Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014550.1

Orthogroup ID

OG0012828

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 774

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014550.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 679 bp

gatggtggttgatgcagataaaagggaattacttgcagaaagagcagaaagtctcttaatttgtttgaagcaacgcttccccggtcttccacagacatccctcgatatgagcaagattcagtacaataaggatgttgggaaatccatcttggagagctattcaagggttcttgagagcctggcattcaacattgtggcacgcattgatgatctgctttatgtagatgacttgaccaggcattcagatcagttcccatcacggcactccgatcagttcccatcaatctccaaagttagtgtgatttcacacaaggcaactcctattccatactcatcagtgcccatctcaagcactccatataaaacagcttatgccacaccaagcttttcacctgcacagcgagctagccctctccgggtagaacgatcaccattcacgaccaatgccaggatttctcctcagcgcggattgggcgtaaagaaagttctgaccgattatcttagcattgatgcaaaaggaaagaattacagcaactcaactgagacaccggattcagcctcagacacaatgcaaacaactcttgaatctcaaatgggactaggttcttttgagtcttcaaatgcatcaagcagcccagcaactcaggactcggacacgcaagaaagaacccacgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

225

Amino Acids

24.78

Weight (kDa)

6.43

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02010
fragaria_vesca	FvH4_6g12700
malus_domestica	MD04G1139300.v1.1 MD12G1155100.v1.1
prunus_persica	Prupe.6G264800_v2.0.a1
pyrus_communis	pycom04g12750 pycom12g14720
rosa_chinensis	RchiOBHm_Chr3g0464551
rosa_laevigata	RLG00000024683
rosa_multiflora	Rmu_sc0002031.1_g000015 Rmu_sc0014550.1_g000001 Rmu_sc0042806.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415540
rosa_rugosa	Rorug03G0073100
rosa_samantha	Rh3BG135300 Rh3CG138000 Rh3DG136900
rosa_wichuraiana	Rw3G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	401
AccII	CGCG	1 cut(s)	466
AciI	CCGC	1 cut(s)	466
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	3 cut(s)	416, 448, 465
AgsI	TTSAA	5 cut(s)	68, 163, 188, 585, 619
AjnI	CCWGG	3 cut(s)	178, 234, 447
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	4 cut(s)	157, 369, 385, 405
AluI	AGCT	4 cut(s)	157, 369, 385, 405
Alw26I	GTCTC	2 cut(s)	57, 537
ApeKI	GCWGC	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	466
AsuC2I	CCSGG	2 cut(s)	82, 417
AsuHPI	GGTGA	2 cut(s)	382, 421
AsuNHI	GCTAGC	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	343
BbsI	GAAGAC	2 cut(s)	78, 607
BbvCI	CCTCAGC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	4 cut(s)	153, 263, 287, 351
BceAI	ACGGC	1 cut(s)	276
BciT130I	CCWGG	3 cut(s)	180, 236, 449
BcnI	CCSGG	2 cut(s)	82, 417
BcoDI	GTCTC	2 cut(s)	57, 537
BfaI	CTAG	2 cut(s)	406, 600
BfuAI	ACCTGC	1 cut(s)	401
BisI	GCNGC	1 cut(s)	632
BlsI	GCNGC	1 cut(s)	633
Bme1390I	CCNGG	5 cut(s)	82, 180, 236, 417, 449
BmrFI	CCNGG	5 cut(s)	82, 180, 236, 417, 449
BmsI	GCATC	3 cut(s)	2, 500, 633
BmtI	GCTAGC	1 cut(s)	409
BpiI	GAAGAC	2 cut(s)	78, 607
Bpu10I	CCTNAGC	1 cut(s)	460
BpuEI	CTTGAG	2 cut(s)	192, 332
BpuMI	CCSGG	2 cut(s)	82, 417
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	3 cut(s)	416, 448, 465
BseBI	CCWGG	3 cut(s)	180, 236, 449
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	2 cut(s)	96, 137
BseLI	CCNNNNNNNGG	3 cut(s)	416, 448, 465
BseMII	CTCAG	4 cut(s)	474, 532, 574, 657
BseRI	GAGGAG	1 cut(s)	448
BseSI	GKGCMC	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	643
BseYI	CCCAGC	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	466
BsiSI	CCGG	3 cut(s)	82, 416, 549
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	3 cut(s)	416, 448, 465
BsmAI	GTCTC	2 cut(s)	57, 537
BsmFI	GGGAC	1 cut(s)	610
BsmI	GAATGC	2 cut(s)	183, 239
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	4 cut(s)	209, 245, 269, 426
BspACI	CCGC	1 cut(s)	466
BspCNI	CTCAG	4 cut(s)	473, 533, 573, 656
BspFNI	CGCG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	401
BspOI	GCTAGC	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	4 cut(s)	209, 245, 269, 426
Bst2UI	CCWGG	3 cut(s)	180, 236, 449
BstC8I	GCNNGC	3 cut(s)	200, 403, 407
BstDEI	CTNAG	5 cut(s)	460, 501, 541, 560, 643
