Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001873

Physical Location & Seq

Genomic Coordinates Forward (+)

13120229 .. 13126203

Gene Structure 5975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3192 bp

ATGGGGAAAGGAGGTGAGGATTTCGGCAAGCGAGAGAAGGCGGCGGGGCCTACGACGTCGTCCGATCGCGATGCGTTTCCGGCGTGGAGTAAGGAGATTCATGAGTGCGAGAAGCACTTCTGCGTGAGCCGGAAGTTAGGGCTGACGTCGGCGGAGGTGGCGGAGCGGCGGGAGGAGTACGGGTGGAACGAGTTGGAGAAGCACGAGGGGCAGTCGATTTGGAGTCTGGTGCTCGACCAGTTCAACGATACTCTGGTGCGGATCCTGCTCGTCGCGGCGGTCGTCTCGTTTGTGCTGGCGTGGTTGGACGGGGAGGAAGGCGGTGAGAAGGAGATCACGGCGTTTGTGGAGCCGTTGGTGATCTTTTTGATTCTGATTGTGAACGCGATTGTTGGGGTTTGGCAGGAGAGCAATGCCGAGAAGGCGCTGGAGGCGCTTAAGGAGATTCAGTCGGAGCACGCGACTGTGATTCGGAATGGGAGTAAGGTTCCGAATTTGCCGGCGAAGGAGCTTGTTCCCGGAGATATTGTGGAGCTTAAGGTTGGGGATAAGGTTCCGGCTGATATGCGTGTAGTGCAGTTGATTAGCTCGACCTTGAGGGTTGAGCAGGGTTCGTTGACTGGAGAGAGTGAGGCTGTGAATAAGACTAACAAGCCGGTTCCGGAGGATGCTGATATTCAGGGGAAGTCGTCTATGGTGTTTGCCGGGACGACTATTGTGAATGGGAATTGCATTTGCTTGGTTGCCCAGACCGGAATGACCACCGAGATTGGGAAGGTGCATATGCAAATTCATGTGGCTTCACAGAGTGAGGAAGACACTCCGTTGAAGAAGAAACTTAATGAGTTTGGGGAGATGCTCACTATGATAATTGGAGTGATTTGTGCGTTGGTGTGGCTCATCAATGTCAAGTACTTCCTCACTTGGGAATATGTTGATGGGATGCCGAGGAATTTCAAGTTTTCATTTGAGAAGTGCACTTATTACTTCGAGATTGCAGTGGCACTGGCTGTGGCTGCTATTCCTGAAGGTTTGCCAGCAGTCATCACTACCTGCTTGGCACTTGGTACCCGCAAAATGGCACAGAAGAATGCCTTGGTTAGAAAGCTTCCCAGTGTTGAAACTCTGGGTTGTACCACAGTCATTTGTTCTGACAAAACAGGGACCTTGACTACGAACCAAATGGCAGTTTCCAGGCTTGTAGCTTTGGGTCCTAGTCCAACTATAATACGGAAGTTTAAGGTGGATGGGACTACTTACAATCCAGCAGATGGAAAAATTTATGACTGGCCAAGTGGACGTATGGATACTAATCTTCAAACGATTGCAAAGGTAGCTGCTGTCTGTAATGATGCTGGTATTACCCAATCAGAACACAAGTATGTTGCCCATGGAATGCCTACCGAGGCAGCTCTTAAGGTTTTAGTTGAGAAGATGGGGCTTCCTGAAGCATCTCGAGGTGTGGGATCAAGTAAAACTGATTTACTAGGTTGTTGCAAGCACTGGAATGAATCTGAGCGCCGAGTTGCAACTCTTGAGTTTGATCGTGATAGGAAATCTATGGGTGTAATTGCCACCTCCCGTTCGGGGAAAAATTCTTTGCTGGTGAAGGGTGCTGTAGAAAATGTGTTGGAGAGAAGCACTCAGGTTCAGTTGCTTGATGGAACTGTTGTACCACTAGACAACAACTCAAGGAACTACATCTTACAAGCTCTTAATGAGATGTCATCTGATGCACTACGTTGTCTGGGTTTTGCATATAAAGATGACTTGGCTGACTTTGAGTCCTACGATGGTGATGAGCATCCAGCTCACAAGATATTACTTGATCCATCCAATTATTCATCAATAGAGAGCGAACTTGTTTTTGTTGGCTTGGTTGGACTGAGGGATCCACCAAGAGAGGAGGTTTTTGATGCAATTGAAGATTGCCGTGCAGCAGGAATTCGTGTTATGGTAATTACTGGAGATAACAAGAACACCGCAGAAGCTATATGTCGTGAAATAGGTGTTTTTGGTACTCATGAAGACATAAGTACAAGAAGCATAACAGGAAGAGAGTTTATGAATCTGCCTGATCAGAAAGCCTTTCTGAGACAAGGTGGTGGGCTGCTCTTTTCAAGGGCTGAACCAAGGCACAAACAAGAGATTGTGAGGTTGCTGAAAGATGAAGGTGAGGTGGTTGCCATGACTGGTGATGGAGTAAATGATGCACCTGCATTGAAACTTGCTGATATTGGAATTGCAATGGGCATTGCTGGAACCGAGGTTGCAAAGGAAGCTTCCGACATGGTTTTGGCAGATGATAATTTCAGCACAATTGTTGCTGCTGTTGGTGAGGGCAGATCCATCTACAACAACATGAAGGCCTTTATCAGGTACATGATCTCCTCCAATATTGGTGAGGTTGCATCTATATTCCTTACAGCAGCATTGGGCATTCCTGAAGGGCTCATCCCTGTCCAGCTTTTGTGGGTCAATCTTGTCACTGATGGGCCACCTGCAACAGCATTAGGATTTAATCCTCCGGACCAGGACATAATGAAGAAACCCCCACGCAGAAGTGATGATTCACTGATCAGCGCGTGGATATTGTTCCGATATTTGGTAATTGGGTTGTATGTTGGAGTAGCAACAGTCGGCGTATTCATAATTTGGTATACTCATAGTTCCTTCATGGGTATCGACCTCAGTGGGGATGGCCACTCCCTTGTTACTTACTCCCAACTTGCCAACTGGGGACAGTGCTCAACTTGGCAGAACTTTACTGCTTCACCTTTCACAGCTGGAAATGAGGTTATCTCGTTTGACAAAAACCCATGCGATTATTTCCATGGCGGCAAAGTTAAGGCTATGACCCTCTCCCTCTCTGTGTTGGTTGCCATCGAAATGTTCAACTCGCTCAATGCCCTTTCTGAGGATGGAAGCCTGTTGTCAATGCCTCCATGGGTCAACCCTTGGCTCCTTGTGGCCATGTCTGTTTCATTTGGCCTTCATTTCTTGATCCTGTATGTGCCTTTCCTAGCTCAAATATTCGGCATTGTACCCCTGAGTCTAAACGAATGGCTGTTGGTTTTGGCCGTTTCATTGCCGGTGATTCTCATTGATGAGATCCTCAAGTTAGTCGGCAGACGGACAAGCAAGTCTCATGTATCCAGGAGGAGAAAACCATCAAAGCCCAAGGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

1063

Amino Acids

116.16

Weight (kDa)

5.37

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	29 - 96	4.7e-20	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	149 - 261	6.2e-24	P-type ATPase actuator domain
Cation_ATPase	PF13246	439 - 636	4e-42	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	624 - 745	3.7e-15	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	817 - 1042	1.3e-49	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07670 AT1G07670 AT1G07810
fragaria_vesca	FvH4_3g34570 FvH4_3g34570 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760
malus_domestica	MD04G1038900.v1.1 MD04G1116400.v1.1 MD11G1117700.v1.1 MD12G1132100.v1.1 MD13G1142700.v1.1
prunus_persica	Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1
pyrus_communis	pycom03g12390 pycom03g12400 pycom04g10640 pycom07g10780 pycom11g09870 pycom12g12810 pycom16g18850
rosa_chinensis	RchiOBHm_Chr3g0467981 RchiOBHm_Chr5g0062231
rosa_laevigata	RLG00000024462 RLG00000035545
rosa_multiflora	Rmu_co8021382.1_g000001 Rmu_sc0001793.1_g000060 Rmu_ssc0000409.1_g000035
rosa_roxburghii	Rroxscaffold_1G00018460 Rroxscaffold_6G00413240
rosa_rugosa	Rorug03G0090700 Rorug03G0090800 Rorug05G0347300
rosa_samantha	Rh3AG139600 Rh3BG161100 Rh3CG161000 Rh3DG161500 Rh5AG407900 Rh5BG421600 Rh5CG445600 Rh5DG436600
