Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012828

Physical Location & Seq

Genomic Coordinates Reverse (-)

38169607 .. 38172471

Gene Structure 2865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024683

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGGAAGGACCTTTCACTCACCAAGAGGAAAGAGAAGGAGCCCATCTACAAAACCAGTACCAACAGCTCAAGCTTTGTCTGCCATTGGTGAGGTTCAGAGGACCCAATATCCAGAACCCAGTTTCCATATTTGGGTTTTGCCTGTCCAAGTACATAAGAAGCCTCTATTCCAGAGCTCGAATCTCGAACTCTTGTTGCTTGGGGAGGCTGACTTACAATGGTATGGTAGTGAACAACTCTGCATTTTGTGATTCAACTGAAGAAGGAATAGCTGCAATGGAAAGTGAGGGGCTTGATGAAATTGTGGGTAAAGGTGAGACCTTTGGGGAGTTTATTGAGATTGAGGAGAAGGGTCGTGAGAGCTGTTCAAGTTCAGATTTTTTGACATCTGAGACTACAGTGCATGAGGAGCAGAGTCACAGTAGCTCTGAGGAGTCATCTTCTCCACCCTCATTGGGTTGGCCTGTTAAGAAATCCGAGGCACCAGATTGTACCAGTGAGAATGGGGCTGAAGCTCATTTGGATGATAGGAAATTACAGAAACAAGGGTCTACAATCTCAGAGACCGAGTTGATGAAGGAGAGGTTTTCGAAATTGCTGCTTGGAGAAGATATGTCAGGTTGTGGAAATGGGGTTTGTACAGCATTGGCGATATCGAATGCGATTACTAATCTTTGTGCAACCCTATTTGGGCAACTTTGGAGACTAGAACCTCTACCGCGGGAGAAGAAATTGATGTGGCGAAGAGAGATGGAATGGCTTCTTTGTGTGAGTGATCACATTGTTGAGTTGAAACCTTCTTGGCAGACATTTCCAGACGGAAGCAAATTGGAGGTCATGAGTTGCAGACCCCGCTCAGATCTTTATGTTAATCTCCCAGCCCTTCGCAAATTGGATAACATGCTTCTTGAAATATTAGATGGTTTTGACGAGACAGAGTTCTGGTATGTTGACCAAGGAATTCTGGCTCCAGATGCTGATGGGTCAACCTCCTTCCGAAGAGCATTTCAGCGCCAAGAAGAGAAGTGGTGGCTTCCTGTGCCCCGAGTTCCTCCTGGTGGACTCCATGAAAGTACAAGAAAGCAAGTGCAGCACAAGCGTGATTGCACAAATCAAATACTTAAAGCTGCAATGGCAATCAATAGTATCACTTTAGCTGATATCGAAGTCCCTGAATCGTATCTGGAAGCTCTTCCAAAGAATGGAAGAGCAAGCTTAGGGGATGTTATTTATCGATATATTTCATCAGATCAATTCTCCCCTGAATGTCTGCTTGATTGCCTTGATCTGTCTTCTGAACATCAAGCTATAGAGATTGCCAACAGAGTTGAGTCCTCAATCTACCTGTGGCGCCAAAAGACAAACTCAAAACCTAAAAATAACAATACCAGAAATAGTTCAAAGTCATCATGGGAAATGGTCAAGGACATGATGGTGGTTGATGCAGATAAAAGGGAATTACTTGCAGAAAGAGCAGAAAGTCTCCTAATTTGTTTGAAGCAACGCTTCCCCGGTCTTCCACAGACATCCCTCGATATGAGCAAGATTCAGTACAATAAGGATGTTGGGAAATCCATCTTGGAGAGCTATTCAAGGGTTCTTGAGAGCCTGGCATTCAACATTGTGGCACGCATTGATGATCTGCTTTATGTAGATGACTTGACCAGGCATTCAGATCAATTCCCATCAAGGCACTCCGATCAGTTCCCATCAATCTCCAAAGTTAGTGTGATTTCACACAAGGCAACTCCTATTCCGTACTCATCAGTGCCCATCTCAAGCACTCCATATAAAACAGCTTATGCCACACCAAGCTTTTCACCTGCACAGCGAGCTAGCCCTCTCCGGGTAGAACGATCACCATTCATGACCAATGCCAGGATTTCTCCTCAGCGCGGATTGGGCGTAAAGAAAGTTCTGACCGATTATCTTAGCATTGATGCAAAAGGAAAGAATTACAGCAACTCAACTGAGACACCGGATTCTGTCCTAGACACAATGCAAACAACTCTTGCATCTCAAATGGGACTAGGTTCTTTTGAGTCTTCAAATGCATCAAGCAGCCCAGCAACTCAGGACTCAGACACACAAGAAAGCACCCACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

