Prupe.6G258300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013084
Physical Location & Seq
Reverse (-)
25023270 .. 25024440
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G258300.1

Sequence Viewer

Length: 414 bp
ATGGGATCAATGTCTTCTCCTCTGACTATCATTTCTGCAGAGCCACTGAAGCAACCGGTTGCGGTCGGCCGCAGCAGCCCCTCTCTCTTGACGACACAGGCAGGGTCAAAATCTCTGTTGTGGAATTCTAGGATTGAGAAGAAGAGAGCATTGACTGTGGTTGCTGCCATTGGAGATGTATCTGCTGATGGCACCCCCTACCTGATAGCTGGAGCTGCTGCAGTGGCTCTGCTTGGAACTGCCTTCCCAATTATCTTCTCCCGCAAGGACCTGTGTCCCGAATGCGATGGGGCGGGTTTCGTTCGGAAGTCAGGGGTGACCCTGAGAGCTAATGCAGCACGGAAGGACGAGGCTCAGATTGTCTGTGCTCGGTGCAATGGCCTTGGCAAGCTCAACCAAATCGACAAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.27

Weight (kDa)

9.74

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02160
fragaria_vesca FvH4_6g13360
malus_domestica MD04G1131700.v1.1 MD12G1144800.v1.1
prunus_persica Prupe.6G258300_v2.0.a1
pyrus_communis pycom04g11980 pycom12g13920
rosa_chinensis RchiOBHm_Chr3g0466241
rosa_laevigata RLG00000024594
rosa_multiflora Rmu_sc0000350.1_g000013 Rmu_sc0002249.1_g000002 Rmu_sc0017699.1_g000001 Rmu_sc0022084.1_g000005
rosa_roxburghii Rroxscaffold_6G00414700
rosa_rugosa Rorug03G0080600
rosa_samantha Rh3BG147900 Rh3DG148600
rosa_wichuraiana Rw3G011950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AciI CCGC 4 cut(s) 62, 70, 262, 293
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 68
AgeI ACCGGT 1 cut(s) 55
AluBI AGCT 4 cut(s) 209, 215, 329, 391
AluI AGCT 4 cut(s) 209, 215, 329, 391
Alw21I GWGCWC 1 cut(s) 370
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 67, 379
ApeKI GCWGC 6 cut(s) 72, 75, 164, 215, 218, 335
ApoI RAATTY 1 cut(s) 124
AsiGI ACCGGT 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 6 cut(s) 84, 87, 151, 202, 205, 347
BccI CCATC 2 cut(s) 182, 281
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 2 cut(s) 36, 219
BisI GCNGC 7 cut(s) 70, 73, 76, 165, 216, 219, 336
BlsI GCNGC 7 cut(s) 71, 74, 77, 166, 217, 220, 337
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 193
BoxI GACNNNNGTC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 314, 368
BseRI GAGGAG 1 cut(s) 9
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 6 cut(s) 84, 87, 151, 202, 205, 347
Bsh1285I CGRYCG 2 cut(s) 66, 70
BshFI GGCC 2 cut(s) 69, 381
BshNI GGYRCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 55
BsiEI CGRYCG 2 cut(s) 66, 70
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 2 cut(s) 69, 381
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 1 cut(s) 5
BspACI CCGC 4 cut(s) 62, 70, 262, 293
BspANI GGCC 2 cut(s) 69, 381
BspCNI CTCAG 2 cut(s) 315, 367
BspLI GGNNCC 1 cut(s) 193
BspMAI CTGCAG 2 cut(s) 40, 223
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 382
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 323, 354
BstEII GGTNACC 1 cut(s) 316
BstKTI GATC 1 cut(s) 8
BstMBI GATC 1 cut(s) 5
BstMCI CGRYCG 2 cut(s) 66, 70
BstMWI GCNNNNNNNGC 5 cut(s) 49, 75, 215, 224, 335
BstPAI GACNNNNGTC 1 cut(s) 273
BstPI GGTNACC 1 cut(s) 316
BstSFI CTRYAG 2 cut(s) 36, 219
BstV1I GCAGC 6 cut(s) 84, 87, 151, 202, 205, 347
BstV2I GAAGAC 1 cut(s) 6
BstZI CGGCCG 1 cut(s) 67
BsuRI GGCC 2 cut(s) 69, 381
BtgZI GCGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 44, 228
Cac8I GCNNGC 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 268
CspAI ACCGGT 1 cut(s) 55
DdeI CTNAG 2 cut(s) 323, 354
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
EaeI YGGCCR 1 cut(s) 67
EagI CGGCCG 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EclXI CGGCCG 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 268
Eco52I CGGCCG 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaqI GGGAC 1 cut(s) 261
FauI CCCGC 2 cut(s) 269, 286
Fnu4HI GCNGC 7 cut(s) 70, 73, 76, 165, 216, 219, 336
Fsp4HI GCNGC 7 cut(s) 70, 73, 76, 165, 216, 219, 336
FspBI CTAG 1 cut(s) 129
GluI GCNGC 7 cut(s) 70, 73, 76, 165, 216, 219, 336
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 2 cut(s) 69, 381
HapII CCGG 1 cut(s) 56
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 24, 306, 357
Hpy188III TCNNGA 2 cut(s) 88, 278
HpyAV CCTTC 2 cut(s) 253, 337
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 38, 221, 335, 375
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 75, 215, 224, 335
HpyF3I CTNAG 2 cut(s) 323, 354
Kzo9I GATC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 8 cut(s) 69, 83, 87, 195, 215, 284, 297, 335
Lsp1109I GCAGC 6 cut(s) 84, 87, 151, 202, 205, 347
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 4 cut(s) 6, 151, 154, 247
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 2 cut(s) 124, 249
MnlI CCTC 3 cut(s) 30, 91, 343
MspI CCGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 287
MwoI GCNNNNNNNGC 5 cut(s) 49, 75, 215, 224, 335
NdeII GATC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 316
PctI GAATGC 1 cut(s) 287
PinAI ACCGGT 1 cut(s) 55
PkrI GCNGC 7 cut(s) 71, 74, 77, 166, 217, 220, 337
PpuMI RGGWCCY 1 cut(s) 268
PshAI GACNNNNGTC 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 268
PspEI GGTNACC 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 268
PspPPI RGGWCCY 1 cut(s) 268
PstI CTGCAG 2 cut(s) 40, 223
SatI GCNGC 7 cut(s) 70, 73, 76, 165, 216, 219, 336
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 1 cut(s) 268
SduI GDGCHC 1 cut(s) 370
SetI ASST 6 cut(s) 204, 211, 217, 273, 331, 393
SfcI CTRYAG 2 cut(s) 36, 219
SinI GGWCC 1 cut(s) 268
Sse9I AATT 2 cut(s) 124, 249
SsiI CCGC 4 cut(s) 62, 70, 262, 293
SspMI CTAG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 402
TasI AATT 2 cut(s) 124, 249
TauI GCSGC 1 cut(s) 72
TscAI CASTG 2 cut(s) 51, 228
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 6 cut(s) 72, 75, 164, 215, 218, 335
Tsp45I GTSAC 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 2 cut(s) 51, 228
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 124
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.