AT5G02640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012391
Physical Location & Seq
Reverse (-)
594123 .. 595056
934 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02640.1

Sequence Viewer

Length: 486 bp
ATGAACTCAGTGTGTATCTCCAGCTGCATCAACGATGCACACGACCCTCGCGTGCCGGTTCGTCCTGTACGTGCCTCCTACGTGAATCTCTATAAGTGGCCGGAGTCCGACGCCGAGTTCGTCAGGTCCGTACGTCGTGGAGGCGGCCTACCGGCGGCCCGTGTAGTTGATAGCATATCTTGTCGACAGATGTATCTCCGTAGCTACACTTTCTCTCGGGAAGACGACGAGAGCAAATCGGAGAAGGTGTCGTCTGGGACGCAGACGTCGTGTCTAGGGAGAGTTAAGGGAACAGCGTCGTCTCGACGTAAGAGTAAGGAGGAAAATGGCATCATCATCGTTGAGAGTACAAAGCCGCGTCGTCGTGGTGAGAAGAGGAGAGTTAGTAGGAAGAACAAACAAGAACAAGCTTGTTCTGTTATTTTAAGGATTTTTCGAAGGTTATTATCTTGTGCTGCTACCGTTGATGTTGTTGATCCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.12

Weight (kDa)

10.03

Isoelectric Point (pI)