703

Amino Acids

78.63

Weight (kDa)

5.38

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	187 - 556	4.3e-184	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02010
fragaria_vesca	FvH4_6g12700
malus_domestica	MD04G1139300.v1.1 MD12G1155100.v1.1
prunus_persica	Prupe.6G264800_v2.0.a1
pyrus_communis	pycom04g12750 pycom12g14720
rosa_chinensis	RchiOBHm_Chr3g0464551
rosa_laevigata	RLG00000024683
rosa_multiflora	Rmu_sc0002031.1_g000015 Rmu_sc0014550.1_g000001 Rmu_sc0042806.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415540
rosa_rugosa	Rorug03G0073100
rosa_samantha	Rh3BG135300 Rh3CG138000 Rh3DG136900
rosa_wichuraiana	Rw3G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1831
Acc36I	ACCTGC	1 cut(s)	1831
AccB1I	GGYRCC	2 cut(s)	481, 1350
AccB7I	CCANNNNNTGG	1 cut(s)	1202
AccBSI	CCGCTC	1 cut(s)	855
AccI	GTMKAC	1 cut(s)	551
AccII	CGCG	2 cut(s)	721, 1896
AciI	CCGC	4 cut(s)	719, 721, 853, 1896
AcsI	RAATTY	1 cut(s)	960
AcuI	CTGAAG	2 cut(s)	279, 531
AcyI	GRCGYC	1 cut(s)	1351
AfaI	GTAC	7 cut(s)	59, 152, 493, 640, 1075, 1553, 1760
AfiI	CCNNNNNNNGG	8 cut(s)	132, 455, 690, 1058, 1202, 1846, 1878, 1895
AgsI	TTSAA	9 cut(s)	255, 369, 793, 911, 1401, 1498, 1593, 1618, 2049
AjnI	CCWGG	4 cut(s)	1054, 1608, 1664, 1877
AjuI	GAANNNNNNNTTGG	2 cut(s)	1562, 1594
AleI	CACNNNNGTG	1 cut(s)	1098
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	7 cut(s)	311, 386, 557, 697, 926, 1487, 1967
AlwNI	CAGNNNCTG	1 cut(s)	977
Ama87I	CYCGRG	1 cut(s)	1044
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	5 cut(s)	272, 598, 1090, 1127, 2061
ApoI	RAATTY	1 cut(s)	960
ArsI	GACNNNNNNTTYG	2 cut(s)	819, 851
Asp700I	GAANNNNTTC	3 cut(s)	759, 1191, 1396
AspLEI	GCGC	3 cut(s)	1014, 1353, 1896
AspS9I	GGNCC	2 cut(s)	8, 101
AsuC2I	CCSGG	2 cut(s)	1512, 1847
AsuHPI	GGTGA	5 cut(s)	11, 100, 326, 1812, 1851
AsuII	TTCGAA	1 cut(s)	590
AsuNHI	GCTAGC	1 cut(s)	1835
AvaI	CYCGRG	1 cut(s)	1044
AvaII	GGWCC	2 cut(s)	8, 101
BaeGI	GKGCMC	2 cut(s)	1044, 1773
BanI	GGYRCC	2 cut(s)	481, 1350
BanII	GRGCYC	2 cut(s)	43, 178
BbsI	GAAGAC	3 cut(s)	1284, 1508, 2037
Bbv12I	GWGCWC	1 cut(s)	178
BbvCI	CCTCAGC	1 cut(s)	1890
BbvI	GCAGC	5 cut(s)	259, 585, 1102, 1114, 2073
BccI	CCATC	9 cut(s)	51, 745, 914, 974, 1426, 1583, 1693, 1717, 1781
BcgI	CGANNNNNNTGC	2 cut(s)	580, 614
