Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001873

Physical Location & Seq

Genomic Coordinates Forward (+)

11070561 .. 11071940

Gene Structure 1380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1142700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGACCTTAGTGATGCTATTGAAGATGAAGTCAAGTGGGTAGAGGATCTGATTAAAGGAATAATTGCTGGAAATGTATTTGATCTTGGTTTTGCACAGCTTGCGGAAGTTTTCTCAAATAAGGATATGTCCTTTTTTGTTAGTTGTCAAAACCTTGTCCCTCGACCTTGGGTTATAGATGACTTGGATGCGGCAATGGGTGTGTGTGTAAGATCTGCGTGTGGGTATTCGAGTGTATTAGACCATGGACGAATGGTGTACTCTAACTGCTCTATGAATTCACTTGAAAATGAAGTTGTGGTTGTTGGAAATTTGCGAAGGGGGGTGAATCAGCAACAAAACAATAGGGTGAATTACTGGCAATCAAGGCTTCGTTCTATTATGAAGTCTTCTACAAAAGAAATTGCTTTTGATCAGCATTTGCAATATACATTACAAGGTGGAATTGACAAGCTTGCGGGTGTTATTGGCCTTACTCTTGGTCCTAGGGGAAGGAATGTTGTATTGGATAAGTGTAGTAGTCCTAAAGTTGTGGATGAGGGAGTCAAATTTGGCAAAGCTATTGAGTTACCACACAACATTGGAATTGTCAGTGAAGCACAAATTAGAGAGGTATTCAGCAAGACCAATGACTTTGAAGGTGACAGAACAACAAATACATTGAAGAGAGGGAGTGGATGCACTAGGGGTACCTATTTGGATTTAGCATGCTCTCTCGAAGGTCACCTGGAAAGCAATTTTGGTGCTTTGGCTATTGATTTACATGCTGATTTTTCTCTATTTTTCACTAGAAAATTTGATTTTTGGCTTGTTTGGGATCCAAGAGATACATGGGCTAAAGTTGTCAAGTTGATACTCTATTTTCAGTACAAGGACGACAAGCGAATATGTGTTTTTGTGAATCTATTTTGGGAATCATCAAATGGAAGGGATTTGCTTGGTTGTTGCCAGAAGTGGAGTGAATTTGAACGTCGAATTGCAACCTTTGAGTTTGATCGTGATAAGAAATCCACGGGTGTAATGGTCAACTTTGTTTCAGGAAAGAAGTCATTACTAGTGATGGGTGCTGTAGAGAATGTGCTTGAGAAAAGCACTAAGGTTCAGTTGCTTGATGACGCTGTTGTACCACTGGATAATAGCTCAAGGAACTATATCGTGCAAGCTCTTCGTGAGATGTCAACTAGTGCTTTGAAACCACTGAACGATGCACCTATTTTGAAACTCGCTGATATTGGGATTGCAATGAGCATATATGGAATTAAGAACATATCCATCAGATGGGAATGTGCTGCTGCTTTCAAACAAGTTCCCACATTCAAATTTTTTAGCCTTGTGGACAAGGCTAATTTTCAAGGGGGAAGTATTGTTGTGAACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

460

Amino Acids

51.41

Weight (kDa)