77.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02640
fragaria_vesca FvH4_6g14750
malus_domestica MD04G1116500.v1.1 MD12G1132300.v1.1
prunus_persica Prupe.4G261600_v2.0.a1 Prupe.4G261600_v2.0.a1 Prupe.6G246400_v2.0.a1
pyrus_communis pycom12g12820
rosa_chinensis RchiOBHm_Chr3g0467961
rosa_laevigata RLG00000024463
rosa_multiflora Rmu_sc0006017.1_g000003 Rmu_sc0034877.1_g000002
rosa_roxburghii Rroxscaffold_6G00413250
rosa_rugosa Rorug03G0090700
rosa_samantha Rh3AG139400 Rh3BG160900 Rh3CG160800 Rh3DG161400
rosa_wichuraiana Rw3G013190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 265
AatII GACGTC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 184
AccII CGCG 2 cut(s) 51, 358
AciI CCGC 3 cut(s) 144, 155, 356
AclWI GGATC 1 cut(s) 470
AcoI YGGCCR 1 cut(s) 98
AcyI GRCGYC 2 cut(s) 111, 266
AfaI GTAC 3 cut(s) 69, 132, 349
AfiI CCNNNNNNNGG 1 cut(s) 154
AhdI GACNNNNNGTC 1 cut(s) 270
AluBI AGCT 3 cut(s) 24, 204, 410
AluI AGCT 3 cut(s) 24, 204, 410
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 3 cut(s) 98, 145, 156
ApeKI GCWGC 2 cut(s) 24, 455
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspS9I GGNCC 2 cut(s) 126, 157
AsuHPI GGTGA 1 cut(s) 380
AsuII TTCGAA 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 1 cut(s) 126
BaeI ACNNNNGTAYC 2 cut(s) 176, 209
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 11, 442
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 275
BisI GCNGC 5 cut(s) 25, 145, 156, 356, 456
BlsI GCNGC 5 cut(s) 26, 146, 157, 357, 457
Bme18I GGWCC 1 cut(s) 126
BmeRI GACNNNNNGTC 1 cut(s) 270
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 126, 157
BmsI GCATC 3 cut(s) 25, 36, 339
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 4
Bpu14I TTCGAA 1 cut(s) 436
BsaAI YACGTR 2 cut(s) 71, 82
BsaHI GRCGYC 2 cut(s) 111, 266
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 370, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 2 cut(s) 55, 151
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 391
BseXI GCAGC 2 cut(s) 11, 442
Bsh1236I CGCG 2 cut(s) 51, 358
BshFI GGCC 3 cut(s) 100, 147, 158
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 3 cut(s) 56, 101, 152
BsiWI CGTACG 1 cut(s) 130
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 306
BsmBI CGTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 3 cut(s) 100, 147, 158
BsoBI CYCGRG 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 436
Bsp143I GATC 1 cut(s) 475
BspACI CCGC 3 cut(s) 144, 155, 356
BspANI GGCC 3 cut(s) 100, 147, 158
BspCNI CTCAG 1 cut(s) 20
BspFNI CGCG 2 cut(s) 51, 358
BspPI GGATC 1 cut(s) 470
BspT104I TTCGAA 1 cut(s) 436
BsrFI RCCGGY 2 cut(s) 55, 151
BssAI RCCGGY 2 cut(s) 55, 151
BssMI GATC 1 cut(s) 475
BssNI GRCGYC 2 cut(s) 111, 266
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 1 cut(s) 368
BstACI GRCGYC 2 cut(s) 111, 266
BstBAI YACGTR 2 cut(s) 71, 82
BstBI TTCGAA 1 cut(s) 436
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 7
BstFNI CGCG 2 cut(s) 51, 358
BstKTI GATC 1 cut(s) 478
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 475
BstUI CGCG 2 cut(s) 51, 358
BstV1I GCAGC 2 cut(s) 11, 442
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 3 cut(s) 100, 147, 158
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 53
Cfr10I RCCGGY 2 cut(s) 55, 151
Cfr13I GGNCC 2 cut(s) 126, 157
CseI GACGC 4 cut(s) 119, 268, 285, 347
Csp6I GTAC 3 cut(s) 68, 131, 348
CviJI RGCY 7 cut(s) 24, 100, 147, 158, 204, 355, 410
CviKI_1 RGCY 7 cut(s) 24, 100, 147, 158, 204, 355, 410
CviQI GTAC 3 cut(s) 68, 131, 348
DdeI CTNAG 1 cut(s) 7
DpnI GATC 1 cut(s) 477
DpnII GATC 1 cut(s) 475
DrdI GACNNNNNNGTC 1 cut(s) 265
DriI GACNNNNNGTC 1 cut(s) 270
DseDI GACNNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 368
Eam1105I GACNNNNNGTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 306
FaiI YATR 2 cut(s) 93, 176
FaqI GGGAC 1 cut(s) 271
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 5 cut(s) 25, 145, 156, 356, 456
Fsp4HI GCNGC 5 cut(s) 25, 145, 156, 356, 456
FspBI CTAG 1 cut(s) 275
GluI GCNGC 5 cut(s) 25, 145, 156, 356, 456
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 3 cut(s) 100, 147, 158
HapII CCGG 3 cut(s) 56, 101, 152
HgaI GACGC 4 cut(s) 119, 268, 285, 347
Hin1I GRCGYC 2 cut(s) 111, 266
HincII GTYRAC 1 cut(s) 185
HindII GTYRAC 1 cut(s) 185
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 2 cut(s) 85, 104
HpaII CCGG 3 cut(s) 56, 101, 152
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 109, 241
Hpy188III TCNNGA 2 cut(s) 218, 303
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 8 cut(s) 113, 138, 230, 271, 301, 309, 363, 366
HpyAV CCTTC 2 cut(s) 238, 432
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4IV ACGT 5 cut(s) 70, 81, 133, 266, 307
HpyCH4V TGCA 2 cut(s) 27, 38
HpyF3I CTNAG 1 cut(s) 7
HpySE526I ACGT 5 cut(s) 70, 81, 133, 266, 307
Hsp92I GRCGYC 2 cut(s) 111, 266
Kzo9I GATC 1 cut(s) 475
LpnPI CCDG 7 cut(s) 34, 69, 78, 109, 114, 165, 240
Lsp1109I GCAGC 2 cut(s) 11, 442
LweI GCATC 3 cut(s) 25, 36, 339
MaeI CTAG 1 cut(s) 275
MaeII ACGT 5 cut(s) 70, 81, 133, 266, 307
MalI GATC 1 cut(s) 477
MboI GATC 1 cut(s) 475
MboII GAAGA 3 cut(s) 233, 385, 403
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 5 cut(s) 57, 85, 134, 313, 369
MseI TTAA 2 cut(s) 285, 425
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 3 cut(s) 56, 101, 152
MvnI CGCG 2 cut(s) 51, 358
NdeII GATC 1 cut(s) 475
NmeAIII GCCGAG 1 cut(s) 139
NspV TTCGAA 1 cut(s) 436
PcsI WCGNNNNNNNCGW 6 cut(s) 39, 48, 67, 117, 126, 266
PfeI GAWTC 1 cut(s) 85
Pfl23II CGTACG 1 cut(s) 130
PkrI GCNGC 5 cut(s) 26, 146, 157, 357, 457
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Ppu21I YACGTR 2 cut(s) 71, 82
PspLI CGTACG 1 cut(s) 130
PspPI GGNCC 2 cut(s) 126, 157
PvuII CAGCTG 1 cut(s) 24
RsaI GTAC 3 cut(s) 69, 132, 349
RsaNI GTAC 3 cut(s) 68, 131, 348
SalI GTCGAC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 285, 425
SatI GCNGC 5 cut(s) 25, 145, 156, 356, 456
Sau3AI GATC 1 cut(s) 475
Sau96I GGNCC 2 cut(s) 126, 157
SchI GAGTC 1 cut(s) 113
SfaNI GCATC 3 cut(s) 25, 36, 339
SfuI TTCGAA 1 cut(s) 436
SinI GGWCC 1 cut(s) 126
SsiI CCGC 3 cut(s) 144, 155, 356
SspMI CTAG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 463
TaiI ACGT 5 cut(s) 73, 84, 136, 269, 310
TaqI TCGA 3 cut(s) 184, 304, 436
TatI WGTACW 1 cut(s) 347
TauI GCSGC 3 cut(s) 147, 158, 358
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 285, 425
Tru9I TTAA 2 cut(s) 285, 425
TscAI CASTG 1 cut(s) 15
TseI GCWGC 2 cut(s) 24, 455
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 118, 188
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 1 cut(s) 275
ZraI GACGTC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.