rosa_wichuraiana	Rw3G013200 Rw5G038440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2224, 2509
AasI	GACNNNNNNGTC	1 cut(s)	3142
AatII	GACGTC	2 cut(s)	59, 149
Acc36I	ACCTGC	3 cut(s)	1061, 2224, 2509
Acc65I	GGTACC	1 cut(s)	1067
AccB1I	GGYRCC	1 cut(s)	1067
AccB7I	CCANNNNNTGG	1 cut(s)	1271
AccBSI	CCGCTC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	2660
AccII	CGCG	5 cut(s)	69, 275, 386, 461, 2585
AccIII	TCCGGA	2 cut(s)	661, 2527
AclWI	GGATC	9 cut(s)	256, 269, 1474, 1823, 1886, 1899, 2340, 2998, 3106
AcoI	YGGCCR	4 cut(s)	1289, 2701, 2970, 3078
AcsI	RAATTY	6 cut(s)	493, 789, 952, 1278, 1594, 1944
AcuI	CTGAAG	3 cut(s)	1047, 1467, 2466
AcyI	GRCGYC	2 cut(s)	56, 146
AdeI	CACNNNGTG	1 cut(s)	809
AfaI	GTAC	9 cut(s)	179, 914, 1069, 1135, 1674, 2020, 2038, 2381, 3045
AfiI	CCNNNNNNNGG	9 cut(s)	771, 925, 1078, 1271, 1587, 2376, 2605, 2695, 2917
AflII	CTTAAG	3 cut(s)	437, 536, 1415
AgsI	TTSAA	9 cut(s)	244, 829, 958, 1121, 1319, 1925, 2121, 2224, 2896
AhdI	GACNNNNNGTC	1 cut(s)	1783
AjnI	CCWGG	3 cut(s)	1193, 2532, 3155
AjuI	GAANNNNNNNTTGG	2 cut(s)	1079, 1111
Alw21I	GWGCWC	4 cut(s)	234, 459, 980, 2750
Alw26I	GTCTC	3 cut(s)	289, 2089, 3150
Alw44I	GTGCAC	1 cut(s)	976
AlwI	GGATC	9 cut(s)	256, 269, 1474, 1823, 1886, 1899, 2340, 2998, 3106
Ama87I	CYCGRG	1 cut(s)	1455
Aor13HI	TCCGGA	2 cut(s)	661, 2527
AoxI	GGCC	8 cut(s)	47, 1289, 2367, 2495, 2701, 2970, 2989, 3078
ApaLI	GTGCAC	1 cut(s)	976
ApeKI	GCWGC	7 cut(s)	1016, 1337, 1409, 1937, 2110, 2327, 2429
ApoI	RAATTY	6 cut(s)	493, 789, 952, 1278, 1594, 1944
Asp700I	GAANNNNTTC	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	1067
AspLEI	GCGC	4 cut(s)	427, 436, 1521, 2585
AspS9I	GGNCC	5 cut(s)	47, 1164, 1211, 2495, 2530
AsuC2I	CCSGG	2 cut(s)	519, 706
AvaI	CYCGRG	1 cut(s)	1455
AvaII	GGWCC	3 cut(s)	1164, 1211, 2530
BaeGI	GKGCMC	1 cut(s)	980
BaeI	ACNNNNGTAYC	4 cut(s)	240, 273, 1656, 1689
BalI	TGGCCA	3 cut(s)	1291, 2703, 2972
BamHI	GGATCC	2 cut(s)	261, 1891
BanI	GGYRCC	1 cut(s)	1067
BanII	GRGCYC	1 cut(s)	2454
BauI	CACGAG	1 cut(s)	203
BbsI	GAAGAC	2 cut(s)	822, 2034
Bbv12I	GWGCWC	4 cut(s)	234, 459, 980, 2750
BbvI	GCAGC	7 cut(s)	1003, 1324, 1421, 1949, 2097, 2314, 2441
BceAI	ACGGC	4 cut(s)	337, 354, 1917, 3065
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	3 cut(s)	1195, 2534, 3157
BciVI	GTATCC	2 cut(s)	1300, 3163
BclI	TGATCA	2 cut(s)	2077, 2577
BcnI	CCSGG	2 cut(s)	519, 706
BcoDI	GTCTC	3 cut(s)	289, 2089, 3150
BfaI	CTAG	4 cut(s)	1215, 1487, 1679, 3023