6.56

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARMT1-like_dom	PF01937	5 - 69	5e-06	Damage-control phosphatase ARMT1-like domain
Cation_ATPase	PF13246	314 - 400	3.7e-10	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07670 AT1G07670 AT1G07810
fragaria_vesca	FvH4_3g34570 FvH4_3g34570 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760
malus_domestica	MD04G1038900.v1.1 MD04G1116400.v1.1 MD11G1117700.v1.1 MD12G1132100.v1.1 MD13G1142700.v1.1
prunus_persica	Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1
pyrus_communis	pycom03g12390 pycom03g12400 pycom04g10640 pycom07g10780 pycom11g09870 pycom12g12810 pycom16g18850
rosa_chinensis	RchiOBHm_Chr3g0467981 RchiOBHm_Chr5g0062231
rosa_laevigata	RLG00000024462 RLG00000035545
rosa_multiflora	Rmu_co8021382.1_g000001 Rmu_sc0001793.1_g000060 Rmu_ssc0000409.1_g000035
rosa_roxburghii	Rroxscaffold_1G00018460 Rroxscaffold_6G00413240
rosa_rugosa	Rorug03G0090700 Rorug03G0090800 Rorug05G0347300
rosa_samantha	Rh3AG139600 Rh3BG161100 Rh3CG161000 Rh3DG161500 Rh5AG407900 Rh5BG421600 Rh5CG445600 Rh5DG436600
rosa_wichuraiana	Rw3G013200 Rw5G038440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	689
AccB7I	CCANNNNNTGG	1 cut(s)	1278
AciI	CCGC	3 cut(s)	104, 191, 458
AclWI	GGATC	3 cut(s)	54, 812, 825
AcsI	RAATTY	6 cut(s)	277, 310, 548, 794, 962, 1319
AfaI	GTAC	4 cut(s)	260, 691, 869, 1125
AfiI	CCNNNNNNNGG	1 cut(s)	1278
AhlI	ACTAGT	2 cut(s)	1054, 1181
AjnI	CCWGG	1 cut(s)	726
AjuI	GAANNNNNNNTTGG	4 cut(s)	488, 520, 723, 755
AluBI	AGCT	5 cut(s)	100, 454, 560, 1140, 1163
AluI	AGCT	5 cut(s)	100, 454, 560, 1140, 1163
AlwI	GGATC	3 cut(s)	54, 812, 825
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	1289, 1292
ApoI	RAATTY	6 cut(s)	277, 310, 548, 794, 962, 1319
Asp718I	GGTACC	1 cut(s)	689
AspA2I	CCTAGG	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	4, 482
AsuHPI	GGTGA	4 cut(s)	337, 361, 653, 716
AvaII	GGWCC	2 cut(s)	4, 482
AvrII	CCTAGG	1 cut(s)	485
BamHI	GGATCC	1 cut(s)	817
BanI	GGYRCC	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	1276, 1279
BccI	CCATC	3 cut(s)	1054, 1272, 1280
BcgI	CGANNNNNNTGC	2 cut(s)	1148, 1182
BciT130I	CCWGG	1 cut(s)	728
BclI	TGATCA	1 cut(s)	412
BcuI	ACTAGT	2 cut(s)	1054, 1181
BfaI	CTAG	5 cut(s)	486, 684, 789, 1055, 1182
BfmI	CTRYAG	1 cut(s)	1068
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	3 cut(s)	192, 1290, 1293
BlnI	CCTAGG	1 cut(s)	485
BlsI	GCNGC	3 cut(s)	193, 1291, 1294
Bme1390I	CCNGG	1 cut(s)	728
Bme18I	GGWCC	2 cut(s)	4, 482
BmgT120I	GGNCC	2 cut(s)	4, 482
BmiI	GGNNCC	2 cut(s)	691, 819
BmrFI	CCNGG	1 cut(s)	728
BmsI	GCATC	4 cut(s)	4, 178, 668, 1195
BpiI	GAAGAC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	1103, 1126
BsaJI	CCNNGG	4 cut(s)	167, 244, 485, 1011
Bsc4I	CCNNNNNNNGG	1 cut(s)	1278
Bse1I	ACTGG	2 cut(s)	362, 1134
Bse3DI	GCAATG	2 cut(s)	201, 1248
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	4 cut(s)	167, 244, 485, 1011
BseGI	GGATG	3 cut(s)	193, 541, 683
BseLI	CCNNNNNNNGG	1 cut(s)	1278
BseMI	GCAATG	2 cut(s)	201, 1248
BseNI	ACTGG	2 cut(s)	362, 1134
BseXI	GCAGC	2 cut(s)	1276, 1279
BshFI	GGCC	1 cut(s)	471
BshNI	GGYRCC	1 cut(s)	689
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	1278
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	471
Bsp143I	GATC	6 cut(s)	46, 82, 212, 412, 817, 994
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	3 cut(s)	104, 191, 458
BspANI	GGCC	1 cut(s)	471
BspLI	GGNNCC	2 cut(s)	691, 819
BspPI	GGATC	3 cut(s)	54, 812, 825
BspQI	GCTCTTC	1 cut(s)	1170
BspT107I	GGYRCC	1 cut(s)	689
BsrDI	GCAATG	2 cut(s)	201, 1248
BsrI	ACTGG	2 cut(s)	362, 1134
