Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001873

Physical Location & Seq

Genomic Coordinates Forward (+)

7060997 .. 7067430

Gene Structure 6434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0090700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGGCAAACATGAGGTTGCTGCTGTTTCTGGCTTTGTGCTCTGGGATTCAAGTGGTGTTCTCCGATGACGCAGCTGCTGGGCTTCAATCGTTAAAGGCCGTGTGGCGAAATTATCCACCCAGCTGGGACCGGTCAAGTGATTACTGTGGGTGGGAAGGAATCACCTGCAATCAGGGATCCAGTGTGACTGCAATGAGATTATCAGGCATGGGCCTGGTAGGGGATCTTAGTGGCGACATTGGGGCATTTACTGAATTAACATCCTTGGACCTTTCATTCAACCCTGGACTTACTGGTCCTCTCTCTCCACAATTAGGGCAGCTGCAAAAGTTAAATATTCTGATCCTAGCTGGCTGCAAATTCACTGGCAATATTCCAGATGAATTGGGAAATCTTGGAGAGCTAACCTTCTTGGCTCTGAATACAAACAATTTGACTGGTAAAATACCTGCTTCTTTGGGTAAACTCTCCCAACTCTACTGGCTGGACCTTGCGGAAAATCAGTTGACTGGACCTATCCCAGTTTCATCCATGACATCCCCAGGCTTGGACCAACTAGTGAAAGCTAAACATTTCCATTTCAACAAGAACCAGCTTTCAGGTTCAATTCCAGCCACACTATTCAGCGCTAAGATGGCCCTGATACATGTGTTGTTTGATGGAAACAAATTAAGTGGGACTATTCCATCAACAATAGGACAAGTTCAGACTCTTGAGGCTCTTCGGCTTGATAGAAATGCTCTGACGGGACCAGTCCCAAAAAGTATTAACAACCTTACAAATGTCAATGAATTAAATTTGGCCCTTAACAATTTGACAGGCCCTCTGCCCGACTTGACTGGAATGAACTCCCTCAATTATGTAGACCTTAGTAACAACTCATTTGACCCATCAGAAGCACCAAGTTGGTTCTCAGCTTTACCCGTACTCACCACTCTGGTTATAGAATATGGACCACTTCAAGGTACTGTGCCAGAGAAGCTTTTCAGCCTACAAGATCTACAGCAAGTGAAACTGAAAAATAATGCATTTAACGACACACTGAACTTGGGTGATAGCATCGGTGCACAATTAGATGTTGTTGATCTGCAGAACAATGATATTTCCCAAGTCACTATAGGTTATGAGTACAAAAATTCATTAATACTTGTAGGGAACCCTGTGTGCAACACAACCACTGGTCTCTCTTATTGTCAGATTCCGCAAACTACAGTATATTCTACTACCGTTAGTTGTGGAAACGCTAAATGCCCGGAGGATCAGAAGCTCAGCCCTCAGAGTTGTCAGTGTGCATATCCGTTTGAAGGAACACTGTACTTTAGAGCACCCACTTTCAGGGATTTATCAGATGCAAATAAGTTTCACTCCCTAGAAATGAGCCTGTGGTCGAAACTTGGCCTCAATCCTGGTTCAGTTGCTCTTGAGAACCCTTTCTTCAACATTGATGACTATCTTCAAATACAGTTGGCACTCTTTCCATCTATGGGAACCTATTTTAATCGGTCAGAGATTCTGAGGATTGGTTTTGATCTGAGCAATCAAACTTACAAGCCGCCCGATGAGTTTGGTCCCTATATTTTTATTCCAGCTCCTTATACTTTCCGGGCCGCACATAAGAAATCTGTAAGCACTGGTGTTGTCATTGGGATAGCAATTGGTTGTACCTTTCTGGTTTTGGGCTTGGTGGGAGTCGGAATATATGCCATTCGGCAAAAGAGACGTGCAGAAAGAGCCATTGGATTAAGCAGACCATTTGCTTCTTGGGCACCCAGCGGAAAAGATAGTGGGGGTGCACCACAGTTAAAGGGAGCAAGATGGTTTTCTTATGAGGAGCTTAAGAAGTGCACCAATAATTTCTCTGACAATAATGAGATAGGATCCGGCGGCTACGGCAAGGTTTACAGGGGCATGTTTGCTGATGGACTAGTTGTGGCAATCAAAAGAGCTCAGCAAGGATCAATGCAGGGTGGTCTTGAGTTCAAGACTGAAATTGAATTGCTCTCACGAGTTCATCACAAAAATCTTGTCGGTCTTGTCGGGTTTTGTTTTGAACAAGGAGAACAGATGCTGGTTTACGAATATATGCCTAATGGAACACTTAGGGAAAGCTTGTCAGGGAGATCTGGCATTCATCTCGACTGGAAGAGAAGACTCCGCATCACTCTTGGCTCAGCAAGAGGACTAGCATACCTACATGAGCTTGCAAACCCTCCTATAATCCATAGAGATATTAAGACCACCAATATTCTATTGGATGAACATTTAACGGCAAAGGTTGCAGATTTTGGCTTGTCCAAGCTGGTTTCTGACAGTGGAAAAGGGCATGTTTCAACTCAGGTCAAAGGCACACTGGGATATCTGGATCCTGAATACTACATGACTCAACAGTTAACTGAGAAGAGCGATGTATACAGTTTCGGAGTGGTTATGCTTGAATTGATAACTGCAAAGCAACCGATTGAGAAGGGAAAATACATTGTCCGCGAGGTACGCATGGTAATGAACAAGGATGATGAAGAGTACTATGGGTTGAGGGAGTTAATAGATCGAAACATTAGAAACTCAGGACCTCTTATAGGGTTTGCGAGGTTCTTGGAGTTGGCCATGCAATGCGTTGAAGAATCAGCTGCAGATCGTCCAACAATGAGTGATCTTGTCAAGGCTGTTGAAACCATTCTACAAAATGATGGGATGAATACAAACTCAACATCAGCCTCTTCATCTGCCACCGACTTTAATTCTTCAAAAAGTGCTCCTAAACATCCATACAACGACGGTTTGCCAAAGAAGGATGTGACTGACACTAATAGCGCCTTTGAATACAGTGGCGGATACACCGTTTCTGCGAAAGTAGAACCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

954

Amino Acids

104.26

Weight (kDa)

5.91

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	25 - 57	9.8e-06	Leucine rich repeat N-terminal domain
Pkinase	PF00069	620 - 887	1.1e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	622 - 887	9.8e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07670 AT1G07670 AT1G07810
fragaria_vesca	FvH4_3g34570 FvH4_3g34570 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760
malus_domestica	MD04G1038900.v1.1 MD04G1116400.v1.1 MD11G1117700.v1.1 MD12G1132100.v1.1 MD13G1142700.v1.1
prunus_persica	Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1
pyrus_communis	pycom03g12390 pycom03g12400 pycom04g10640 pycom07g10780 pycom11g09870 pycom12g12810 pycom16g18850
rosa_chinensis	RchiOBHm_Chr3g0467981 RchiOBHm_Chr5g0062231
rosa_laevigata	RLG00000024462 RLG00000035545
rosa_multiflora	Rmu_co8021382.1_g000001 Rmu_sc0001793.1_g000060 Rmu_ssc0000409.1_g000035
rosa_roxburghii	Rroxscaffold_1G00018460 Rroxscaffold_6G00413240
rosa_rugosa	Rorug03G0090700 Rorug03G0090800 Rorug05G0347300
rosa_samantha	Rh3AG139600 Rh3BG161100 Rh3CG161000 Rh3DG161500 Rh5AG407900 Rh5BG421600 Rh5CG445600 Rh5DG436600
rosa_wichuraiana	Rw3G013200 Rw5G038440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	173
AasI	GACNNNNNNGTC	1 cut(s)	294
Acc36I	ACCTGC	2 cut(s)	173, 457
AccB1I	GGYRCC	1 cut(s)	1765
AccI	GTMKAC	2 cut(s)	864, 2409
AccII	CGCG	1 cut(s)	2484
AciI	CCGC	9 cut(s)	494, 1202, 1553, 1608, 1773, 1884, 2155, 2482, 2829
AcoI	YGGCCR	1 cut(s)	2601
AcsI	RAATTY	3 cut(s)	359, 796, 1135
