Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042806.1

Orthogroup ID

OG0012828

Physical Location & Seq

Genomic Coordinates Forward (+)

3321 .. 4991

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042806.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atggaaggacctttcactcaccaagaggaaagagaaggagcccatctacaaaaccagtaccaacagctcaagctttgtctgccattggtgaggttcagaggacccaatatccagaacccagtttccatatttgggttttgcctgtccaagtacataagaagcctctattccagagctcgaatctctaactcttgttgcttggggaggctgacttacaatggtatggtagtgatgaacaactctgcattttgtgattcaactgaagaaggaatagctgcaatggaaagtgaggggcttgatgaaattgtgggtaaaggtgagacctttggggagttgattgagattgaggagaagggtcgtgagagctgttcaagttcagattttttgacatctgagactacagtgcatgaggagcagagtcacagtagctctgaggagacatcttctccaccctcattgggttggcctgttaagaaatctgaggcaccagattgtaccagtgagaatggggctgaagcccatttggatgataggaaattacagaaacaagggtctacaatctcagagactgagttgatgaaggagaggttttcaaaattgctgcttggagaagatatgtcaggttgtggaaatggggtttgtacagcattggctatatcgaatgcgattactaatctttgtgcaaccctatttgggcaactttggagactagaacctctaccgcgggagaagaaattgatgtggcgaagagagatggaatggcttctttgtgtgagtgatcacatcgttgagttgaaaccttcttggcagacatttccagacggaagcaaattggaggtcatgagttgcagaccccgctcagatctttatgttaatctcccagcccttcgcaaattggataacatgcttcttgaaatattagatggttttgacgagacagagttctggtatgttgaccaaggaattctggctccagatgctgatggatcaacctccttccgaagagcatttcaacgccaagaagagaagtggtggcttcctgtgccccgagttcctcctggtggactccatgaaagtacaagaaagcaagtgcagcacaagcgtgattgcacaaatcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

373

Amino Acids

42.18

Weight (kDa)