BstF5I	GGATG	2 cut(s)	96, 137
BstFNI	CGCG	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	4 cut(s)	212, 248, 272, 429
BstMAI	GTCTC	2 cut(s)	57, 537
BstMBI	GATC	4 cut(s)	209, 245, 269, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 402, 472
BstNI	CCWGG	3 cut(s)	180, 236, 449
BstSCI	CCNGG	5 cut(s)	80, 178, 234, 415, 447
BstSLI	GKGCMC	1 cut(s)	343
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	643
BstV2I	GAAGAC	2 cut(s)	78, 607
BtsCI	GGATG	2 cut(s)	96, 137
BtsIMutI	CAGTG	1 cut(s)	343
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	3 cut(s)	200, 403, 407
CfoI	GCGC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	122
CviJI	RGCY	8 cut(s)	157, 178, 369, 385, 405, 409, 558, 634
CviKI_1	RGCY	8 cut(s)	157, 178, 369, 385, 405, 409, 558, 634
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	5 cut(s)	460, 501, 541, 560, 643
DpnI	GATC	4 cut(s)	211, 247, 271, 428
DpnII	GATC	4 cut(s)	209, 245, 269, 426
EcoRII	CCWGG	3 cut(s)	178, 234, 447
EcoT22I	ATGCAT	1 cut(s)	626
FaiI	YATR	6 cut(s)	108, 220, 329, 359, 361, 373
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	632
FokI	GGATG	2 cut(s)	83, 144
Fsp4HI	GCNGC	1 cut(s)	632
FspBI	CTAG	2 cut(s)	406, 600
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	1 cut(s)	632
GsaI	CCCAGC	1 cut(s)	639
HapII	CCGG	3 cut(s)	82, 416, 549
HhaI	GCGC	1 cut(s)	466
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	5 cut(s)	116, 552, 585, 612, 648
HpaII	CCGG	3 cut(s)	82, 416, 549
HphI	GGTGA	2 cut(s)	382, 421
Hpy188I	TCNGA	5 cut(s)	245, 269, 490, 563, 653
Hpy188III	TCNNGA	4 cut(s)	171, 437, 582, 645
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	6 cut(s)	15, 36, 396, 513, 572, 624
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 402, 472
HpyF3I	CTNAG	5 cut(s)	460, 501, 541, 560, 643
HpySE526I	ACGT	1 cut(s)	673
HspAI	GCGC	1 cut(s)	464
Kzo9I	GATC	4 cut(s)	209, 245, 269, 426
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	3 cut(s)	2, 500, 633
MaeI	CTAG	2 cut(s)	406, 600
MaeII	ACGT	1 cut(s)	673
MalI	GATC	4 cut(s)	211, 247, 271, 428
MboI	GATC	4 cut(s)	209, 245, 269, 426
MboII	GAAGA	2 cut(s)	78, 607
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	3 cut(s)	27, 58, 524
MlyI	GAGTC	2 cut(s)	621, 642
MnlI	CCTC	4 cut(s)	111, 421, 469, 569
Mph1103I	ATGCAT	1 cut(s)	626
MseI	TTAA	1 cut(s)	57
MspI	CCGG	3 cut(s)	82, 416, 549
MspR9I	CCNGG	5 cut(s)	82, 180, 236, 417, 449
Mva1269I	GAATGC	2 cut(s)	183, 239
MvaI	CCWGG	3 cut(s)	180, 236, 449
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	3 cut(s)	42, 402, 472
NciI	CCSGG	2 cut(s)	82, 417
NdeII	GATC	4 cut(s)	209, 245, 269, 426
NheI	GCTAGC	1 cut(s)	405
NsiI	ATGCAT	1 cut(s)	626
PaqCI	CACCTGC	1 cut(s)	401
PctI	GAATGC	2 cut(s)	183, 239
PfeI	GAWTC	3 cut(s)	116, 552, 585
PkrI	GCNGC	1 cut(s)	633
PleI	GAGTC	2 cut(s)	620, 642
PpsI	GAGTC	2 cut(s)	620, 642
Psp6I	CCWGG	3 cut(s)	178, 234, 447
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	3 cut(s)	178, 234, 447
PsrI	GAACNNNNNNTAC	2 cut(s)	469, 501
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	632
Sau3AI	GATC	4 cut(s)	209, 245, 269, 426
SchI	GAGTC	2 cut(s)	621, 642
ScrFI	CCNGG	5 cut(s)	82, 180, 236, 417, 449
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	7 cut(s)	159, 371, 387, 395, 407, 605, 676
SfaNI	GCATC	3 cut(s)	2, 500, 633
SmlI	CTYRAG	2 cut(s)	171, 347
SmoI	CTYRAG	2 cut(s)	171, 347
Sse9I	AATT	3 cut(s)	27, 58, 524
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	2 cut(s)	406, 600
StyD4I	CCNGG	5 cut(s)	80, 178, 234, 415, 447
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	1 cut(s)	103
TaqII	GACCGA	1 cut(s)	507
TasI	AATT	3 cut(s)	27, 58, 524
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	3 cut(s)	116, 552, 585
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	1 cut(s)	631
TspRI	CASTG	1 cut(s)	343
XspI	CTAG	2 cut(s)	406, 600
Zsp2I	ATGCAT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.