BfmI	CTRYAG	1 cut(s)	1617
BfoI	RGCGCY	3 cut(s)	428, 437, 1522
BfrI	CTTAAG	3 cut(s)	437, 536, 1415
BfuAI	ACCTGC	3 cut(s)	1061, 2224, 2509
BfuI	GTATCC	2 cut(s)	1300, 3163
BglI	GCCNNNNNGGC	1 cut(s)	422
BmcAI	AGTACT	1 cut(s)	914
Bme1390I	CCNGG	5 cut(s)	519, 706, 1195, 2534, 3157
Bme18I	GGWCC	3 cut(s)	1164, 1211, 2530
BmeRI	GACNNNNNGTC	1 cut(s)	1783
BmeT110I	CYCGRG	1 cut(s)	1455
BmgT120I	GGNCC	5 cut(s)	47, 1164, 1211, 2495, 2530
BmrFI	CCNGG	5 cut(s)	519, 706, 1195, 2534, 3157
BmrI	ACTGGG	2 cut(s)	1107, 2746
BmuI	ACTGGG	2 cut(s)	1107, 2746
BpiI	GAAGAC	2 cut(s)	822, 2034
BplI	GAGNNNNNCTC	4 cut(s)	1627, 1659, 2786, 2818
BpmI	CTGGAG	3 cut(s)	449, 642, 1986
BpuEI	CTTGAG	4 cut(s)	616, 1556, 1675, 3101
BpuMI	CCSGG	2 cut(s)	519, 706
BsaBI	GATNNNNATC	2 cut(s)	1311, 1803
BsaHI	GRCGYC	2 cut(s)	56, 146
BsaWI	WCCGGW	3 cut(s)	661, 752, 2527
BsaXI	ACNNNNNCTCC	8 cut(s)	167, 197, 434, 464, 513, 543, 2372, 2402
Bsc4I	CCNNNNNNNGG	9 cut(s)	771, 925, 1078, 1271, 1587, 2376, 2605, 2695, 2917
Bse118I	RCCGGY	3 cut(s)	499, 655, 3091
Bse1I	ACTGG	9 cut(s)	238, 625, 1011, 1113, 1292, 1508, 1969, 2197, 2741
Bse3DI	GCAATG	4 cut(s)	418, 2253, 2253, 3086
Bse8I	GATNNNNATC	2 cut(s)	1311, 1803
BseAI	TCCGGA	2 cut(s)	661, 2527
BseBI	CCWGG	3 cut(s)	1195, 2534, 3157
BseGI	GGATG	8 cut(s)	673, 948, 1252, 1804, 1832, 2454, 2704, 2926
BseJI	GATNNNNATC	2 cut(s)	1311, 1803
BseLI	CCNNNNNNNGG	9 cut(s)	771, 925, 1078, 1271, 1587, 2376, 2605, 2695, 2917
BseMI	GCAATG	4 cut(s)	418, 2253, 2253, 3086
BseMII	CTCAG	7 cut(s)	1506, 1658, 1877, 2084, 2704, 2907, 3041
BseNI	ACTGG	9 cut(s)	238, 625, 1011, 1113, 1292, 1508, 1969, 2197, 2741
BseRI	GAGGAG	4 cut(s)	188, 1919, 2380, 3175
BseSI	GKGCMC	1 cut(s)	980
BseXI	GCAGC	7 cut(s)	1003, 1324, 1421, 1949, 2097, 2314, 2441
BsgI	GTGCAG	2 cut(s)	596, 1956
Bsh1236I	CGCG	5 cut(s)	69, 275, 386, 461, 2585
Bsh1285I	CGRYCG	2 cut(s)	67, 282
BshFI	GGCC	8 cut(s)	49, 1291, 2369, 2497, 2703, 2972, 2991, 3080
BshNI	GGYRCC	1 cut(s)	1067
BsiEI	CGRYCG	2 cut(s)	67, 282
BsiHKAI	GWGCWC	4 cut(s)	234, 459, 980, 2750
BsiHKCI	CYCGRG	1 cut(s)	1455
BslFI	GGGAC	4 cut(s)	721, 1177, 1264, 2754
BslI	CCNNNNNNNGG	9 cut(s)	771, 925, 1078, 1271, 1587, 2376, 2605, 2695, 2917
BsmAI	GTCTC	3 cut(s)	289, 2089, 3150
BsmBI	CGTCTC	1 cut(s)	289
BsmFI	GGGAC	4 cut(s)	721, 1177, 1264, 2754
BsmI	GAATGC	3 cut(s)	1096, 1401, 2439
BsnI	GGCC	8 cut(s)	49, 1291, 2369, 2497, 2703, 2972, 2991, 3080
BsoBI	CYCGRG	1 cut(s)	1455