5.13

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02010
fragaria_vesca	FvH4_6g12700
malus_domestica	MD04G1139300.v1.1 MD12G1155100.v1.1
prunus_persica	Prupe.6G264800_v2.0.a1
pyrus_communis	pycom04g12750 pycom12g14720
rosa_chinensis	RchiOBHm_Chr3g0464551
rosa_laevigata	RLG00000024683
rosa_multiflora	Rmu_sc0002031.1_g000015 Rmu_sc0014550.1_g000001 Rmu_sc0042806.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415540
rosa_rugosa	Rorug03G0073100
rosa_samantha	Rh3BG135300 Rh3CG138000 Rh3DG136900
rosa_wichuraiana	Rw3G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	484
AccBSI	CCGCTC	1 cut(s)	858
AccI	GTMKAC	1 cut(s)	554
AccII	CGCG	1 cut(s)	724
AciI	CCGC	3 cut(s)	722, 724, 856
AclWI	GGATC	1 cut(s)	994
AcsI	RAATTY	1 cut(s)	963
AcuI	CTGAAG	2 cut(s)	282, 534
AfaI	GTAC	5 cut(s)	59, 152, 496, 643, 1078
AfiI	CCNNNNNNNGG	4 cut(s)	132, 458, 693, 1061
AgsI	TTSAA	6 cut(s)	258, 372, 594, 796, 914, 1013
AjnI	CCWGG	1 cut(s)	1057
AleI	CACNNNNGTG	1 cut(s)	1101
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	6 cut(s)	67, 73, 176, 275, 366, 429
AluI	AGCT	6 cut(s)	67, 73, 176, 275, 366, 429
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	6 cut(s)	314, 389, 431, 560, 700, 929
AlwI	GGATC	1 cut(s)	994
AlwNI	CAGNNNCTG	2 cut(s)	569, 980
Ama87I	CYCGRG	1 cut(s)	1047
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	3 cut(s)	275, 601, 1093
ApoI	RAATTY	1 cut(s)	963
ArsI	GACNNNNNNTTYG	2 cut(s)	822, 854
Asp700I	GAANNNNTTC	1 cut(s)	762
AspS9I	GGNCC	2 cut(s)	8, 101
AsuHPI	GGTGA	3 cut(s)	11, 100, 329
AvaI	CYCGRG	1 cut(s)	1047
AvaII	GGWCC	2 cut(s)	8, 101
BaeGI	GKGCMC	1 cut(s)	1047
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	2 cut(s)	43, 178
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	262, 588, 1105
BccI	CCATC	4 cut(s)	51, 748, 917, 977
BciT130I	CCWGG	1 cut(s)	1059
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	6 cut(s)	314, 389, 431, 560, 700, 929
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	1 cut(s)	399
BglII	AGATCT	1 cut(s)	862
BisI	GCNGC	3 cut(s)	276, 602, 1094
BlsI	GCNGC	3 cut(s)	277, 603, 1095
Bme1390I	CCNGG	1 cut(s)	1059
Bme18I	GGWCC	2 cut(s)	8, 101
BmeT110I	CYCGRG	1 cut(s)	1047
BmgT120I	GGNCC	2 cut(s)	8, 101
BmiI	GGNNCC	4 cut(s)	40, 103, 486, 972
BmrFI	CCNGG	1 cut(s)	1059
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	967
BmuI	ACTGGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	957
BpuEI	CTTGAG	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	722, 958
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 458, 693, 1061
Bse1I	ACTGG	3 cut(s)	55, 119, 498
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	1059
BseDI	CCNNGG	2 cut(s)	722, 958
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	4 cut(s)	132, 458, 693, 1061
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	6 cut(s)	384, 423, 471, 561, 576, 873
BseNI	ACTGG	3 cut(s)	55, 119, 498
BseRI	GAGGAG	3 cut(s)	362, 425, 449
BseSI	GKGCMC	1 cut(s)	1047
BseXI	GCAGC	3 cut(s)	262, 588, 1105
BseYI	CCCAGC	1 cut(s)	880
BsgI	GTGCAG	1 cut(s)	1112
Bsh1236I	CGCG	1 cut(s)	724
BshFI	GGCC	1 cut(s)	466
BshNI	GGYRCC	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	1047
BslI	CCNNNNNNNGG	4 cut(s)	132, 458, 693, 1061
BsmAI	GTCTC	6 cut(s)	314, 389, 431, 560, 700, 929
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	1 cut(s)	466
Bso31I	GGTCTC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	1047