BciT130I	CCWGG	4 cut(s)	1056, 1610, 1666, 1879
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	2 cut(s)	1512, 1847
BcoDI	GTCTC	7 cut(s)	311, 386, 557, 697, 926, 1487, 1967
BfaI	CTAG	4 cut(s)	707, 1836, 1991, 2030
BfmI	CTRYAG	2 cut(s)	396, 1308
BfoI	RGCGCY	2 cut(s)	1015, 1354
BfuAI	ACCTGC	1 cut(s)	1831
BglII	AGATCT	1 cut(s)	859
BisI	GCNGC	5 cut(s)	273, 599, 1091, 1128, 2062
BlsI	GCNGC	5 cut(s)	274, 600, 1092, 1129, 2063
Bme1390I	CCNGG	6 cut(s)	1056, 1512, 1610, 1666, 1847, 1879
Bme18I	GGWCC	2 cut(s)	8, 101
BmeT110I	CYCGRG	1 cut(s)	1044
BmgT120I	GGNCC	2 cut(s)	8, 101
BmiI	GGNNCC	5 cut(s)	40, 103, 483, 969, 1352
BmrFI	CCNGG	6 cut(s)	1056, 1512, 1610, 1666, 1847, 1879
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	5 cut(s)	964, 1432, 1930, 2024, 2063
BmtI	GCTAGC	1 cut(s)	1839
BmuI	ACTGGG	1 cut(s)	113
BpiI	GAAGAC	3 cut(s)	1284, 1508, 2037
BpmI	CTGGAG	1 cut(s)	954
Bpu10I	CCTNAGC	2 cut(s)	1216, 1890
Bpu14I	TTCGAA	1 cut(s)	590
BpuEI	CTTGAG	3 cut(s)	53, 1622, 1762
BpuMI	CCSGG	2 cut(s)	1512, 1847
Bsa29I	ATCGAT	1 cut(s)	1234
BsaHI	GRCGYC	1 cut(s)	1351
BsaI	GGTCTC	2 cut(s)	311, 557
BsaJI	CCNNGG	4 cut(s)	477, 719, 955, 1510
BsaWI	WCCGGW	1 cut(s)	1978
Bsc4I	CCNNNNNNNGG	8 cut(s)	132, 455, 690, 1058, 1202, 1846, 1878, 1895
Bse1I	ACTGG	3 cut(s)	55, 119, 495
Bse3DI	GCAATG	2 cut(s)	282, 1137
BseBI	CCWGG	4 cut(s)	1056, 1610, 1666, 1879
BseCI	ATCGAT	1 cut(s)	1234
BseDI	CCNNGG	4 cut(s)	477, 719, 955, 1510
BseGI	GGATG	4 cut(s)	529, 1228, 1526, 1567
BseLI	CCNNNNNNNGG	8 cut(s)	132, 455, 690, 1058, 1202, 1846, 1878, 1895
BseMI	GCAATG	2 cut(s)	282, 1137
BseMII	CTCAG	8 cut(s)	381, 420, 573, 870, 1904, 1962, 2087, 2094
BseNI	ACTGG	3 cut(s)	55, 119, 495
BseRI	GAGGAG	4 cut(s)	359, 422, 446, 1878
BseSI	GKGCMC	2 cut(s)	1044, 1773
BseXI	GCAGC	5 cut(s)	259, 585, 1102, 1114, 2073
BseYI	CCCAGC	2 cut(s)	877, 2065
BsgI	GTGCAG	2 cut(s)	1109, 1809
Bsh1236I	CGCG	2 cut(s)	721, 1896
BshFI	GGCC	1 cut(s)	463
BshNI	GGYRCC	2 cut(s)	481, 1350
BshVI	ATCGAT	1 cut(s)	1234
BsiHKAI	GWGCWC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	1044
BsiSI	CCGG	3 cut(s)	1512, 1846, 1979
BslFI	GGGAC	2 cut(s)	1154, 2040
BslI	CCNNNNNNNGG	8 cut(s)	132, 455, 690, 1058, 1202, 1846, 1878, 1895
BsmAI	GTCTC	7 cut(s)	311, 386, 557, 697, 926, 1487, 1967
BsmFI	GGGAC	2 cut(s)	1154, 2040
BsmI	GAATGC	3 cut(s)	664, 1613, 1669
BsnI	GGCC	1 cut(s)	463