AfaI	GTAC	7 cut(s)	927, 967, 1130, 1316, 1663, 2490, 2522
AfeI	AGCGCT	1 cut(s)	628
AfiI	CCNNNNNNNGG	8 cut(s)	220, 314, 547, 962, 1304, 1335, 1484, 2576
AflII	CTTAAG	1 cut(s)	1835
AflIII	ACRYGT	1 cut(s)	646
AgeI	ACCGGT	1 cut(s)	129
AhlI	ACTAGT	2 cut(s)	556, 1924
AjiI	CACGTC	1 cut(s)	1721
AjnI	CCWGG	4 cut(s)	213, 283, 541, 1405
AjuI	GAANNNNNNNTTGG	2 cut(s)	1719, 1751
Alw21I	GWGCWC	7 cut(s)	41, 1069, 1327, 1795, 1847, 1948, 2755
Alw26I	GTCTC	2 cut(s)	1187, 1711
Alw44I	GTGCAC	3 cut(s)	1065, 1791, 1843
AlwNI	CAGNNNCTG	2 cut(s)	77, 2068
Aor51HI	AGCGCT	1 cut(s)	628
AoxI	GGCC	8 cut(s)	96, 211, 636, 801, 820, 1396, 1605, 2601
ApaLI	GTGCAC	3 cut(s)	1065, 1791, 1843
ApeKI	GCWGC	7 cut(s)	19, 71, 74, 319, 322, 354, 2627
ApoI	RAATTY	3 cut(s)	359, 796, 1135
ArsI	GACNNNNNNTTYG	2 cut(s)	2010, 2042
AseI	ATTAAT	1 cut(s)	1142
AsiGI	ACCGGT	1 cut(s)	129
Asp700I	GAANNNNTTC	3 cut(s)	983, 1430, 2673
AspLEI	GCGC	2 cut(s)	629, 2813
AsuC2I	CCSGG	2 cut(s)	1253, 1604
AsuHPI	GGTGA	3 cut(s)	154, 922, 1064
BaeGI	GKGCMC	4 cut(s)	1069, 1768, 1795, 1847
BaeI	ACNNNNGTAYC	2 cut(s)	635, 668
BalI	TGGCCA	1 cut(s)	2603
BamHI	GGATCC	3 cut(s)	176, 1877, 2362
BanI	GGYRCC	1 cut(s)	1765
BanII	GRGCYC	1 cut(s)	1948
BarI	GAAGNNNNNNTAC	2 cut(s)	2456, 2488
BauI	CACGAG	1 cut(s)	2004
BbsI	GAAGAC	1 cut(s)	2155
Bbv12I	GWGCWC	7 cut(s)	41, 1069, 1327, 1795, 1847, 1948, 2755
BbvI	GCAGC	7 cut(s)	6, 61, 83, 309, 331, 341, 2614
BccI	CCATC	8 cut(s)	628, 653, 694, 898, 1486, 1809, 1913, 2681
BceAI	ACGGC	3 cut(s)	83, 1906, 2283
BcgI	CGANNNNNNTGC	2 cut(s)	2116, 2150
BciT130I	CCWGG	4 cut(s)	215, 285, 543, 1407
BciVI	GTATCC	1 cut(s)	2825
BcnI	CCSGG	2 cut(s)	1253, 1604
BcoDI	GTCTC	2 cut(s)	1187, 1711
BcuI	ACTAGT	2 cut(s)	556, 1924
BfaI	CTAG	5 cut(s)	347, 557, 1370, 1925, 2183
BfmI	CTRYAG	5 cut(s)	1001, 1088, 1116, 1209, 2628
BfoI	RGCGCY	2 cut(s)	630, 2814
BfrI	CTTAAG	1 cut(s)	1835
BfuAI	ACCTGC	2 cut(s)	173, 457
BfuI	GTATCC	1 cut(s)	2825
BglII	AGATCT	2 cut(s)	997, 2120
BlpI	GCTNAGC	3 cut(s)	1268, 1947, 2170
BmcAI	AGTACT	1 cut(s)	2522
Bme1390I	CCNGG	6 cut(s)	215, 285, 543, 1253, 1407, 1604
BmgBI	CACGTC	1 cut(s)	1721
BmiI	GGNNCC	9 cut(s)	128, 178, 750, 1157, 1489, 1570, 1767, 1879, 2364
BmrFI	CCNGG	6 cut(s)	215, 285, 543, 1253, 1407, 1604
BmrI	ACTGGG	2 cut(s)	515, 2360
BmsI	GCATC	4 cut(s)	1068, 1339, 2055, 2166
BmuI	ACTGGG	2 cut(s)	515, 2360
BpiI	GAAGAC	1 cut(s)	2155
Bpu1102I	GCTNAGC	3 cut(s)	1268, 1947, 2170