Bsp1286I	GDGCHC	3 cut(s)	43, 178, 1047
Bsp1407I	TGTACA	1 cut(s)	641
Bsp143I	GATC	3 cut(s)	778, 862, 986
BspACI	CCGC	3 cut(s)	722, 724, 856
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	6 cut(s)	385, 424, 472, 562, 575, 872
BspFNI	CGCG	1 cut(s)	724
BspHI	TCATGA	1 cut(s)	840
BspLI	GGNNCC	4 cut(s)	40, 103, 486, 972
BspPI	GGATC	1 cut(s)	994
BspQI	GCTCTTC	1 cut(s)	997
BspT107I	GGYRCC	1 cut(s)	484
BspTNI	GGTCTC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	858
BsrDI	GCAATG	1 cut(s)	285
BsrGI	TGTACA	1 cut(s)	641
BsrI	ACTGG	3 cut(s)	55, 119, 498
BssECI	CCNNGG	2 cut(s)	722, 958
BssMI	GATC	3 cut(s)	778, 862, 986
BssT1I	CCWWGG	1 cut(s)	958
Bst2UI	CCWGG	1 cut(s)	1059
Bst4CI	ACNGT	2 cut(s)	403, 425
Bst6I	CTCTTC	3 cut(s)	742, 997, 1017
BstAUI	TGTACA	1 cut(s)	641
BstDEI	CTNAG	6 cut(s)	393, 432, 480, 562, 570, 859
BstDSI	CCRYGG	1 cut(s)	722
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	1 cut(s)	724
BstKTI	GATC	3 cut(s)	781, 865, 989
BstMAI	GTCTC	6 cut(s)	314, 389, 431, 560, 700, 929
BstMBI	GATC	3 cut(s)	778, 862, 986
BstMWI	GCNNNNNNNGC	7 cut(s)	79, 412, 855, 977, 1042, 1093, 1099
BstNI	CCWGG	1 cut(s)	1059
BstNSI	RCATGY	1 cut(s)	907
BstSCI	CCNGG	1 cut(s)	1057
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	1047
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	3 cut(s)	262, 588, 1105
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	1 cut(s)	466
BtgI	CCRYGG	1 cut(s)	722
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	408, 505
CaiI	CAGNNNCTG	2 cut(s)	569, 980
CciI	TCATGA	1 cut(s)	840
Cfr13I	GGNCC	2 cut(s)	8, 101
Cfr42I	CCGCGG	1 cut(s)	725
Csp6I	GTAC	5 cut(s)	58, 151, 495, 642, 1077
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviAII	CATG	4 cut(s)	407, 841, 904, 1070
CviQI	GTAC	5 cut(s)	58, 151, 495, 642, 1077
DdeI	CTNAG	6 cut(s)	393, 432, 480, 562, 570, 859
DpnI	GATC	3 cut(s)	780, 864, 988
DpnII	GATC	3 cut(s)	778, 862, 986
Eam1104I	CTCTTC	3 cut(s)	742, 997, 1017
EarI	CTCTTC	3 cut(s)	742, 997, 1017
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	958
Eco24I	GRGCYC	2 cut(s)	43, 178
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	2 cut(s)	8, 101
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	282, 534
Eco88I	CYCGRG	1 cut(s)	1047
EcoICRI	GAGCTC	1 cut(s)	176
EcoO109I	RGGNCCY	2 cut(s)	8, 101
EcoRI	GAATTC	1 cut(s)	963
EcoRII	CCWGG	1 cut(s)	1057
EcoT14I	CCWWGG	1 cut(s)	958
EcoT38I	GRGCYC	2 cut(s)	43, 178
ErhI	CCWWGG	1 cut(s)	958
FaeI	CATG	4 cut(s)	410, 844, 907, 1073
FatI	CATG	4 cut(s)	406, 840, 903, 1069
FauI	CCCGC	2 cut(s)	717, 863
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	3 cut(s)	276, 602, 1094
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	2 cut(s)	43, 178
Fsp4HI	GCNGC	3 cut(s)	276, 602, 1094
FspBI	CTAG	1 cut(s)	710
GluI	GCNGC	3 cut(s)	276, 602, 1094
GsaI	CCCAGC	1 cut(s)	884
GsuI	CTGGAG	1 cut(s)	957
HaeIII	GGCC	1 cut(s)	466
Hin1II	CATG	4 cut(s)	410, 844, 907, 1073
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	4 cut(s)	180, 254, 418, 1065
HphI	GGTGA	3 cut(s)	11, 100, 329
Hpy166II	GTNNAC	3 cut(s)	555, 955, 1064
Hpy188I	TCNGA	8 cut(s)	98, 379, 394, 433, 481, 565, 862, 1001
Hpy188III	TCNNGA	7 cut(s)	112, 171, 359, 818, 841, 911, 974
Hpy8I	GTNNAC	3 cut(s)	555, 955, 1064
HpyAV	CCTTC	7 cut(s)	29, 260, 346, 574, 810, 896, 1006
HpyCH4III	ACNGT	2 cut(s)	403, 425
