Rh3BG147900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0013084
Physical Location & Seq
Forward (+)
12556070 .. 12556593
524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG147900.1

Sequence Viewer

Length: 399 bp
ATGGCTTCAATGTCTTCTTCACCTCTGACTATGCTTTCCGCAGAAACACTGAAGCAACCAACGTTAGTTGGTAACCCCTTAGCGGGGTCAAGAGCTCTATTATGGAAGAGGACTGAGAAGAACAAGAAGCGAGCATTGACGGTAGTTGCAGCGGTTGGAGATGTATCCGCCGATAGCACACCATACTTGATTGGTGGTGCTGCTCTTGTGGCTCTGGTTGGAACTGCCTTCCCAATCCTCTTCTCCCGCAAGGACACATGTCCTGAATGCGATGGGGCAGGGTTCGTTCGGAAGTCGGGGGTGGCCTTGAGAGCCAATGCAGCACGGAAAGACCAGGCTCAGATTGTGTGTGCTAATTGCAATGGCCTGGGCAAGCTCAACCAAGTTGACAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.72

Weight (kDa)

9.69

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02160
fragaria_vesca FvH4_6g13360
malus_domestica MD04G1131700.v1.1 MD12G1144800.v1.1
prunus_persica Prupe.6G258300_v2.0.a1
pyrus_communis pycom04g11980 pycom12g13920
rosa_chinensis RchiOBHm_Chr3g0466241
rosa_laevigata RLG00000024594
rosa_multiflora Rmu_sc0000350.1_g000013 Rmu_sc0002249.1_g000002 Rmu_sc0017699.1_g000001 Rmu_sc0022084.1_g000005
rosa_roxburghii Rroxscaffold_6G00414700
rosa_rugosa Rorug03G0080600
rosa_samantha Rh3BG147900 Rh3DG148600
rosa_wichuraiana Rw3G011950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 39, 83, 152, 168, 247
AclI AACGTT 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 71
AfiI CCNNNNNNNGG 3 cut(s) 82, 83, 84
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 1 cut(s) 9
AjnI CCWGG 2 cut(s) 333, 366
AluBI AGCT 2 cut(s) 95, 376
AluI AGCT 2 cut(s) 95, 376
Alw21I GWGCWC 1 cut(s) 97
AoxI GGCC 2 cut(s) 303, 364
ApeKI GCWGC 3 cut(s) 149, 200, 320
AsuHPI GGTGA 1 cut(s) 12
BanII GRGCYC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 161, 187, 332
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 2 cut(s) 335, 368
BciVI GTATCC 1 cut(s) 175
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 3 cut(s) 150, 201, 321
BlsI GCNGC 3 cut(s) 151, 202, 322
Bme1390I CCNGG 2 cut(s) 335, 368
BmrFI CCNGG 2 cut(s) 335, 368
BoxI GACNNNNGTC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 6
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 367
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 83, 84
Bse3DI GCAATG 1 cut(s) 367
BseBI CCWGG 2 cut(s) 335, 368
BseDI CCNNGG 1 cut(s) 367
BseLI CCNNNNNNNGG 3 cut(s) 82, 83, 84
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 105, 353
BseXI GCAGC 3 cut(s) 161, 187, 332
BshFI GGCC 2 cut(s) 305, 366
BsiHKAI GWGCWC 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 82, 83, 84
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 2 cut(s) 305, 366
Bsp1286I GDGCHC 1 cut(s) 97
BspACI CCGC 5 cut(s) 39, 83, 152, 168, 247
BspANI GGCC 2 cut(s) 305, 366
BspCNI CTCAG 2 cut(s) 106, 352
BsrDI GCAATG 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 367
Bst2UI CCWGG 2 cut(s) 335, 368
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 101, 245
BstC8I GCNNGC 2 cut(s) 132, 374
BstDEI CTNAG 4 cut(s) 79, 114, 339, 396
BstEII GGTNACC 1 cut(s) 71
BstMWI GCNNNNNNNGC 3 cut(s) 209, 311, 320
BstNI CCWGG 2 cut(s) 335, 368
BstNSI RCATGY 1 cut(s) 261
BstPAI GACNNNNGTC 1 cut(s) 258
BstPI GGTNACC 1 cut(s) 71
BstSCI CCNGG 2 cut(s) 333, 366
BstV1I GCAGC 3 cut(s) 161, 187, 332
BstV2I GAAGAC 1 cut(s) 6
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 305, 366
BtgZI GCGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 2 cut(s) 132, 374
CviAII CATG 1 cut(s) 258
CviJI RGCY 8 cut(s) 5, 95, 212, 305, 314, 338, 366, 376
CviKI_1 RGCY 8 cut(s) 5, 95, 212, 305, 314, 338, 366, 376
DdeI CTNAG 4 cut(s) 79, 114, 339, 396
Eam1104I CTCTTC 2 cut(s) 101, 245
EarI CTCTTC 2 cut(s) 101, 245
EciI GGCGGA 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 71
EcoRII CCWGG 2 cut(s) 333, 366
EcoT38I GRGCYC 1 cut(s) 97
FaeI CATG 1 cut(s) 261
FaiI YATR 4 cut(s) 32, 103, 184, 259
FatI CATG 1 cut(s) 257
FauI CCCGC 2 cut(s) 76, 254
Fnu4HI GCNGC 3 cut(s) 150, 201, 321
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 3 cut(s) 150, 201, 321
GluI GCNGC 3 cut(s) 150, 201, 321
HaeIII GGCC 2 cut(s) 305, 366
Hin1II CATG 1 cut(s) 261
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 3 cut(s) 27, 291, 342
Hpy188III TCNNGA 2 cut(s) 90, 263
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 149, 320, 360
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 311, 320
HpyF3I CTNAG 4 cut(s) 79, 114, 339, 396
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 261
LpnPI CCDG 7 cut(s) 200, 264, 276, 320, 347, 353, 380
Lsp1109I GCAGC 3 cut(s) 161, 187, 332
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 71
MboII GAAGA 5 cut(s) 6, 9, 118, 130, 232
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 1 cut(s) 355
MmeI TCCRAC 2 cut(s) 136, 199
MnlI CCTC 3 cut(s) 33, 102, 248
MspA1I CMGCKG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 335, 368
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 2 cut(s) 335, 368
MwoI GCNNNNNNNGC 3 cut(s) 209, 311, 320
NlaIII CATG 1 cut(s) 261
NspI RCATGY 1 cut(s) 261
PciI ACATGT 1 cut(s) 257
PctI GAATGC 1 cut(s) 272
PkrI GCNGC 3 cut(s) 151, 202, 322
PscI ACATGT 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 97
Psp1406I AACGTT 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 333, 366
PspEI GGTNACC 1 cut(s) 71
PspGI CCWGG 2 cut(s) 333, 366
SacI GAGCTC 1 cut(s) 97
SatI GCNGC 3 cut(s) 150, 201, 321
ScrFI CCNGG 2 cut(s) 335, 368
SduI GDGCHC 1 cut(s) 97
SetI ASST 4 cut(s) 25, 65, 97, 378
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 1 cut(s) 355
SsiI CCGC 5 cut(s) 39, 83, 152, 168, 247
SstI GAGCTC 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 333, 366
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 65
TasI AATT 1 cut(s) 355
TscAI CASTG 1 cut(s) 54
TseI GCWGC 3 cut(s) 149, 200, 320
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 1 cut(s) 54
XceI RCATGY 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.