Bso31I	GGTCTC	2 cut(s)	311, 557
BsoBI	CYCGRG	1 cut(s)	1044
Bsp119I	TTCGAA	1 cut(s)	590
Bsp1286I	GDGCHC	4 cut(s)	43, 178, 1044, 1773
Bsp1407I	TGTACA	1 cut(s)	638
Bsp143I	GATC	8 cut(s)	775, 859, 1249, 1285, 1639, 1675, 1699, 1856
BspACI	CCGC	4 cut(s)	719, 721, 853, 1896
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	8 cut(s)	382, 421, 572, 869, 1903, 1963, 2086, 2093
BspDI	ATCGAT	1 cut(s)	1234
BspFNI	CGCG	2 cut(s)	721, 1896
BspHI	TCATGA	2 cut(s)	837, 1866
BspLI	GGNNCC	5 cut(s)	40, 103, 483, 969, 1352
BspMI	ACCTGC	1 cut(s)	1831
BspOI	GCTAGC	1 cut(s)	1839
BspQI	GCTCTTC	3 cut(s)	994, 1197, 1201
BspT104I	TTCGAA	1 cut(s)	590
BspT107I	GGYRCC	2 cut(s)	481, 1350
BspTNI	GGTCTC	2 cut(s)	311, 557
BsrBI	CCGCTC	1 cut(s)	855
BsrDI	GCAATG	2 cut(s)	282, 1137
BsrGI	TGTACA	1 cut(s)	638
BsrI	ACTGG	3 cut(s)	55, 119, 495
BssECI	CCNNGG	4 cut(s)	477, 719, 955, 1510
BssMI	GATC	8 cut(s)	775, 859, 1249, 1285, 1639, 1675, 1699, 1856
BssNI	GRCGYC	1 cut(s)	1351
BssT1I	CCWWGG	1 cut(s)	955
Bst2UI	CCWGG	4 cut(s)	1056, 1610, 1666, 1879
Bst4CI	ACNGT	2 cut(s)	400, 422
Bst6I	CTCTTC	5 cut(s)	739, 994, 1014, 1197, 1201
BstACI	GRCGYC	1 cut(s)	1351
BstAUI	TGTACA	1 cut(s)	638
BstBI	TTCGAA	1 cut(s)	590
BstC8I	GCNNGC	4 cut(s)	1213, 1630, 1833, 1837
BstDSI	CCRYGG	1 cut(s)	719
BstF5I	GGATG	4 cut(s)	529, 1228, 1526, 1567
BstFNI	CGCG	2 cut(s)	721, 1896
BstH2I	RGCGCY	2 cut(s)	1015, 1354
BstHHI	GCGC	3 cut(s)	1014, 1353, 1896
BstKTI	GATC	8 cut(s)	778, 862, 1252, 1288, 1642, 1678, 1702, 1859
BstMAI	GTCTC	7 cut(s)	311, 386, 557, 697, 926, 1487, 1967
BstMBI	GATC	8 cut(s)	775, 859, 1249, 1285, 1639, 1675, 1699, 1856
BstNI	CCWGG	4 cut(s)	1056, 1610, 1666, 1879
BstNSI	RCATGY	1 cut(s)	904
BstSCI	CCNGG	6 cut(s)	1054, 1510, 1608, 1664, 1845, 1877
BstSFI	CTRYAG	2 cut(s)	396, 1308
BstSLI	GKGCMC	2 cut(s)	1044, 1773
BstUI	CGCG	2 cut(s)	721, 1896
BstV1I	GCAGC	5 cut(s)	259, 585, 1102, 1114, 2073
BstV2I	GAAGAC	3 cut(s)	1284, 1508, 2037
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
Bsu15I	ATCGAT	1 cut(s)	1234
BsuRI	GGCC	1 cut(s)	463
BsuTUI	ATCGAT	1 cut(s)	1234
BtgI	CCRYGG	1 cut(s)	719
BtsCI	GGATG	4 cut(s)	529, 1228, 1526, 1567
BtsIMutI	CAGTG	3 cut(s)	405, 502, 1773
BveI	ACCTGC	1 cut(s)	1831
Cac8I	GCNNGC	4 cut(s)	1213, 1630, 1833, 1837
CaiI	CAGNNNCTG	1 cut(s)	977
CciI	TCATGA	2 cut(s)	837, 1866
CfoI	GCGC	3 cut(s)	1014, 1353, 1896