BpuEI	CTTGAG	3 cut(s)	734, 1442, 1994
BpuMI	CCSGG	2 cut(s)	1253, 1604
BsaBI	GATNNNNATC	1 cut(s)	1449
BsaI	GGTCTC	1 cut(s)	1187
BsaJI	CCNNGG	3 cut(s)	264, 283, 541
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	8 cut(s)	220, 314, 547, 962, 1304, 1335, 1484, 2576
Bse118I	RCCGGY	1 cut(s)	129
Bse3DI	GCAATG	2 cut(s)	198, 2615
Bse8I	GATNNNNATC	1 cut(s)	1449
BseBI	CCWGG	4 cut(s)	215, 285, 543, 1407
BseDI	CCNNGG	3 cut(s)	264, 283, 541
BseGI	GGATG	8 cut(s)	260, 527, 536, 2260, 2515, 2697, 2761, 2797
BseJI	GATNNNNATC	1 cut(s)	1449
BseLI	CCNNNNNNNGG	8 cut(s)	220, 314, 547, 962, 1304, 1335, 1484, 2576
BseMI	GCAATG	2 cut(s)	198, 2615
BseRI	GAGGAG	1 cut(s)	1844
BseSI	GKGCMC	4 cut(s)	1069, 1768, 1795, 1847
BseXI	GCAGC	7 cut(s)	6, 61, 83, 309, 331, 341, 2614
BseYI	CCCAGC	4 cut(s)	77, 119, 123, 1769
BsgI	GTGCAG	1 cut(s)	1743
Bsh1236I	CGCG	1 cut(s)	2484
BshFI	GGCC	8 cut(s)	98, 213, 638, 803, 822, 1398, 1607, 2603
BshNI	GGYRCC	1 cut(s)	1765
BshTI	ACCGGT	1 cut(s)	129
BsiHKAI	GWGCWC	7 cut(s)	41, 1069, 1327, 1795, 1847, 1948, 2755
BsiSI	CCGG	4 cut(s)	130, 1253, 1603, 1881
BslFI	GGGAC	5 cut(s)	140, 691, 740, 762, 1554
BslI	CCNNNNNNNGG	8 cut(s)	220, 314, 547, 962, 1304, 1335, 1484, 2576
BsmAI	GTCTC	2 cut(s)	1187, 1711
BsmBI	CGTCTC	1 cut(s)	1711
BsmFI	GGGAC	5 cut(s)	140, 691, 740, 762, 1554
BsmI	GAATGC	1 cut(s)	2127
BsnI	GGCC	8 cut(s)	98, 213, 638, 803, 822, 1398, 1607, 2603
Bso31I	GGTCTC	1 cut(s)	1187
Bsp1286I	GDGCHC	8 cut(s)	41, 1069, 1327, 1768, 1795, 1847, 1948, 2755
Bsp1720I	GCTNAGC	3 cut(s)	1268, 1947, 2170
BspACI	CCGC	9 cut(s)	494, 1202, 1553, 1608, 1773, 1884, 2155, 2482, 2829
BspANI	GGCC	8 cut(s)	98, 213, 638, 803, 822, 1398, 1607, 2603
BspFNI	CGCG	1 cut(s)	2484
BspLI	GGNNCC	9 cut(s)	128, 178, 750, 1157, 1489, 1570, 1767, 1879, 2364
BspMAI	CTGCAG	2 cut(s)	1092, 2632
BspMI	ACCTGC	2 cut(s)	173, 457
BspQI	GCTCTTC	2 cut(s)	726, 2393
BspT107I	GGYRCC	1 cut(s)	1765
BspTI	CTTAAG	1 cut(s)	1835
BspTNI	GGTCTC	1 cut(s)	1187
BsrDI	GCAATG	2 cut(s)	198, 2615
BsrFI	RCCGGY	1 cut(s)	129
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	3 cut(s)	264, 283, 541
BssNAI	GTATAC	1 cut(s)	2410
BssSI	CACGAG	1 cut(s)	2004
BssT1I	CCWWGG	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	2410
Bst2BI	CACGAG	1 cut(s)	2004
Bst2UI	CCWGG	4 cut(s)	215, 285, 543, 1407
Bst6I	CTCTTC	5 cut(s)	726, 2138, 2393, 2511, 2722
BstAFI	CTTAAG	1 cut(s)	1835
BstAPI	GCANNNNNTGC	1 cut(s)	2276
