Rmu_sc0022084.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022084.1
OG0013084
Physical Location & Seq
Forward (+)
10812 .. 11326
515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022084.1_g000005.1.cds

Sequence Viewer

Length: 390 bp
atgtcttcttcacttctgactatgctttccgcagaaacactgaagcaaccaacgttagttggtaaccccttagcggggtcaagagctctattatggaagaggactgagaagaacaagaagcgagcattgacggtagttgcagcggttggagatgtatccgccgatagcacaccatacttgattggtggtgctgctcttgtggctctggttggaactgccttcccaatcctcttctcccgcaaggacacatgtcctgaatgcgatggggcagggttcgttcggaagtcgggggtggccttgagagccaatgcagcacggaaagaccaggctcagattgtgtgtgctaattgcaatggcctgggcaagctcaaccaagttgacaaatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.45

Weight (kDa)

9.69

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02160
fragaria_vesca FvH4_6g13360
malus_domestica MD04G1131700.v1.1 MD12G1144800.v1.1
prunus_persica Prupe.6G258300_v2.0.a1
pyrus_communis pycom04g11980 pycom12g13920
rosa_chinensis RchiOBHm_Chr3g0466241
rosa_laevigata RLG00000024594
rosa_multiflora Rmu_sc0000350.1_g000013 Rmu_sc0002249.1_g000002 Rmu_sc0017699.1_g000001 Rmu_sc0022084.1_g000005
rosa_roxburghii Rroxscaffold_6G00414700
rosa_rugosa Rorug03G0080600
rosa_samantha Rh3BG147900 Rh3DG148600
rosa_wichuraiana Rw3G011950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 30, 74, 143, 159, 238
AclI AACGTT 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 73, 74, 75
AflIII ACRYGT 1 cut(s) 248
AjnI CCWGG 2 cut(s) 324, 357
AluBI AGCT 2 cut(s) 86, 367
AluI AGCT 2 cut(s) 86, 367
Alw21I GWGCWC 1 cut(s) 88
AoxI GGCC 2 cut(s) 294, 355
ApeKI GCWGC 3 cut(s) 140, 191, 311
BanII GRGCYC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 3 cut(s) 152, 178, 323
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 2 cut(s) 326, 359
BciVI GTATCC 1 cut(s) 166
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 3 cut(s) 141, 192, 312
BlsI GCNGC 3 cut(s) 142, 193, 313
Bme1390I CCNGG 2 cut(s) 326, 359
BmrFI CCNGG 2 cut(s) 326, 359
BoxI GACNNNNGTC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 74, 75
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 2 cut(s) 326, 359
BseDI CCNNGG 1 cut(s) 358
BseLI CCNNNNNNNGG 3 cut(s) 73, 74, 75
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 2 cut(s) 96, 344
BseXI GCAGC 3 cut(s) 152, 178, 323
BshFI GGCC 2 cut(s) 296, 357
BsiHKAI GWGCWC 1 cut(s) 88
BslI CCNNNNNNNGG 3 cut(s) 73, 74, 75
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 2 cut(s) 296, 357
Bsp1286I GDGCHC 1 cut(s) 88
BspACI CCGC 5 cut(s) 30, 74, 143, 159, 238
BspANI GGCC 2 cut(s) 296, 357
BspCNI CTCAG 2 cut(s) 97, 343
BsrDI GCAATG 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 358
Bst2UI CCWGG 2 cut(s) 326, 359
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 2 cut(s) 92, 236
BstC8I GCNNGC 2 cut(s) 123, 365
BstDEI CTNAG 4 cut(s) 70, 105, 330, 387
BstEII GGTNACC 1 cut(s) 62
BstMWI GCNNNNNNNGC 3 cut(s) 200, 302, 311
BstNI CCWGG 2 cut(s) 326, 359
BstNSI RCATGY 1 cut(s) 252
BstPAI GACNNNNGTC 1 cut(s) 249
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 324, 357
BstV1I GCAGC 3 cut(s) 152, 178, 323
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 2 cut(s) 296, 357
BtgZI GCGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 123, 365
CviAII CATG 1 cut(s) 249
CviJI RGCY 7 cut(s) 86, 203, 296, 305, 329, 357, 367
CviKI_1 RGCY 7 cut(s) 86, 203, 296, 305, 329, 357, 367
DdeI CTNAG 4 cut(s) 70, 105, 330, 387
Eam1104I CTCTTC 2 cut(s) 92, 236
EarI CTCTTC 2 cut(s) 92, 236
EciI GGCGGA 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 324, 357
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 1 cut(s) 252
FaiI YATR 4 cut(s) 23, 94, 175, 250
FatI CATG 1 cut(s) 248
FauI CCCGC 2 cut(s) 67, 245
Fnu4HI GCNGC 3 cut(s) 141, 192, 312
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 3 cut(s) 141, 192, 312
GluI GCNGC 3 cut(s) 141, 192, 312
HaeIII GGCC 2 cut(s) 296, 357
Hin1II CATG 1 cut(s) 252
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 3 cut(s) 18, 282, 333
Hpy188III TCNNGA 2 cut(s) 81, 254
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 140, 311, 351
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 302, 311
HpyF3I CTNAG 4 cut(s) 70, 105, 330, 387
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 1 cut(s) 252
LpnPI CCDG 7 cut(s) 191, 255, 267, 311, 338, 344, 371
Lsp1109I GCAGC 3 cut(s) 152, 178, 323
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 62
MboII GAAGA 3 cut(s) 109, 121, 223
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 346
MmeI TCCRAC 2 cut(s) 127, 190
MnlI CCTC 2 cut(s) 93, 239
MspA1I CMGCKG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 326, 359
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 2 cut(s) 326, 359
MwoI GCNNNNNNNGC 3 cut(s) 200, 302, 311
NlaIII CATG 1 cut(s) 252
NspI RCATGY 1 cut(s) 252
PciI ACATGT 1 cut(s) 248
PctI GAATGC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 142, 193, 313
PscI ACATGT 1 cut(s) 248
PshAI GACNNNNGTC 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 88
Psp1406I AACGTT 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 324, 357
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 2 cut(s) 324, 357
SacI GAGCTC 1 cut(s) 88
SatI GCNGC 3 cut(s) 141, 192, 312
ScrFI CCNGG 2 cut(s) 326, 359
SduI GDGCHC 1 cut(s) 88
SetI ASST 3 cut(s) 56, 88, 369
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 1 cut(s) 346
SsiI CCGC 5 cut(s) 30, 74, 143, 159, 238
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 324, 357
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 56
TasI AATT 1 cut(s) 346
TscAI CASTG 1 cut(s) 45
TseI GCWGC 3 cut(s) 140, 191, 311
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 1 cut(s) 45
XceI RCATGY 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.