Cfr13I	GGNCC	2 cut(s)	8, 101
Cfr42I	CCGCGG	1 cut(s)	722
ClaI	ATCGAT	1 cut(s)	1234
Csp6I	GTAC	7 cut(s)	58, 151, 492, 639, 1074, 1552, 1759
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	7 cut(s)	404, 838, 901, 1067, 1410, 1429, 1867
CviQI	GTAC	7 cut(s)	58, 151, 492, 639, 1074, 1552, 1759
DinI	GGCGCC	1 cut(s)	1352
DpnI	GATC	8 cut(s)	777, 861, 1251, 1287, 1641, 1677, 1701, 1858
DpnII	GATC	8 cut(s)	775, 859, 1249, 1285, 1639, 1675, 1699, 1856
Eam1104I	CTCTTC	5 cut(s)	739, 994, 1014, 1197, 1201
EarI	CTCTTC	5 cut(s)	739, 994, 1014, 1197, 1201
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	955
Eco24I	GRGCYC	2 cut(s)	43, 178
Eco31I	GGTCTC	2 cut(s)	311, 557
Eco32I	GATATC	2 cut(s)	654, 1162
Eco47I	GGWCC	2 cut(s)	8, 101
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	279, 531
Eco88I	CYCGRG	1 cut(s)	1044
EcoICRI	GAGCTC	1 cut(s)	176
EcoO109I	RGGNCCY	2 cut(s)	8, 101
EcoRI	GAATTC	1 cut(s)	960
EcoRII	CCWGG	4 cut(s)	1054, 1608, 1664, 1877
EcoRV	GATATC	2 cut(s)	654, 1162
EcoT14I	CCWWGG	1 cut(s)	955
EcoT22I	ATGCAT	1 cut(s)	2056
EcoT38I	GRGCYC	2 cut(s)	43, 178
EgeI	GGCGCC	1 cut(s)	1352
EheI	GGCGCC	1 cut(s)	1352
ErhI	CCWWGG	1 cut(s)	955
FaeI	CATG	7 cut(s)	407, 841, 904, 1070, 1413, 1432, 1870
FalI	AAGNNNNNCTT	2 cut(s)	1490, 1522
FaqI	GGGAC	2 cut(s)	1154, 2040
FatI	CATG	7 cut(s)	403, 837, 900, 1066, 1409, 1428, 1866
FauI	CCCGC	2 cut(s)	714, 860
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	551
Fnu4HI	GCNGC	5 cut(s)	273, 599, 1091, 1128, 2062
FokI	GGATG	4 cut(s)	536, 1235, 1513, 1574
FriOI	GRGCYC	2 cut(s)	43, 178
Fsp4HI	GCNGC	5 cut(s)	273, 599, 1091, 1128, 2062
FspBI	CTAG	4 cut(s)	707, 1836, 1991, 2030
GlaI	GCGC	3 cut(s)	1013, 1352, 1895
GluI	GCNGC	5 cut(s)	273, 599, 1091, 1128, 2062
GsaI	CCCAGC	2 cut(s)	881, 2069
GsuI	CTGGAG	1 cut(s)	954
HaeII	RGCGCY	2 cut(s)	1015, 1354
HaeIII	GGCC	1 cut(s)	463
HapII	CCGG	3 cut(s)	1512, 1846, 1979
HhaI	GCGC	3 cut(s)	1014, 1353, 1896
Hin1I	GRCGYC	1 cut(s)	1351
Hin1II	CATG	7 cut(s)	407, 841, 904, 1070, 1413, 1432, 1870
Hin6I	GCGC	3 cut(s)	1012, 1351, 1894
HinP1I	GCGC	3 cut(s)	1012, 1351, 1894
HincII	GTYRAC	2 cut(s)	952, 987
HindII	GTYRAC	2 cut(s)	952, 987
HindIII	AAGCTT	3 cut(s)	71, 1213, 1813
HpaII	CCGG	3 cut(s)	1512, 1846, 1979
HphI	GGTGA	5 cut(s)	11, 100, 326, 1812, 1851
Hpy166II	GTNNAC	5 cut(s)	232, 552, 952, 987, 1061
Hpy8I	GTNNAC	5 cut(s)	232, 552, 952, 987, 1061