HpyCH4V	TGCA	7 cut(s)	245, 278, 406, 683, 849, 1093, 1110
HpyF10VI	GCNNNNNNNGC	7 cut(s)	79, 412, 855, 977, 1042, 1093, 1099
HpyF3I	CTNAG	6 cut(s)	393, 432, 480, 562, 570, 859
Hsp92II	CATG	4 cut(s)	410, 844, 907, 1073
Ksp22I	TGATCA	1 cut(s)	778
KspI	CCGCGG	1 cut(s)	725
Kzo9I	GATC	3 cut(s)	778, 862, 986
LguI	GCTCTTC	1 cut(s)	997
LmnI	GCTCC	3 cut(s)	38, 412, 976
Lsp1109I	GCAGC	3 cut(s)	262, 588, 1105
LweI	GCATC	1 cut(s)	967
MaeI	CTAG	1 cut(s)	710
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	3 cut(s)	780, 864, 988
MbiI	CCGCTC	1 cut(s)	858
MboI	GATC	3 cut(s)	778, 862, 986
MboII	GAAGA	7 cut(s)	275, 435, 623, 742, 759, 1014, 1034
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	3 cut(s)	43, 178, 1047
MluCI	AATT	7 cut(s)	303, 536, 596, 734, 830, 893, 963
MlyI	GAGTC	2 cut(s)	427, 1059
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	2 cut(s)	471, 873
MslI	CAYNNNNRTG	2 cut(s)	525, 1101
MspA1I	CMGCKG	1 cut(s)	724
MspR9I	CCNGG	1 cut(s)	1059
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	1 cut(s)	1059
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	7 cut(s)	79, 412, 855, 977, 1042, 1093, 1099
NdeII	GATC	3 cut(s)	778, 862, 986
NlaIII	CATG	4 cut(s)	410, 844, 907, 1073
NlaIV	GGNNCC	4 cut(s)	40, 103, 486, 972
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	907
OliI	CACNNNNGTG	1 cut(s)	1101
PagI	TCATGA	1 cut(s)	840
PciSI	GCTCTTC	1 cut(s)	997
PctI	GAATGC	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	2 cut(s)	180, 254
PkrI	GCNGC	3 cut(s)	277, 603, 1095
PleI	GAGTC	2 cut(s)	426, 1059
PpsI	GAGTC	2 cut(s)	426, 1059
PpuMI	RGGWCCY	2 cut(s)	8, 101
Psp124BI	GAGCTC	1 cut(s)	178
Psp5II	RGGWCCY	2 cut(s)	8, 101
Psp6I	CCWGG	1 cut(s)	1057
PspFI	CCCAGC	1 cut(s)	880
PspGI	CCWGG	1 cut(s)	1057
PspN4I	GGNNCC	4 cut(s)	40, 103, 486, 972
PspPI	GGNCC	2 cut(s)	8, 101
PspPPI	RGGWCCY	2 cut(s)	8, 101
PstNI	CAGNNNCTG	2 cut(s)	569, 980
PsuI	RGATCY	1 cut(s)	862
RsaI	GTAC	5 cut(s)	59, 152, 496, 643, 1078
RsaNI	GTAC	5 cut(s)	58, 151, 495, 642, 1077
RseI	CAYNNNNRTG	2 cut(s)	525, 1101
SacI	GAGCTC	1 cut(s)	178
SacII	CCGCGG	1 cut(s)	725
SapI	GCTCTTC	1 cut(s)	997
SaqAI	TTAA	2 cut(s)	471, 873
SatI	GCNGC	3 cut(s)	276, 602, 1094
Sau3AI	GATC	3 cut(s)	778, 862, 986
Sau96I	GGNCC	2 cut(s)	8, 101
SchI	GAGTC	2 cut(s)	427, 1059
ScrFI	CCNGG	1 cut(s)	1059
SduI	GDGCHC	3 cut(s)	43, 178, 1047
SfaNI	GCATC	1 cut(s)	967
SfcI	CTRYAG	1 cut(s)	399
Sfr303I	CCGCGG	1 cut(s)	725
SgrBI	CCGCGG	1 cut(s)	725
SinI	GGWCC	2 cut(s)	8, 101
SmiMI	CAYNNNNRTG	2 cut(s)	525, 1101
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	7 cut(s)	303, 536, 596, 734, 830, 893, 963
SsiI	CCGC	3 cut(s)	722, 724, 856
SspI	AATATT	1 cut(s)	918
SspMI	CTAG	1 cut(s)	710
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	1057
StyI	CCWWGG	1 cut(s)	958
TaaI	ACNGT	2 cut(s)	403, 425
TaqI	TCGA	2 cut(s)	178, 659
TasI	AATT	7 cut(s)	303, 536, 596, 734, 830, 893, 963
TatI	WGTACW	3 cut(s)	150, 641, 1076
TfiI	GAWTC	2 cut(s)	180, 254
Tru1I	TTAA	2 cut(s)	471, 873
Tru9I	TTAA	2 cut(s)	471, 873
TscAI	CASTG	2 cut(s)	408, 505
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	3 cut(s)	275, 601, 1093
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	4 cut(s)	248, 315, 593, 1086
TspGWI	ACGGA	1 cut(s)	837
TspRI	CASTG	2 cut(s)	408, 505
VpaK11BI	GGWCC	2 cut(s)	8, 101
XapI	RAATTY	1 cut(s)	963
XceI	RCATGY	1 cut(s)	907
XmiI	GTMKAC	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.