 544
BseRI GAGGAG 2 cut(s) 101, 590
BseXI GCAGC 6 cut(s) 47, 75, 231, 638, 754, 766
BseYI CCCAGC 1 cut(s) 523
Bsh1236I CGCG 2 cut(s) 753, 850
BshFI GGCC 1 cut(s) 788
BshVI ATCGAT 4 cut(s) 165, 989, 1208, 1269
BsiSI CCGG 3 cut(s) 134, 1373, 1456
BslI CCNNNNNNNGG 1 cut(s) 854
BsmAI GTCTC 3 cut(s) 572, 658, 1587
BsmI GAATGC 1 cut(s) 1247
BsnI GGCC 1 cut(s) 788
Bsp119I TTCGAA 1 cut(s) 236
Bsp1407I TGTACA 1 cut(s) 284
Bsp1720I GCTNAGC 1 cut(s) 1243
BspACI CCGC 5 cut(s) 629, 848, 850, 1100, 1161
BspANI GGCC 1 cut(s) 788
BspCNI CTCAG 1 cut(s) 543
BspDI ATCGAT 4 cut(s) 165, 989, 1208, 1269
BspFNI CGCG 2 cut(s) 753, 850
BspLI GGNNCC 1 cut(s) 469
BspMAI CTGCAG 1 cut(s) 65
BspPI GGATC 5 cut(s) 643, 909, 1110, 1320, 1622
BspT104I TTCGAA 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 1163
BsrDI GCAATG 1 cut(s) 1362
BsrFI RCCGGY 1 cut(s) 1372
BsrGI TGTACA 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 1372
BssECI CCNNGG 6 cut(s) 601, 695, 848, 868, 1144, 1631
BssT1I CCWWGG 2 cut(s) 601, 868
Bst2UI CCWGG 3 cut(s) 708, 1146, 1632
Bst4CI ACNGT 5 cut(s) 738, 758, 797, 1438, 1475
Bst6I CTCTTC 3 cut(s) 30, 385, 849
BstAPI GCANNNNNTGC 1 cut(s) 60
BstAUI TGTACA 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 1264
BstDEI CTNAG 3 cut(s) 530, 1243, 1356
BstDSI CCRYGG 2 cut(s) 695, 848
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 753, 850
BstMAI GTCTC 3 cut(s) 572, 658, 1587
BstMWI GCNNNNNNNGC 3 cut(s) 60, 785, 1106
BstNI CCWGG 3 cut(s) 708, 1146, 1632
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 4 cut(s) 706, 1144, 1454, 1630
BstSFI CTRYAG 3 cut(s) 61, 366, 883
BstUI CGCG 2 cut(s) 753, 850
BstV1I GCAGC 6 cut(s) 47, 75, 231, 638, 754, 766
BstV2I GAAGAC 3 cut(s) 678, 914, 1142
BstX2I RGATCY 2 cut(s) 505, 860
BstYI RGATCY 2 cut(s) 505, 860
Bsu15I ATCGAT 4 cut(s) 165, 989, 1208, 1269
BsuRI GGCC 1 cut(s) 788
BsuTUI ATCGAT 4 cut(s) 165, 989, 1208, 1269
BtgI CCRYGG 2 cut(s) 695, 848
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 3 cut(s) 359, 1374, 1486
BtsIMutI CAGTG 4 cut(s) 359, 424, 1374, 1486
Cac8I GCNNGC 1 cut(s) 1264
CaiI CAGNNNCTG 2 cut(s) 60, 269
Cfr10I RCCGGY 1 cut(s) 1372
Cfr42I CCGCGG 1 cut(s) 851
ClaI ATCGAT 4 cut(s) 165, 989, 1208, 1269
CseI GACGC 1 cut(s) 1358
Csp6I GTAC 3 cut(s) 111, 285, 759
CviAII CATG 5 cut(s) 547, 610, 814, 1171, 1597
CviQI GTAC 3 cut(s) 111, 285, 759