HpyAV	CCTTC	7 cut(s)	29, 257, 343, 571, 807, 893, 1003
HpyCH4III	ACNGT	2 cut(s)	400, 422
HpyCH4IV	ACGT	1 cut(s)	2103
HpySE526I	ACGT	1 cut(s)	2103
Hsp92I	GRCGYC	1 cut(s)	1351
Hsp92II	CATG	7 cut(s)	407, 841, 904, 1070, 1413, 1432, 1870
HspAI	GCGC	3 cut(s)	1012, 1351, 1894
KasI	GGCGCC	1 cut(s)	1350
Ksp22I	TGATCA	1 cut(s)	775
KspI	CCGCGG	1 cut(s)	722
Kzo9I	GATC	8 cut(s)	775, 859, 1249, 1285, 1639, 1675, 1699, 1856
LguI	GCTCTTC	3 cut(s)	994, 1197, 1201
LmnI	GCTCC	3 cut(s)	38, 409, 973
Lsp1109I	GCAGC	5 cut(s)	259, 585, 1102, 1114, 2073
LweI	GCATC	5 cut(s)	964, 1432, 1930, 2024, 2063
MaeI	CTAG	4 cut(s)	707, 1836, 1991, 2030
MaeII	ACGT	1 cut(s)	2103
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	8 cut(s)	777, 861, 1251, 1287, 1641, 1677, 1701, 1858
MbiI	CCGCTC	1 cut(s)	855
MboI	GATC	8 cut(s)	775, 859, 1249, 1285, 1639, 1675, 1699, 1856
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	4 cut(s)	43, 178, 1044, 1773
Mly113I	GGCGCC	1 cut(s)	1351
MlyI	GAGTC	6 cut(s)	424, 443, 1056, 1340, 2051, 2072
Mph1103I	ATGCAT	1 cut(s)	2056
MroXI	GAANNNNTTC	3 cut(s)	759, 1191, 1396
MseI	TTAA	3 cut(s)	468, 870, 1122
MslI	CAYNNNNRTG	3 cut(s)	522, 1098, 1433
MspA1I	CMGCKG	1 cut(s)	721
MspI	CCGG	3 cut(s)	1512, 1846, 1979
MspR9I	CCNGG	6 cut(s)	1056, 1512, 1610, 1666, 1847, 1879
Mva1269I	GAATGC	3 cut(s)	664, 1613, 1669
MvaI	CCWGG	4 cut(s)	1056, 1610, 1666, 1879
MvnI	CGCG	2 cut(s)	721, 1896
NarI	GGCGCC	1 cut(s)	1351
NciI	CCSGG	2 cut(s)	1512, 1847
NdeII	GATC	8 cut(s)	775, 859, 1249, 1285, 1639, 1675, 1699, 1856
NheI	GCTAGC	1 cut(s)	1835
NlaIII	CATG	7 cut(s)	407, 841, 904, 1070, 1413, 1432, 1870
NlaIV	GGNNCC	5 cut(s)	40, 103, 483, 969, 1352
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	2056
NspI	RCATGY	1 cut(s)	904
NspV	TTCGAA	1 cut(s)	590
OliI	CACNNNNGTG	1 cut(s)	1098
PagI	TCATGA	2 cut(s)	837, 1866
PaqCI	CACCTGC	1 cut(s)	1831
PciSI	GCTCTTC	3 cut(s)	994, 1197, 1201
PctI	GAATGC	3 cut(s)	664, 1613, 1669
PdmI	GAANNNNTTC	3 cut(s)	759, 1191, 1396
PfeI	GAWTC	5 cut(s)	180, 251, 1175, 1546, 1982
PflMI	CCANNNNNTGG	1 cut(s)	1202
PkrI	GCNGC	5 cut(s)	274, 600, 1092, 1129, 2063
PleI	GAGTC	6 cut(s)	423, 442, 1056, 1339, 2050, 2072
PluTI	GGCGCC	1 cut(s)	1354
PpsI	GAGTC	6 cut(s)	423, 442, 1056, 1339, 2050, 2072
PpuMI	RGGWCCY	2 cut(s)	8, 101
Psp124BI	GAGCTC	1 cut(s)	178
Psp5II	RGGWCCY	2 cut(s)	8, 101
