AT5G02160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013084
Physical Location & Seq
Forward (+)
426226 .. 427461
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02160.1

Sequence Viewer

Length: 390 bp
ATGACGATCGCACCGGCATTGCAGACGACGTTCGTGTCATCAACCAACTTCCTGAAACATTCTTCTTCGTGGGGATCACCATCACCGAACAATGTGATTCTTCCCAAAAACAAGAGATCTTCTTCCTCCGTAGTTGTCGCCGCCGTCGGTGATGTCTCTTCTGACGGAACAATCTACTTAATCGGCGGAGCCATCGCCGTTGCACTCGTCGGAACTGCATTCCCGATCCTCTTCAAACGCAAAGACACGTGTCCGGAATGTGACGGAGCAGGATTTGTGAGGAAAGGAGGAGTGACTCTGAGAGCCAACGCCGCACGGAAGGATCTTCCTCAGATCGTTTGTGCTAACTGCAATGGACTCGGAAAGCTTAACCAGATTGATAAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.38

Weight (kDa)

9.59

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02160
fragaria_vesca FvH4_6g13360
malus_domestica MD04G1131700.v1.1 MD12G1144800.v1.1
prunus_persica Prupe.6G258300_v2.0.a1
pyrus_communis pycom04g11980 pycom12g13920
rosa_chinensis RchiOBHm_Chr3g0466241
rosa_laevigata RLG00000024594
rosa_multiflora Rmu_sc0000350.1_g000013 Rmu_sc0002249.1_g000002 Rmu_sc0017699.1_g000001 Rmu_sc0022084.1_g000005
rosa_roxburghii Rroxscaffold_6G00414700
rosa_rugosa Rorug03G0080600
rosa_samantha Rh3BG147900 Rh3DG148600
rosa_wichuraiana Rw3G011950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 3 cut(s) 141, 186, 312
AclWI GGATC 3 cut(s) 82, 220, 330
AcvI CACGTG 1 cut(s) 249
AflIII ACRYGT 2 cut(s) 246, 248
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 3 cut(s) 82, 220, 330
Aor13HI TCCGGA 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 69, 75, 161
BbrPI CACGTG 1 cut(s) 249
BccI CCATC 2 cut(s) 88, 200
BceAI ACGGC 2 cut(s) 128, 182
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BcoDI GTCTC 1 cut(s) 160
BglII AGATCT 1 cut(s) 116
BisI GCNGC 2 cut(s) 141, 312
BlsI GCNGC 2 cut(s) 142, 313
BmiI GGNNCC 1 cut(s) 190
BoxI GACNNNNGTC 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 13
Bse3DI GCAATG 2 cut(s) 17, 358
Bse8I GATNNNNATC 1 cut(s) 79
BseAI TCCGGA 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 79
BseMI GCAATG 2 cut(s) 17, 358
BseMII CTCAG 2 cut(s) 290, 344
BseRI GAGGAG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 14, 254
BsmAI GTCTC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 218
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 6 cut(s) 6, 74, 116, 225, 322, 333
BspACI CCGC 3 cut(s) 141, 186, 312
BspCNI CTCAG 2 cut(s) 291, 343
BspEI TCCGGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 3 cut(s) 82, 220, 330
BsrDI GCAATG 2 cut(s) 17, 358
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssMI GATC 6 cut(s) 6, 74, 116, 225, 322, 333
Bst6I CTCTTC 2 cut(s) 163, 236
BstBAI YACGTR 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 299, 330
BstKTI GATC 6 cut(s) 9, 77, 119, 228, 325, 336
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 6 cut(s) 6, 74, 116, 225, 322, 333
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstPAI GACNNNNGTC 1 cut(s) 249
BstX2I RGATCY 2 cut(s) 116, 322
BstYI RGATCY 2 cut(s) 116, 322
BtgZI GCGATG 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 13
CviJI RGCY 3 cut(s) 191, 305, 367
CviKI_1 RGCY 3 cut(s) 191, 305, 367
DdeI CTNAG 2 cut(s) 299, 330
DpnI GATC 6 cut(s) 8, 76, 118, 227, 324, 335
DpnII GATC 6 cut(s) 6, 74, 116, 225, 322, 333
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 163, 236
EarI CTCTTC 2 cut(s) 163, 236
EciI GGCGGA 1 cut(s) 201
Eco72I CACGTG 1 cut(s) 249
FaiI YATR 1 cut(s) 388
Fnu4HI GCNGC 2 cut(s) 141, 312
Fsp4HI GCNGC 2 cut(s) 141, 312
GluI GCNGC 2 cut(s) 141, 312
HapII CCGG 2 cut(s) 14, 254
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 3 cut(s) 97, 295, 357
HpaII CCGG 2 cut(s) 14, 254
HphI GGTGA 3 cut(s) 69, 75, 161
Hpy188I TCNGA 5 cut(s) 163, 212, 300, 333, 362
Hpy188III TCNNGA 3 cut(s) 52, 223, 254
Hpy99I CGWCG 3 cut(s) 31, 149, 212
HpyAV CCTTC 1 cut(s) 313
HpyCH4IV ACGT 2 cut(s) 29, 248
HpyCH4V TGCA 4 cut(s) 22, 203, 218, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 299, 330
HpySE526I ACGT 2 cut(s) 29, 248
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 6 cut(s) 6, 74, 116, 225, 322, 333
LmnI GCTCC 2 cut(s) 188, 266
LpnPI CCDG 5 cut(s) 27, 65, 255, 267, 386
MaeII ACGT 2 cut(s) 29, 248
MaeIII GTNAC 2 cut(s) 260, 292
MalI GATC 6 cut(s) 8, 76, 118, 227, 324, 335
MboI GATC 6 cut(s) 6, 74, 116, 225, 322, 333
MboII GAAGA 8 cut(s) 54, 57, 92, 111, 114, 150, 223, 317
MflI RGATCY 2 cut(s) 116, 322
MlyI GAGTC 2 cut(s) 289, 351
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 5 cut(s) 136, 239, 273, 281, 339
MroI TCCGGA 1 cut(s) 253
MseI TTAA 2 cut(s) 179, 369
MspI CCGG 2 cut(s) 14, 254
Mva1269I GAATGC 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 6 cut(s) 6, 74, 116, 225, 322, 333
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 260, 292
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 2 cut(s) 142, 313
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 2 cut(s) 289, 351
PmaCI CACGTG 1 cut(s) 249
PmlI CACGTG 1 cut(s) 249
PpsI GAGTC 2 cut(s) 289, 351
Ppu21I YACGTR 1 cut(s) 249
PshAI GACNNNNGTC 1 cut(s) 249
PspCI CACGTG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 2 cut(s) 116, 322
PvuI CGATCG 1 cut(s) 9
SaqAI TTAA 2 cut(s) 179, 369
SatI GCNGC 2 cut(s) 141, 312
Sau3AI GATC 6 cut(s) 6, 74, 116, 225, 322, 333
SchI GAGTC 2 cut(s) 289, 351
SetI ASST 3 cut(s) 32, 251, 369
SsiI CCGC 3 cut(s) 141, 186, 312
TaiI ACGT 2 cut(s) 32, 251
TauI GCSGC 2 cut(s) 143, 314
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 2 cut(s) 179, 369
Tru9I TTAA 2 cut(s) 179, 369
TseFI GTSAC 2 cut(s) 260, 292
Tsp45I GTSAC 2 cut(s) 260, 292
TspGWI ACGGA 4 cut(s) 118, 180, 279, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.