DdeI CTNAG 3 cut(s) 530, 1243, 1356
DraI TTTAAA 1 cut(s) 1131
EaeI YGGCCR 1 cut(s) 786
Eam1104I CTCTTC 3 cut(s) 30, 385, 849
EarI CTCTTC 3 cut(s) 30, 385, 849
EciI GGCGGA 1 cut(s) 1115
Eco130I CCWWGG 2 cut(s) 601, 868
Eco57I CTGAAG 1 cut(s) 1550
EcoRII CCWGG 3 cut(s) 706, 1144, 1630
EcoT14I CCWWGG 2 cut(s) 601, 868
EcoT22I ATGCAT 1 cut(s) 1598
ErhI CCWWGG 2 cut(s) 601, 868
FaeI CATG 5 cut(s) 550, 613, 817, 1174, 1600
FatI CATG 5 cut(s) 546, 609, 813, 1170, 1596
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 6 cut(s) 61, 64, 245, 627, 743, 780
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 6 cut(s) 61, 64, 245, 627, 743, 780
FspBI CTAG 5 cut(s) 105, 539, 1088, 1166, 1235
GluI GCNGC 6 cut(s) 61, 64, 245, 627, 743, 780
GsaI CCCAGC 1 cut(s) 527
GsuI CTGGAG 1 cut(s) 1607
HaeIII GGCC 1 cut(s) 788
HapII CCGG 3 cut(s) 134, 1373, 1456
HgaI GACGC 1 cut(s) 1358
Hin1II CATG 5 cut(s) 550, 613, 817, 1174, 1600
HincII GTYRAC 2 cut(s) 517, 598
HindII GTYRAC 2 cut(s) 517, 598
HpaI GTTAAC 1 cut(s) 517
HpaII CCGG 3 cut(s) 134, 1373, 1456
HphI GGTGA 4 cut(s) 696, 884, 903, 1069
Hpy166II GTNNAC 3 cut(s) 517, 598, 716
Hpy8I GTNNAC 3 cut(s) 517, 598, 716
Hpy99I CGWCG 3 cut(s) 16, 1048, 1570
HpyAV CCTTC 3 cut(s) 217, 1416, 1594
HpyCH4III ACNGT 5 cut(s) 738, 758, 797, 1438, 1475
HpyCH4IV ACGT 1 cut(s) 1043
HpyCH4V TGCA 7 cut(s) 63, 492, 742, 1079, 1262, 1367, 1596
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 785, 1106
HpyF3I CTNAG 3 cut(s) 530, 1243, 1356
HpySE526I ACGT 1 cut(s) 1043
Hsp92II CATG 5 cut(s) 550, 613, 817, 1174, 1600
Ksp22I TGATCA 1 cut(s) 421
KspAI GTTAAC 1 cut(s) 517
KspI CCGCGG 1 cut(s) 851
LmnI GCTCC 2 cut(s) 1357, 1417
Lsp1109I GCAGC 6 cut(s) 47, 75, 231, 638, 754, 766
LweI GCATC 2 cut(s) 1066, 1275
MaeI CTAG 5 cut(s) 105, 539, 1088, 1166, 1235
MaeII ACGT 1 cut(s) 1043
MaeIII GTNAC 2 cut(s) 872, 1507
MbiI CCGCTC 1 cut(s) 1163
MflI RGATCY 2 cut(s) 505, 860
MlsI TGGCCA 1 cut(s) 788
MluCI AATT 4 cut(s) 19, 905, 1015, 1431
MluNI TGGCCA 1 cut(s) 788
MlyI GAGTC 4 cut(s) 433, 987, 992, 1613
Mox20I TGGCCA 1 cut(s) 788
Mph1103I ATGCAT 1 cut(s) 1598
MroXI GAANNNNTTC 4 cut(s) 405, 843, 921, 1015
MscI TGGCCA 1 cut(s) 788
MseI TTAA 5 cut(s) 516, 773, 878, 1130, 1485
MslI CAYNNNNRTG 2 cut(s) 916, 1367
Msp20I TGGCCA 1 cut(s) 788
MspA1I CMGCKG 2 cut(s) 629, 850
MspI CCGG 3 cut(s) 134, 1373, 1456