Psp6I	CCWGG	4 cut(s)	1054, 1608, 1664, 1877
PspFI	CCCAGC	2 cut(s)	877, 2065
PspGI	CCWGG	4 cut(s)	1054, 1608, 1664, 1877
PspN4I	GGNNCC	5 cut(s)	40, 103, 483, 969, 1352
PspPI	GGNCC	2 cut(s)	8, 101
PspPPI	RGGWCCY	2 cut(s)	8, 101
PsrI	GAACNNNNNNTAC	2 cut(s)	1899, 1931
PstNI	CAGNNNCTG	1 cut(s)	977
PsuI	RGATCY	1 cut(s)	859
RsaI	GTAC	7 cut(s)	59, 152, 493, 640, 1075, 1553, 1760
RsaNI	GTAC	7 cut(s)	58, 151, 492, 639, 1074, 1552, 1759
RseI	CAYNNNNRTG	3 cut(s)	522, 1098, 1433
SacI	GAGCTC	1 cut(s)	178
SacII	CCGCGG	1 cut(s)	722
SapI	GCTCTTC	3 cut(s)	994, 1197, 1201
SaqAI	TTAA	3 cut(s)	468, 870, 1122
SatI	GCNGC	5 cut(s)	273, 599, 1091, 1128, 2062
Sau3AI	GATC	8 cut(s)	775, 859, 1249, 1285, 1639, 1675, 1699, 1856
Sau96I	GGNCC	2 cut(s)	8, 101
SchI	GAGTC	6 cut(s)	424, 443, 1056, 1340, 2051, 2072
ScrFI	CCNGG	6 cut(s)	1056, 1512, 1610, 1666, 1847, 1879
SduI	GDGCHC	4 cut(s)	43, 178, 1044, 1773
SfaNI	GCATC	5 cut(s)	964, 1432, 1930, 2024, 2063
SfcI	CTRYAG	2 cut(s)	396, 1308
SfoI	GGCGCC	1 cut(s)	1352
Sfr303I	CCGCGG	1 cut(s)	722
SfuI	TTCGAA	1 cut(s)	590
SgrBI	CCGCGG	1 cut(s)	722
SinI	GGWCC	2 cut(s)	8, 101
SmiMI	CAYNNNNRTG	3 cut(s)	522, 1098, 1433
SmlI	CTYRAG	3 cut(s)	68, 1601, 1777
SmoI	CTYRAG	3 cut(s)	68, 1601, 1777
SsiI	CCGC	4 cut(s)	719, 721, 853, 1896
SspDI	GGCGCC	1 cut(s)	1350
SspI	AATATT	1 cut(s)	915
SspMI	CTAG	4 cut(s)	707, 1836, 1991, 2030
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	6 cut(s)	1054, 1510, 1608, 1664, 1845, 1877
StyI	CCWWGG	1 cut(s)	955
TaaI	ACNGT	2 cut(s)	400, 422
TaiI	ACGT	1 cut(s)	2106
TaqI	TCGA	7 cut(s)	178, 185, 590, 656, 1164, 1234, 1533
TaqII	GACCGA	2 cut(s)	581, 1937
TatI	WGTACW	4 cut(s)	150, 638, 1073, 1551
TfiI	GAWTC	5 cut(s)	180, 251, 1175, 1546, 1982
Tru1I	TTAA	3 cut(s)	468, 870, 1122
Tru9I	TTAA	3 cut(s)	468, 870, 1122
TscAI	CASTG	3 cut(s)	405, 502, 1773
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	5 cut(s)	272, 598, 1090, 1127, 2061
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	5 cut(s)	312, 590, 1083, 1233, 1855
TspGWI	ACGGA	2 cut(s)	834, 1746
TspRI	CASTG	3 cut(s)	405, 502, 1773
Van91I	CCANNNNNTGG	1 cut(s)	1202
VpaK11BI	GGWCC	2 cut(s)	8, 101
XapI	RAATTY	1 cut(s)	960
XceI	RCATGY	1 cut(s)	904
XmiI	GTMKAC	1 cut(s)	551
XmnI	GAANNNNTTC	3 cut(s)	759, 1191, 1396
XspI	CTAG	4 cut(s)	707, 1836, 1991, 2030
Zsp2I	ATGCAT	1 cut(s)	2056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.