Bsp1286I	GDGCHC	5 cut(s)	234, 459, 980, 2454, 2750
Bsp13I	TCCGGA	2 cut(s)	661, 2527
Bsp19I	CCATGG	3 cut(s)	1390, 2833, 2945
Bsp68I	TCGCGA	1 cut(s)	69
BspANI	GGCC	8 cut(s)	49, 1291, 2369, 2497, 2703, 2972, 2991, 3080
BspCNI	CTCAG	7 cut(s)	1507, 1657, 1878, 2085, 2703, 2908, 3042
BspEI	TCCGGA	2 cut(s)	661, 2527
BspFNI	CGCG	5 cut(s)	69, 275, 386, 461, 2585
BspHI	TCATGA	2 cut(s)	100, 2023
BspMI	ACCTGC	3 cut(s)	1061, 2224, 2509
BspPI	GGATC	9 cut(s)	256, 269, 1474, 1823, 1886, 1899, 2340, 2998, 3106
BspT107I	GGYRCC	1 cut(s)	1067
BspTI	CTTAAG	3 cut(s)	437, 536, 1415
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	4 cut(s)	418, 2253, 2253, 3086
BsrFI	RCCGGY	3 cut(s)	499, 655, 3091
BsrI	ACTGG	9 cut(s)	238, 625, 1011, 1113, 1292, 1508, 1969, 2197, 2741
BssAI	RCCGGY	3 cut(s)	499, 655, 3091
BssNAI	GTATAC	1 cut(s)	2661
BssNI	GRCGYC	2 cut(s)	56, 146
BssSI	CACGAG	1 cut(s)	203
BssT1I	CCWWGG	7 cut(s)	1095, 1390, 2132, 2833, 2945, 2957, 3180
Bst1107I	GTATAC	1 cut(s)	2661
Bst2BI	CACGAG	1 cut(s)	203
Bst2UI	CCWGG	3 cut(s)	1195, 2534, 3157
Bst4CI	ACNGT	5 cut(s)	466, 1141, 1669, 2638, 2745
Bst6I	CTCTTC	1 cut(s)	2050
BstACI	GRCGYC	2 cut(s)	56, 146
BstAFI	CTTAAG	3 cut(s)	437, 536, 1415
BstC8I	GCNNGC	6 cut(s)	29, 297, 459, 501, 1038, 1499
BstDEI	CTNAG	7 cut(s)	1515, 1644, 1886, 2093, 2690, 2916, 3050
BstDSI	CCRYGG	3 cut(s)	1390, 2833, 2945
BstENI	CCTNNNNNAGG	2 cut(s)	2374, 2915
BstF5I	GGATG	8 cut(s)	673, 948, 1252, 1804, 1832, 2454, 2704, 2926
BstFNI	CGCG	5 cut(s)	69, 275, 386, 461, 2585
BstH2I	RGCGCY	3 cut(s)	428, 437, 1522
BstHHI	GCGC	4 cut(s)	427, 436, 1521, 2585
BstMAI	GTCTC	3 cut(s)	289, 2089, 3150
BstMCI	CGRYCG	2 cut(s)	67, 282
BstNI	CCWGG	3 cut(s)	1195, 2534, 3157
BstSCI	CCNGG	5 cut(s)	517, 704, 1193, 2532, 3155
BstSFI	CTRYAG	1 cut(s)	1617
BstSLI	GKGCMC	1 cut(s)	980
BstUI	CGCG	5 cut(s)	69, 275, 386, 461, 2585
BstV1I	GCAGC	7 cut(s)	1003, 1324, 1421, 1949, 2097, 2314, 2441
BstV2I	GAAGAC	2 cut(s)	822, 2034
BstX2I	RGATCY	4 cut(s)	261, 1891, 2345, 3111
BstYI	RGATCY	4 cut(s)	261, 1891, 2345, 3111
BstZ17I	GTATAC	1 cut(s)	2661
BsuI	GTATCC	2 cut(s)	1300, 3163
BsuRI	GGCC	8 cut(s)	49, 1291, 2369, 2497, 2703, 2972, 2991, 3080
BtgI	CCRYGG	3 cut(s)	1390, 2833, 2945
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	8 cut(s)	673, 948, 1252, 1804, 1832, 2454, 2704, 2926
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	8 cut(s)	1004, 1005, 1120, 1501, 2487, 2573, 2698, 2750