BstC8I	GCNNGC	2 cut(s)	352, 2202
BstENI	CCTNNNNNAGG	1 cut(s)	2574
BstF5I	GGATG	8 cut(s)	260, 527, 536, 2260, 2515, 2697, 2761, 2797
BstFNI	CGCG	1 cut(s)	2484
BstH2I	RGCGCY	2 cut(s)	630, 2814
BstHHI	GCGC	2 cut(s)	629, 2813
BstMAI	GTCTC	2 cut(s)	1187, 1711
BstMWI	GCNNNNNNNGC	7 cut(s)	635, 979, 1730, 1763, 1890, 2276, 2490
BstNI	CCWGG	4 cut(s)	215, 285, 543, 1407
BstNSI	RCATGY	3 cut(s)	650, 1912, 2327
BstSCI	CCNGG	6 cut(s)	213, 283, 541, 1251, 1405, 1602
BstSFI	CTRYAG	5 cut(s)	1001, 1088, 1116, 1209, 2628
BstSLI	GKGCMC	4 cut(s)	1069, 1768, 1795, 1847
BstUI	CGCG	1 cut(s)	2484
BstV1I	GCAGC	7 cut(s)	6, 61, 83, 309, 331, 341, 2614
BstV2I	GAAGAC	1 cut(s)	2155
BstX2I	RGATCY	6 cut(s)	176, 223, 997, 1877, 2120, 2362
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	6 cut(s)	176, 223, 997, 1877, 2120, 2362
BstZ17I	GTATAC	1 cut(s)	2410
BsuI	GTATCC	1 cut(s)	2825
BsuRI	GGCC	8 cut(s)	98, 213, 638, 803, 822, 1398, 1607, 2603
BtgZI	GCGATG	1 cut(s)	2418
BtrI	CACGTC	1 cut(s)	1721
BtsCI	GGATG	8 cut(s)	260, 527, 536, 2260, 2515, 2697, 2761, 2797
BveI	ACCTGC	2 cut(s)	173, 457
Cac8I	GCNNGC	2 cut(s)	352, 2202
CaiI	CAGNNNCTG	2 cut(s)	77, 2068
CfoI	GCGC	2 cut(s)	629, 2813
Cfr10I	RCCGGY	1 cut(s)	129
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	7 cut(s)	926, 966, 1129, 1315, 1662, 2489, 2521
CspAI	ACCGGT	1 cut(s)	129
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviQI	GTAC	7 cut(s)	926, 966, 1129, 1315, 1662, 2489, 2521
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	2601
Eam1104I	CTCTTC	5 cut(s)	726, 2138, 2393, 2511, 2722
EarI	CTCTTC	5 cut(s)	726, 2138, 2393, 2511, 2722
EciI	GGCGGA	1 cut(s)	2844
Ecl136II	GAGCTC	1 cut(s)	1946
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	1948
Eco31I	GGTCTC	1 cut(s)	1187
Eco32I	GATATC	1 cut(s)	2357
Eco47III	AGCGCT	1 cut(s)	628
Eco53kI	GAGCTC	1 cut(s)	1946
EcoICRI	GAGCTC	1 cut(s)	1946
EcoNI	CCTNNNNNAGG	1 cut(s)	2574
EcoO109I	RGGNCCY	2 cut(s)	821, 2567
EcoRII	CCWGG	4 cut(s)	213, 283, 541, 1405
EcoRV	GATATC	1 cut(s)	2357
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	1030
EcoT38I	GRGCYC	1 cut(s)	1948
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	1711
FaqI	GGGAC	5 cut(s)	140, 691, 740, 762, 1554
FblI	GTMKAC	2 cut(s)	864, 2409
FokI	GGATG	8 cut(s)	247, 514, 523, 2267, 2522, 2704, 2748, 2804
FriOI	GRGCYC	1 cut(s)	1948
FspBI	CTAG	5 cut(s)	347, 557, 1370, 1925, 2183
