MD04G1131700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013084
Physical Location & Seq
Reverse (-)
21861423 .. 21862484
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1131700.v1.1.491

Sequence Viewer

Length: 381 bp
ATGGGATCAATGTCTTCTCCTCTGACAATGATTTCTCCACAACCATTGAAACAGTCGGCAGTGGCGGTCGGCCGGAGCCCCTCCCTCTTCAGAATGCACTCTGAAAAGAAGAAACCGTCAACGGTGGTTGCTGCTATTGGAGATGTATCAGCCAATGGCACCCCTTACCTGATTGCTGGTGCTGCTGCTGTTGCTTTGCTTGGAACTGCGTTTCCAATCCTCTTCTCCCGGAAGGACCTGTGTCCAGAATGCGACGGAGCAGGTTTTGTTCGGAAGGGAGGGGCAACTTTGAGAGCAAATGCAGCGAGGAAGGACGAGGCTCAGATCGTCTGTGCTCGTTGCAATGGCCTTGGCAAGCTCAACCAAGTAGACAAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.09

Weight (kDa)

9.89

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02160
fragaria_vesca FvH4_6g13360
malus_domestica MD04G1131700.v1.1 MD12G1144800.v1.1
prunus_persica Prupe.6G258300_v2.0.a1
pyrus_communis pycom04g11980 pycom12g13920
rosa_chinensis RchiOBHm_Chr3g0466241
rosa_laevigata RLG00000024594
rosa_multiflora Rmu_sc0000350.1_g000013 Rmu_sc0002249.1_g000002 Rmu_sc0017699.1_g000001 Rmu_sc0022084.1_g000005
rosa_roxburghii Rroxscaffold_6G00414700
rosa_rugosa Rorug03G0080600
rosa_samantha Rh3BG147900 Rh3DG148600
rosa_wichuraiana Rw3G011950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 369
AciI CCGC 1 cut(s) 65
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 196, 228
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
Alw21I GWGCWC 1 cut(s) 337
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 70, 346
ApeKI GCWGC 4 cut(s) 131, 182, 185, 302
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 229
AvaII GGWCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 4 cut(s) 118, 169, 172, 314
BcnI CCSGG 1 cut(s) 229
BfuAI ACCTGC 1 cut(s) 251
BisI GCNGC 4 cut(s) 132, 183, 186, 303
BlsI GCNGC 4 cut(s) 133, 184, 187, 304
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 77, 160
BmrFI CCNGG 1 cut(s) 229
BoxI GACNNNNGTC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 9
BseX3I CGGCCG 1 cut(s) 70
BseXI GCAGC 4 cut(s) 118, 169, 172, 314
Bsh1285I CGRYCG 2 cut(s) 69, 73
BshFI GGCC 2 cut(s) 72, 348
BshNI GGYRCC 1 cut(s) 158
BsiEI CGRYCG 2 cut(s) 69, 73
BsiHKAI GWGCWC 1 cut(s) 337
BsiSI CCGG 2 cut(s) 73, 229
BsmI GAATGC 2 cut(s) 99, 254
BsnI GGCC 2 cut(s) 72, 348
Bsp1286I GDGCHC 2 cut(s) 80, 337
Bsp143I GATC 2 cut(s) 5, 324
BspACI CCGC 1 cut(s) 65
BspANI GGCC 2 cut(s) 72, 348
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 77, 160
BspMI ACCTGC 1 cut(s) 251
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 2 cut(s) 5, 324
BssT1I CCWWGG 1 cut(s) 349
Bst4CI ACNGT 3 cut(s) 54, 117, 124
Bst6I CTCTTC 2 cut(s) 92, 227
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 321
BstKTI GATC 2 cut(s) 8, 327
BstMBI GATC 2 cut(s) 5, 324
BstMCI CGRYCG 2 cut(s) 69, 73
BstMWI GCNNNNNNNGC 3 cut(s) 182, 191, 302
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 118, 169, 172, 314
BstV2I GAAGAC 1 cut(s) 6
BstZI CGGCCG 1 cut(s) 70
BsuRI GGCC 2 cut(s) 72, 348
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 235
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviJI RGCY 6 cut(s) 72, 78, 152, 320, 348, 358
CviKI_1 RGCY 6 cut(s) 72, 78, 152, 320, 348, 358
DdeI CTNAG 1 cut(s) 321
DpnI GATC 2 cut(s) 7, 326
DpnII GATC 2 cut(s) 5, 324
EaeI YGGCCR 1 cut(s) 70
EagI CGGCCG 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 92, 227
EarI CTCTTC 2 cut(s) 92, 227
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 235
Eco52I CGGCCG 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 349
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 4 cut(s) 132, 183, 186, 303
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 132, 183, 186, 303
GluI GCNGC 4 cut(s) 132, 183, 186, 303
HaeIII GGCC 2 cut(s) 72, 348
HapII CCGG 2 cut(s) 73, 229
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HpaII CCGG 2 cut(s) 73, 229
Hpy166II GTNNAC 2 cut(s) 120, 370
Hpy188I TCNGA 5 cut(s) 24, 92, 103, 273, 324
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 2 cut(s) 120, 370
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 3 cut(s) 226, 268, 304
HpyCH4III ACNGT 3 cut(s) 54, 117, 124
HpyCH4V TGCA 3 cut(s) 97, 302, 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 191, 302
HpyF3I CTNAG 1 cut(s) 321
Kzo9I GATC 2 cut(s) 5, 324
LmnI GCTCC 2 cut(s) 75, 257
LpnPI CCDG 7 cut(s) 86, 162, 182, 242, 246, 251, 258
Lsp1109I GCAGC 4 cut(s) 118, 169, 172, 314
MalI GATC 2 cut(s) 7, 326
MboI GATC 2 cut(s) 5, 324
MboII GAAGA 4 cut(s) 6, 79, 121, 214
MhlI GDGCHC 2 cut(s) 80, 337
MnlI CCTC 7 cut(s) 30, 91, 95, 230, 272, 300, 310
MspI CCGG 2 cut(s) 73, 229
MspR9I CCNGG 1 cut(s) 229
Mva1269I GAATGC 2 cut(s) 99, 254
MwoI GCNNNNNNNGC 3 cut(s) 182, 191, 302
NciI CCSGG 1 cut(s) 229
NdeII GATC 2 cut(s) 5, 324
NlaIV GGNNCC 2 cut(s) 77, 160
PctI GAATGC 2 cut(s) 99, 254
PfoI TCCNGGA 1 cut(s) 227
PkrI GCNGC 4 cut(s) 133, 184, 187, 304
PpuMI RGGWCCY 1 cut(s) 235
PshAI GACNNNNGTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 77, 160
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
SatI GCNGC 4 cut(s) 132, 183, 186, 303
Sau3AI GATC 2 cut(s) 5, 324
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 229
SduI GDGCHC 2 cut(s) 80, 337
SetI ASST 4 cut(s) 171, 240, 265, 360
SinI GGWCC 1 cut(s) 235
SsiI CCGC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 3 cut(s) 54, 117, 124
TscAI CASTG 1 cut(s) 66
TseI GCWGC 4 cut(s) 131, 182, 185, 302
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.