BtuMI	TCGCGA	1 cut(s)	69
BveI	ACCTGC	3 cut(s)	1061, 2224, 2509
Cac8I	GCNNGC	6 cut(s)	29, 297, 459, 501, 1038, 1499
CciI	TCATGA	2 cut(s)	100, 2023
CfoI	GCGC	4 cut(s)	427, 436, 1521, 2585
Cfr10I	RCCGGY	3 cut(s)	499, 655, 3091
Cfr13I	GGNCC	5 cut(s)	47, 1164, 1211, 2495, 2530
Csp6I	GTAC	9 cut(s)	178, 913, 1068, 1134, 1673, 2019, 2037, 2380, 3044
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviQI	GTAC	9 cut(s)	178, 913, 1068, 1134, 1673, 2019, 2037, 2380, 3044
DdeI	CTNAG	7 cut(s)	1515, 1644, 1886, 2093, 2690, 2916, 3050
DraIII	CACNNNGTG	1 cut(s)	809
DrdI	GACNNNNNNGTC	1 cut(s)	3142
DriI	GACNNNNNGTC	1 cut(s)	1783
DseDI	GACNNNNNNGTC	1 cut(s)	3142
EaeI	YGGCCR	4 cut(s)	1289, 2701, 2970, 3078
Eam1104I	CTCTTC	1 cut(s)	2050
Eam1105I	GACNNNNNGTC	1 cut(s)	1783
EarI	CTCTTC	1 cut(s)	2050
EciI	GGCGGA	2 cut(s)	167, 176
Eco130I	CCWWGG	7 cut(s)	1095, 1390, 2132, 2833, 2945, 2957, 3180
Eco147I	AGGCCT	1 cut(s)	2369
Eco24I	GRGCYC	1 cut(s)	2454
Eco47I	GGWCC	3 cut(s)	1164, 1211, 2530
Eco57I	CTGAAG	3 cut(s)	1047, 1467, 2466
Eco88I	CYCGRG	1 cut(s)	1455
EcoNI	CCTNNNNNAGG	2 cut(s)	2374, 2915
EcoO109I	RGGNCCY	3 cut(s)	47, 1164, 1211
EcoRI	GAATTC	1 cut(s)	1944
EcoRII	CCWGG	3 cut(s)	1193, 2532, 3155
EcoT14I	CCWWGG	7 cut(s)	1095, 1390, 2132, 2833, 2945, 2957, 3180
EcoT38I	GRGCYC	1 cut(s)	2454
ErhI	CCWWGG	7 cut(s)	1095, 1390, 2132, 2833, 2945, 2957, 3180
Esp3I	CGTCTC	1 cut(s)	289
FalI	AAGNNNNNCTT	2 cut(s)	1079, 1111
FaqI	GGGAC	4 cut(s)	721, 1177, 1264, 2754
FauI	CCCGC	3 cut(s)	37, 162, 1079
FauNDI	CATATG	1 cut(s)	783
FbaI	TGATCA	2 cut(s)	2077, 2577
FblI	GTMKAC	1 cut(s)	2660
FokI	GGATG	8 cut(s)	680, 955, 1259, 1791, 1819, 2441, 2711, 2933
FriOI	GRGCYC	1 cut(s)	2454
FspBI	CTAG	4 cut(s)	1215, 1487, 1679, 3023
GlaI	GCGC	4 cut(s)	426, 435, 1520, 2584
GsuI	CTGGAG	3 cut(s)	449, 642, 1986
HaeII	RGCGCY	3 cut(s)	428, 437, 1522
HaeIII	GGCC	8 cut(s)	49, 1291, 2369, 2497, 2703, 2972, 2991, 3080
HhaI	GCGC	4 cut(s)	427, 436, 1521, 2585
Hin1I	GRCGYC	2 cut(s)	56, 146
Hin6I	GCGC	4 cut(s)	425, 434, 1519, 2583
HinP1I	GCGC	4 cut(s)	425, 434, 1519, 2583
HincII	GTYRAC	2 cut(s)	618, 2953
HindII	GTYRAC	2 cut(s)	618, 2953
HindIII	AAGCTT	2 cut(s)	1106, 2280
Hpy166II	GTNNAC	6 cut(s)	382, 618, 978, 1298, 2661, 2953
Hpy8I	GTNNAC	6 cut(s)	382, 618, 978, 1298, 2661, 2953
Hpy99I	CGWCG	4 cut(s)	58, 61, 151, 275
HpyCH4III	ACNGT	5 cut(s)	466, 1141, 1669, 2638, 2745
HpyCH4IV	ACGT	4 cut(s)	56, 146, 1300, 1741