MspR9I CCNGG 4 cut(s) 708, 1146, 1456, 1632
Mva1269I GAATGC 1 cut(s) 1247
MvaI CCWGG 3 cut(s) 708, 1146, 1632
MvnI CGCG 2 cut(s) 753, 850
MwoI GCNNNNNNNGC 3 cut(s) 60, 785, 1106
NciI CCSGG 1 cut(s) 1456
NlaIII CATG 5 cut(s) 550, 613, 817, 1174, 1600
NlaIV GGNNCC 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 872
NsiI ATGCAT 1 cut(s) 1598
NspI RCATGY 1 cut(s) 550
NspV TTCGAA 1 cut(s) 236
PctI GAATGC 1 cut(s) 1247
PdmI GAANNNNTTC 4 cut(s) 405, 843, 921, 1015
PkrI GCNGC 6 cut(s) 62, 65, 246, 628, 744, 781
PleI GAGTC 4 cut(s) 433, 986, 991, 1612
PpsI GAGTC 4 cut(s) 433, 986, 991, 1612
Psp6I CCWGG 3 cut(s) 706, 1144, 1630
PspFI CCCAGC 1 cut(s) 523
PspGI CCWGG 3 cut(s) 706, 1144, 1630
PspN4I GGNNCC 1 cut(s) 469
PstI CTGCAG 1 cut(s) 65
PstNI CAGNNNCTG 2 cut(s) 60, 269
PsuI RGATCY 2 cut(s) 505, 860
RsaI GTAC 3 cut(s) 112, 286, 760
RsaNI GTAC 3 cut(s) 111, 285, 759
RseI CAYNNNNRTG 2 cut(s) 916, 1367
SacII CCGCGG 1 cut(s) 851
SaqAI TTAA 5 cut(s) 516, 773, 878, 1130, 1485
SatI GCNGC 6 cut(s) 61, 64, 245, 627, 743, 780
SchI GAGTC 4 cut(s) 433, 987, 992, 1613
ScrFI CCNGG 4 cut(s) 708, 1146, 1456, 1632
SfaNI GCATC 2 cut(s) 1066, 1275
SfcI CTRYAG 3 cut(s) 61, 366, 883
Sfr303I CCGCGG 1 cut(s) 851
SfuI TTCGAA 1 cut(s) 236
SgrBI CCGCGG 1 cut(s) 851
SmiMI CAYNNNNRTG 2 cut(s) 916, 1367
SmlI CTYRAG 3 cut(s) 476, 554, 727
SmoI CTYRAG 3 cut(s) 476, 554, 727
Sse9I AATT 4 cut(s) 19, 905, 1015, 1431
SsiI CCGC 5 cut(s) 629, 848, 850, 1100, 1161
SspMI CTAG 5 cut(s) 105, 539, 1088, 1166, 1235
StyD4I CCNGG 4 cut(s) 706, 1144, 1454, 1630
StyI CCWWGG 2 cut(s) 601, 868
TaaI ACNGT 5 cut(s) 738, 758, 797, 1438, 1475
TaiI ACGT 1 cut(s) 1046
TasI AATT 4 cut(s) 19, 905, 1015, 1431
TatI WGTACW 2 cut(s) 284, 758
Tru1I TTAA 5 cut(s) 516, 773, 878, 1130, 1485
Tru9I TTAA 5 cut(s) 516, 773, 878, 1130, 1485
TscAI CASTG 4 cut(s) 366, 424, 1374, 1486
TseFI GTSAC 1 cut(s) 872
TseI GCWGC 6 cut(s) 60, 63, 244, 626, 742, 779
Tsp45I GTSAC 1 cut(s) 872
TspDTI ATGAA 5 cut(s) 129, 236, 885, 1296, 1613
TspGWI ACGGA 2 cut(s) 128, 648
TspRI CASTG 4 cut(s) 366, 424, 1374, 1486
XapI RAATTY 1 cut(s) 19
XbaI TCTAGA 2 cut(s) 1165, 1234
XceI RCATGY 1 cut(s) 550
XmnI GAANNNNTTC 4 cut(s) 405, 843, 921, 1015
XspI CTAG 5 cut(s) 105, 539, 1088, 1166, 1235
Zsp2I ATGCAT 1 cut(s) 1598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.