GlaI	GCGC	2 cut(s)	628, 2812
GsaI	CCCAGC	4 cut(s)	81, 123, 127, 1773
HaeII	RGCGCY	2 cut(s)	630, 2814
HaeIII	GGCC	8 cut(s)	98, 213, 638, 803, 822, 1398, 1607, 2603
HapII	CCGG	4 cut(s)	130, 1253, 1603, 1881
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	2 cut(s)	629, 2813
Hin6I	GCGC	2 cut(s)	627, 2811
HinP1I	GCGC	2 cut(s)	627, 2811
HincII	GTYRAC	2 cut(s)	507, 2391
HindII	GTYRAC	2 cut(s)	507, 2391
HindIII	AAGCTT	2 cut(s)	980, 2107
HinfI	GANTC	9 cut(s)	46, 159, 709, 1198, 1510, 1689, 2151, 2380, 2621
HpaI	GTTAAC	1 cut(s)	2391
HpaII	CCGG	4 cut(s)	130, 1253, 1603, 1881
HphI	GGTGA	3 cut(s)	154, 922, 1064
Hpy99I	CGWCG	1 cut(s)	2777
HpyAV	CCTTC	5 cut(s)	149, 418, 1298, 2458, 2782
HpyCH4IV	ACGT	1 cut(s)	1720
HpyF10VI	GCNNNNNNNGC	7 cut(s)	635, 979, 1730, 1763, 1890, 2276, 2490
HpySE526I	ACGT	1 cut(s)	1720
HspAI	GCGC	2 cut(s)	627, 2811
KspAI	GTTAAC	1 cut(s)	2391
LguI	GCTCTTC	2 cut(s)	726, 2393
LmnI	GCTCC	4 cut(s)	1594, 1808, 1831, 2758
Lsp1109I	GCAGC	7 cut(s)	6, 61, 83, 309, 331, 341, 2614
LweI	GCATC	4 cut(s)	1068, 1339, 2055, 2166
MaeI	CTAG	5 cut(s)	347, 557, 1370, 1925, 2183
MaeII	ACGT	1 cut(s)	1720
MaeIII	GTNAC	4 cut(s)	184, 872, 1111, 2794
MfeI	CAATTG	1 cut(s)	1653
MflI	RGATCY	6 cut(s)	176, 223, 997, 1877, 2120, 2362
MhlI	GDGCHC	8 cut(s)	41, 1069, 1327, 1768, 1795, 1847, 1948, 2755
MlsI	TGGCCA	1 cut(s)	2603
MluNI	TGGCCA	1 cut(s)	2603
MlyI	GAGTC	4 cut(s)	703, 1698, 2145, 2374
MmeI	TCCRAC	2 cut(s)	1672, 2663
Mox20I	TGGCCA	1 cut(s)	2603
Mph1103I	ATGCAT	1 cut(s)	1030
MroXI	GAANNNNTTC	3 cut(s)	983, 1430, 2673
MscI	TGGCCA	1 cut(s)	2603
MslI	CAYNNNNRTG	1 cut(s)	2498
Msp20I	TGGCCA	1 cut(s)	2603
MspA1I	CMGCKG	5 cut(s)	74, 123, 322, 1773, 2627
MspCI	CTTAAG	1 cut(s)	1835
MspI	CCGG	4 cut(s)	130, 1253, 1603, 1881
MspR9I	CCNGG	6 cut(s)	215, 285, 543, 1253, 1407, 1604
MunI	CAATTG	1 cut(s)	1653
Mva1269I	GAATGC	1 cut(s)	2127
MvaI	CCWGG	4 cut(s)	215, 285, 543, 1407
MvnI	CGCG	1 cut(s)	2484
MwoI	GCNNNNNNNGC	7 cut(s)	635, 979, 1730, 1763, 1890, 2276, 2490
NciI	CCSGG	2 cut(s)	1253, 1604
NlaIV	GGNNCC	9 cut(s)	128, 178, 750, 1157, 1489, 1570, 1767, 1879, 2364
NmuCI	GTSAC	3 cut(s)	184, 1111, 2794
NsiI	ATGCAT	1 cut(s)	1030
NspI	RCATGY	3 cut(s)	650, 1912, 2327
PaqCI	CACCTGC	1 cut(s)	173
PciI	ACATGT	1 cut(s)	646
PciSI	GCTCTTC	2 cut(s)	726, 2393
PctI	GAATGC	1 cut(s)	2127
PdmI	GAANNNNTTC	3 cut(s)	983, 1430, 2673
PfeI	GAWTC	5 cut(s)	46, 159, 1198, 1510, 2621