HpyF3I	CTNAG	7 cut(s)	1515, 1644, 1886, 2093, 2690, 2916, 3050
HpySE526I	ACGT	4 cut(s)	56, 146, 1300, 1741
Hsp92I	GRCGYC	2 cut(s)	56, 146
HspAI	GCGC	4 cut(s)	425, 434, 1519, 2583
Kpn2I	TCCGGA	2 cut(s)	661, 2527
KpnI	GGTACC	1 cut(s)	1071
KroI	GCCGGC	1 cut(s)	499
KroNI	GCCGGC	1 cut(s)	501
Ksp22I	TGATCA	2 cut(s)	2077, 2577
LmnI	GCTCC	6 cut(s)	163, 349, 454, 508, 532, 2967
Lsp1109I	GCAGC	7 cut(s)	1003, 1324, 1421, 1949, 2097, 2314, 2441
MaeI	CTAG	4 cut(s)	1215, 1487, 1679, 3023
MaeII	ACGT	4 cut(s)	56, 146, 1300, 1741
MaeIII	GTNAC	2 cut(s)	2485, 2713
MbiI	CCGCTC	1 cut(s)	166
MfeI	CAATTG	2 cut(s)	1920, 2319
MflI	RGATCY	4 cut(s)	261, 1891, 2345, 3111
MhlI	GDGCHC	5 cut(s)	234, 459, 980, 2454, 2750
MlsI	TGGCCA	3 cut(s)	1291, 2703, 2972
MluNI	TGGCCA	3 cut(s)	1291, 2703, 2972
MlyI	GAGTC	3 cut(s)	232, 1793, 3061
MmeI	TCCRAC	8 cut(s)	174, 285, 432, 1244, 1611, 1861, 2310, 2605
Mox20I	TGGCCA	3 cut(s)	1291, 2703, 2972
MroI	TCCGGA	2 cut(s)	661, 2527
MroNI	GCCGGC	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	116
MscI	TGGCCA	3 cut(s)	1291, 2703, 2972
MseI	TTAA	8 cut(s)	438, 537, 840, 1239, 1416, 1716, 2520, 2847
MslI	CAYNNNNRTG	3 cut(s)	1380, 1506, 2888
Msp20I	TGGCCA	3 cut(s)	1291, 2703, 2972
MspA1I	CMGCKG	1 cut(s)	2786
MspCI	CTTAAG	3 cut(s)	437, 536, 1415
MspR9I	CCNGG	5 cut(s)	519, 706, 1195, 2534, 3157
MunI	CAATTG	2 cut(s)	1920, 2319
Mva1269I	GAATGC	3 cut(s)	1096, 1401, 2439
MvaI	CCWGG	3 cut(s)	1195, 2534, 3157
MvnI	CGCG	5 cut(s)	69, 275, 386, 461, 2585
NaeI	GCCGGC	1 cut(s)	501
NciI	CCSGG	2 cut(s)	519, 706
NcoI	CCATGG	3 cut(s)	1390, 2833, 2945
NdeI	CATATG	1 cut(s)	783
NgoMIV	GCCGGC	1 cut(s)	499
NmeAIII	GCCGAG	3 cut(s)	442, 972, 1547
NmuCI	GTSAC	1 cut(s)	2485
NruI	TCGCGA	1 cut(s)	69
PaeR7I	CTCGAG	1 cut(s)	1455
PagI	TCATGA	2 cut(s)	100, 2023
PaqCI	CACCTGC	2 cut(s)	2224, 2509
PceI	AGGCCT	1 cut(s)	2369
PcsI	WCGNNNNNNNCGW	3 cut(s)	186, 279, 458
PctI	GAATGC	3 cut(s)	1096, 1401, 2439
PdiI	GCCGGC	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	8 cut(s)	97, 370, 445, 469, 1511, 2068, 2570, 3097
PflFI	GACNNNGTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	1271
PfoI	TCCNGGA	2 cut(s)	517, 3155
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	3 cut(s)	231, 1792, 3060
PpsI	GAGTC	3 cut(s)	231, 1792, 3060
PpuMI	RGGWCCY	2 cut(s)	1164, 1211
Psp5II	RGGWCCY	2 cut(s)	1164, 1211
Psp6I	CCWGG	3 cut(s)	1193, 2532, 3155
PspGI	CCWGG	3 cut(s)	1193, 2532, 3155
