pycom12g13920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013084
Physical Location & Seq
Reverse (-)
16390528 .. 16391035
508 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g13920.2

Sequence Viewer

Length: 381 bp
ATGGGATCAATGTCTTCACCTCTGACGATGATTTCTGCACAGCCGCTGAAACAGTCGGCGGCAGTGGTTGTCCGGAGCCCCTCCCTCTTCAGAATGCACTCTGAAAAGAAGAAATCGTTGACGGTGGTTGCTGCCATTGGAGATGTATCAGCTGATGGAACGCCCTACCTGATTGCCGGTGCTGCTGCTGTTGCTTTGCTTGGCACTGCATTTCCAATCCTCTTCTCCAGGAAGGACCTGTGTCCCGAATGCGATGGGGCAGGTTTCGTTCGGAAGGGAGGGGCAACTTTGAGAGCAAATGCAGCGAGGAAGGACGAGGCTCAGATCGTCTGTGTTCGTTGCAATGGCCTTGGCAAGCTCAACCAAGTCGACAAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.15

Weight (kDa)

9.74

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02160
fragaria_vesca FvH4_6g13360
malus_domestica MD04G1131700.v1.1 MD12G1144800.v1.1
prunus_persica Prupe.6G258300_v2.0.a1
pyrus_communis pycom04g11980 pycom12g13920
rosa_chinensis RchiOBHm_Chr3g0466241
rosa_laevigata RLG00000024594
rosa_multiflora Rmu_sc0000350.1_g000013 Rmu_sc0002249.1_g000002 Rmu_sc0017699.1_g000001 Rmu_sc0022084.1_g000005
rosa_roxburghii Rroxscaffold_6G00414700
rosa_rugosa Rorug03G0080600
rosa_samantha Rh3BG147900 Rh3DG148600
rosa_wichuraiana Rw3G011950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 369
AccIII TCCGGA 1 cut(s) 72
AciI CCGC 2 cut(s) 44, 59
AclWI GGATC 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 73
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 2 cut(s) 152, 358
AluI AGCT 2 cut(s) 152, 358
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 46
Aor13HI TCCGGA 1 cut(s) 72
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 4 cut(s) 131, 182, 185, 302
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 9
AvaII GGWCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 118, 169, 172, 314
BccI CCATC 2 cut(s) 149, 248
BciT130I CCWGG 1 cut(s) 229
BfuAI ACCTGC 1 cut(s) 251
BisI GCNGC 6 cut(s) 44, 60, 132, 183, 186, 303
BlsI GCNGC 6 cut(s) 45, 61, 133, 184, 187, 304
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 229
BoxI GACNNNNGTC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 349
BsaWI WCCGGW 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 349
BseAI TCCGGA 1 cut(s) 72
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 335
BseXI GCAGC 4 cut(s) 118, 169, 172, 314
BsgI GTGCAG 1 cut(s) 21
BshFI GGCC 1 cut(s) 348
BsiSI CCGG 2 cut(s) 73, 177
BslFI GGGAC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 228
BsmI GAATGC 2 cut(s) 99, 254
BsnI GGCC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 80
Bsp13I TCCGGA 1 cut(s) 72
Bsp143I GATC 2 cut(s) 5, 324
BspACI CCGC 2 cut(s) 44, 59
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 334
BspEI TCCGGA 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 251
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 2 cut(s) 5, 324
BssT1I CCWWGG 1 cut(s) 349
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 2 cut(s) 54, 124
Bst6I CTCTTC 2 cut(s) 92, 227
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 321
BstKTI GATC 2 cut(s) 8, 327
BstMBI GATC 2 cut(s) 5, 324
BstMWI GCNNNNNNNGC 3 cut(s) 182, 191, 302
BstNI CCWGG 1 cut(s) 229
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 118, 169, 172, 314
BstV2I GAAGAC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 348
BtgZI GCGATG 1 cut(s) 267
BtsI GCAGTG 2 cut(s) 69, 204
BtsIMutI CAGTG 2 cut(s) 69, 204
BveI ACCTGC 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 356
CaiI CAGNNNCTG 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 235
CviJI RGCY 6 cut(s) 43, 78, 152, 320, 348, 358
CviKI_1 RGCY 6 cut(s) 43, 78, 152, 320, 348, 358
DdeI CTNAG 1 cut(s) 321
DpnI GATC 2 cut(s) 7, 326
DpnII GATC 2 cut(s) 5, 324
Eam1104I CTCTTC 2 cut(s) 92, 227
EarI CTCTTC 2 cut(s) 92, 227
Eco130I CCWWGG 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 349
FaqI GGGAC 1 cut(s) 228
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 6 cut(s) 44, 60, 132, 183, 186, 303
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 6 cut(s) 44, 60, 132, 183, 186, 303
GluI GCNGC 6 cut(s) 44, 60, 132, 183, 186, 303
GsuI CTGGAG 1 cut(s) 211
HaeIII GGCC 1 cut(s) 348
HapII CCGG 2 cut(s) 73, 177
HincII GTYRAC 2 cut(s) 120, 370
HindII GTYRAC 2 cut(s) 120, 370
HpaII CCGG 2 cut(s) 73, 177
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 120, 370
Hpy188I TCNGA 5 cut(s) 24, 92, 103, 273, 324
Hpy188III TCNNGA 2 cut(s) 73, 245
Hpy8I GTNNAC 2 cut(s) 120, 370
HpyAV CCTTC 3 cut(s) 226, 268, 304
HpyCH4III ACNGT 2 cut(s) 54, 124
HpyCH4V TGCA 5 cut(s) 38, 97, 209, 302, 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 191, 302
HpyF3I CTNAG 1 cut(s) 321
Kpn2I TCCGGA 1 cut(s) 72
Kzo9I GATC 2 cut(s) 5, 324
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 7 cut(s) 86, 182, 190, 214, 241, 246, 251
Lsp1109I GCAGC 4 cut(s) 118, 169, 172, 314
MalI GATC 2 cut(s) 7, 326
MboI GATC 2 cut(s) 5, 324
MboII GAAGA 4 cut(s) 6, 79, 121, 214
MhlI GDGCHC 1 cut(s) 80
MnlI CCTC 7 cut(s) 30, 91, 95, 230, 272, 300, 310
MroI TCCGGA 1 cut(s) 72
MspA1I CMGCKG 2 cut(s) 46, 152
MspI CCGG 2 cut(s) 73, 177
MspR9I CCNGG 1 cut(s) 229
Mva1269I GAATGC 2 cut(s) 99, 254
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 3 cut(s) 182, 191, 302
NdeII GATC 2 cut(s) 5, 324
NlaIV GGNNCC 1 cut(s) 77
PctI GAATGC 2 cut(s) 99, 254
PfoI TCCNGGA 1 cut(s) 227
PkrI GCNGC 6 cut(s) 45, 61, 133, 184, 187, 304
PpuMI RGGWCCY 1 cut(s) 235
PshAI GACNNNNGTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 152
SalI GTCGAC 1 cut(s) 368
SatI GCNGC 6 cut(s) 44, 60, 132, 183, 186, 303
Sau3AI GATC 2 cut(s) 5, 324
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 229
SduI GDGCHC 1 cut(s) 80
SetI ASST 6 cut(s) 22, 154, 171, 240, 265, 360
SinI GGWCC 1 cut(s) 235
SsiI CCGC 2 cut(s) 44, 59
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 54, 124
TaqI TCGA 1 cut(s) 369
TauI GCSGC 2 cut(s) 46, 62
TscAI CASTG 2 cut(s) 69, 211
TseI GCWGC 4 cut(s) 131, 182, 185, 302
TspRI CASTG 2 cut(s) 69, 211
VpaK11BI GGWCC 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.