PinAI	ACCGGT	1 cut(s)	129
PleI	GAGTC	4 cut(s)	703, 1697, 2145, 2374
PpsI	GAGTC	4 cut(s)	703, 1697, 2145, 2374
PpuMI	RGGWCCY	1 cut(s)	2567
PscI	ACATGT	1 cut(s)	646
PshBI	ATTAAT	1 cut(s)	1142
Psp124BI	GAGCTC	1 cut(s)	1948
Psp5II	RGGWCCY	1 cut(s)	2567
Psp6I	CCWGG	4 cut(s)	213, 283, 541, 1405
PspFI	CCCAGC	4 cut(s)	77, 119, 123, 1769
PspGI	CCWGG	4 cut(s)	213, 283, 541, 1405
PspN4I	GGNNCC	9 cut(s)	128, 178, 750, 1157, 1489, 1570, 1767, 1879, 2364
PspPPI	RGGWCCY	1 cut(s)	2567
PstI	CTGCAG	2 cut(s)	1092, 2632
PstNI	CAGNNNCTG	2 cut(s)	77, 2068
PsuI	RGATCY	6 cut(s)	176, 223, 997, 1877, 2120, 2362
PvuII	CAGCTG	4 cut(s)	74, 123, 322, 2627
RsaI	GTAC	7 cut(s)	927, 967, 1130, 1316, 1663, 2490, 2522
RsaNI	GTAC	7 cut(s)	926, 966, 1129, 1315, 1662, 2489, 2521
RseI	CAYNNNNRTG	1 cut(s)	2498
SacI	GAGCTC	1 cut(s)	1948
SapI	GCTCTTC	2 cut(s)	726, 2393
ScaI	AGTACT	1 cut(s)	2522
SchI	GAGTC	4 cut(s)	703, 1698, 2145, 2374
ScrFI	CCNGG	6 cut(s)	215, 285, 543, 1253, 1407, 1604
SduI	GDGCHC	8 cut(s)	41, 1069, 1327, 1768, 1795, 1847, 1948, 2755
SfaNI	GCATC	4 cut(s)	1068, 1339, 2055, 2166
SfcI	CTRYAG	5 cut(s)	1001, 1088, 1116, 1209, 2628
SmiMI	CAYNNNNRTG	1 cut(s)	2498
SmlI	CTYRAG	4 cut(s)	713, 1421, 1835, 1973
SmoI	CTYRAG	4 cut(s)	713, 1421, 1835, 1973
SpeI	ACTAGT	2 cut(s)	556, 1924
SsiI	CCGC	9 cut(s)	494, 1202, 1553, 1608, 1773, 1884, 2155, 2482, 2829
SspI	AATATT	3 cut(s)	337, 373, 2245
SspMI	CTAG	5 cut(s)	347, 557, 1370, 1925, 2183
SstI	GAGCTC	1 cut(s)	1948
StyD4I	CCNGG	6 cut(s)	213, 283, 541, 1251, 1405, 1602
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	1 cut(s)	1723
TaqI	TCGA	3 cut(s)	1388, 2136, 2548
TaqII	GACCGA	2 cut(s)	1491, 2018
TatI	WGTACW	3 cut(s)	1128, 1314, 2520
TauI	GCSGC	3 cut(s)	1555, 1610, 1887
TfiI	GAWTC	5 cut(s)	46, 159, 1198, 1510, 2621
TseFI	GTSAC	3 cut(s)	184, 1111, 2794
TseI	GCWGC	7 cut(s)	19, 71, 74, 319, 322, 354, 2627
Tsp45I	GTSAC	3 cut(s)	184, 1111, 2794
TspGWI	ACGGA	1 cut(s)	1287
Vha464I	CTTAAG	1 cut(s)	1835
VneI	GTGCAC	3 cut(s)	1065, 1791, 1843
VspI	ATTAAT	1 cut(s)	1142
XagI	CCTNNNNNAGG	1 cut(s)	2574
XapI	RAATTY	3 cut(s)	359, 796, 1135
XceI	RCATGY	3 cut(s)	650, 1912, 2327
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1758, 2248
XmiI	GTMKAC	2 cut(s)	864, 2409
XmnI	GAANNNNTTC	3 cut(s)	983, 1430, 2673
XspI	CTAG	5 cut(s)	347, 557, 1370, 1925, 2183
ZrmI	AGTACT	1 cut(s)	2522
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.