PspPI	GGNCC	5 cut(s)	47, 1164, 1211, 2495, 2530
PspPPI	RGGWCCY	2 cut(s)	1164, 1211
PsuI	RGATCY	4 cut(s)	261, 1891, 2345, 3111
PsyI	GACNNNGTC	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	2786
RruI	TCGCGA	1 cut(s)	69
RsaI	GTAC	9 cut(s)	179, 914, 1069, 1135, 1674, 2020, 2038, 2381, 3045
RsaNI	GTAC	9 cut(s)	178, 913, 1068, 1134, 1673, 2019, 2037, 2380, 3044
RseI	CAYNNNNRTG	3 cut(s)	1380, 1506, 2888
SaqAI	TTAA	8 cut(s)	438, 537, 840, 1239, 1416, 1716, 2520, 2847
Sau96I	GGNCC	5 cut(s)	47, 1164, 1211, 2495, 2530
ScaI	AGTACT	1 cut(s)	914
SchI	GAGTC	3 cut(s)	232, 1793, 3061
ScrFI	CCNGG	5 cut(s)	519, 706, 1195, 2534, 3157
SduI	GDGCHC	5 cut(s)	234, 459, 980, 2454, 2750
SfcI	CTRYAG	1 cut(s)	1617
Sfr274I	CTCGAG	1 cut(s)	1455
SinI	GGWCC	3 cut(s)	1164, 1211, 2530
SlaI	CTCGAG	1 cut(s)	1455
SmiMI	CAYNNNNRTG	3 cut(s)	1380, 1506, 2888
SmlI	CTYRAG	8 cut(s)	437, 536, 595, 1415, 1455, 1535, 1690, 3116
SmoI	CTYRAG	8 cut(s)	437, 536, 595, 1415, 1455, 1535, 1690, 3116
SseBI	AGGCCT	1 cut(s)	2369
SspI	AATATT	2 cut(s)	2398, 3033
SspMI	CTAG	4 cut(s)	1215, 1487, 1679, 3023
StuI	AGGCCT	1 cut(s)	2369
StyD4I	CCNGG	5 cut(s)	517, 704, 1193, 2532, 3155
StyI	CCWWGG	7 cut(s)	1095, 1390, 2132, 2833, 2945, 2957, 3180
TaaI	ACNGT	5 cut(s)	466, 1141, 1669, 2638, 2745
TaiI	ACGT	4 cut(s)	59, 149, 1303, 1744
TaqI	TCGA	7 cut(s)	215, 234, 590, 990, 1456, 2685, 2886
TatI	WGTACW	2 cut(s)	912, 2036
TauI	GCSGC	4 cut(s)	44, 169, 278, 2841
TfiI	GAWTC	8 cut(s)	97, 370, 445, 469, 1511, 2068, 2570, 3097
Tru1I	TTAA	8 cut(s)	438, 537, 840, 1239, 1416, 1716, 2520, 2847
Tru9I	TTAA	8 cut(s)	438, 537, 840, 1239, 1416, 1716, 2520, 2847
TscAI	CASTG	8 cut(s)	1005, 1011, 1120, 1508, 2494, 2580, 2698, 2750
TseFI	GTSAC	1 cut(s)	2485
TseI	GCWGC	7 cut(s)	1016, 1337, 1409, 1937, 2110, 2327, 2429
Tsp45I	GTSAC	1 cut(s)	2485
TspGWI	ACGGA	3 cut(s)	813, 1246, 3148
TspRI	CASTG	8 cut(s)	1005, 1011, 1120, 1508, 2494, 2580, 2698, 2750
Tth111I	GACNNNGTC	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	1271
Vha464I	CTTAAG	3 cut(s)	437, 536, 1415
VneI	GTGCAC	1 cut(s)	976
VpaK11BI	GGWCC	3 cut(s)	1164, 1211, 2530
XagI	CCTNNNNNAGG	2 cut(s)	2374, 2915
XapI	RAATTY	6 cut(s)	493, 789, 952, 1278, 1594, 1944
XhoI	CTCGAG	1 cut(s)	1455
XmiI	GTMKAC	1 cut(s)	2660
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	4 cut(s)	1215, 1487, 1679, 3023
ZraI	GACGTC	2 cut(s)	57, 147
ZrmI	AGTACT	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.