BssECI	CCNNGG	4 cut(s)	167, 244, 485, 1011
BssMI	GATC	6 cut(s)	46, 82, 212, 412, 817, 994
BssT1I	CCWWGG	3 cut(s)	167, 244, 485
Bst2UI	CCWGG	1 cut(s)	728
Bst6I	CTCTTC	2 cut(s)	659, 1170
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	4 cut(s)	102, 456, 709, 1161
BstDEI	CTNAG	2 cut(s)	8, 1095
BstDSI	CCRYGG	2 cut(s)	244, 1011
BstEII	GGTNACC	1 cut(s)	722
BstF5I	GGATG	3 cut(s)	193, 541, 683
BstKTI	GATC	6 cut(s)	49, 85, 215, 415, 820, 997
BstMBI	GATC	6 cut(s)	46, 82, 212, 412, 817, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 367
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	2 cut(s)	711, 767
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	1 cut(s)	726
BstSFI	CTRYAG	1 cut(s)	1068
BstV1I	GCAGC	2 cut(s)	1276, 1279
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	3 cut(s)	46, 212, 817
BstYI	RGATCY	3 cut(s)	46, 212, 817
BsuRI	GGCC	1 cut(s)	471
BtgI	CCRYGG	2 cut(s)	244, 1011
BtsCI	GGATG	3 cut(s)	193, 541, 683
BtsIMutI	CAGTG	3 cut(s)	598, 1127, 1196
Cac8I	GCNNGC	4 cut(s)	102, 456, 709, 1161
Cfr13I	GGNCC	2 cut(s)	4, 482
CseI	GACGC	1 cut(s)	1124
Csp6I	GTAC	4 cut(s)	259, 690, 868, 1124
CviAII	CATG	4 cut(s)	245, 708, 764, 831
CviQI	GTAC	4 cut(s)	259, 690, 868, 1124
DdeI	CTNAG	2 cut(s)	8, 1095
DpnI	GATC	6 cut(s)	48, 84, 214, 414, 819, 996
DpnII	GATC	6 cut(s)	46, 82, 212, 412, 817, 994
Eam1104I	CTCTTC	2 cut(s)	659, 1170
EarI	CTCTTC	2 cut(s)	659, 1170
Eco130I	CCWWGG	3 cut(s)	167, 244, 485
Eco47I	GGWCC	2 cut(s)	4, 482
Eco91I	GGTNACC	1 cut(s)	722
EcoO65I	GGTNACC	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	726
EcoT14I	CCWWGG	3 cut(s)	167, 244, 485
ErhI	CCWWGG	3 cut(s)	167, 244, 485
FaeI	CATG	4 cut(s)	248, 711, 767, 834
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	244, 707, 763, 830
FauI	CCCGC	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	192, 1290, 1293
FokI	GGATG	3 cut(s)	200, 548, 690
Fsp4HI	GCNGC	3 cut(s)	192, 1290, 1293
FspBI	CTAG	5 cut(s)	486, 684, 789, 1055, 1182
GluI	GCNGC	3 cut(s)	192, 1290, 1293
HaeIII	GGCC	1 cut(s)	471
HgaI	GACGC	1 cut(s)	1124
Hin1II	CATG	4 cut(s)	248, 711, 767, 834
HincII	GTYRAC	2 cut(s)	1027, 1179
HindII	GTYRAC	2 cut(s)	1027, 1179
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	4 cut(s)	328, 543, 901, 914
HphI	GGTGA	4 cut(s)	337, 361, 653, 716
Hpy166II	GTNNAC	5 cut(s)	259, 1027, 1179, 1336, 1372
Hpy188I	TCNGA	2 cut(s)	51, 1277
Hpy188III	TCNNGA	4 cut(s)	716, 998, 1038, 1169
Hpy8I	GTNNAC	5 cut(s)	259, 1027, 1179, 1336, 1372
Hpy99I	CGWCG	1 cut(s)	975
HpyAV	CCTTC	5 cut(s)	312, 486, 632, 713, 921
HpyCH4IV	ACGT	1 cut(s)	970
HpyCH4V	TGCA	7 cut(s)	95, 424, 681, 980, 1159, 1208, 1241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 367
HpyF3I	CTNAG	2 cut(s)	8, 1095
HpySE526I	ACGT	1 cut(s)	970
Hsp92II	CATG	4 cut(s)	248, 711, 767, 834
KpnI	GGTACC	1 cut(s)	693
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	6 cut(s)	46, 82, 212, 412, 817, 994
LguI	GCTCTTC	1 cut(s)	1170
LpnPI	CCDG	7 cut(s)	54, 343, 713, 740, 962, 1023, 1115
Lsp1109I	GCAGC	2 cut(s)	1276, 1279
LweI	GCATC	4 cut(s)	4, 178, 668, 1195
MaeI	CTAG	5 cut(s)	486, 684, 789, 1055, 1182
MaeII	ACGT	1 cut(s)	970
MaeIII	GTNAC	3 cut(s)	567, 641, 722
MalI	GATC	6 cut(s)	48, 84, 214, 414, 819, 996
MboI	GATC	6 cut(s)	46, 82, 212, 412, 817, 994
MboII	GAAGA	4 cut(s)	35, 381, 676, 1157
MflI	RGATCY	3 cut(s)	46, 212, 817
MlyI	GAGTC	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	5 cut(s)	37, 171, 532, 604, 662
MseI	TTAA	2 cut(s)	54, 1260
MspR9I	CCNGG	1 cut(s)	728
MvaI	CCWGG	1 cut(s)	728
MwoI	GCNNNNNNNGC	2 cut(s)	101, 367
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	6 cut(s)	46, 82, 212, 412, 817, 994
NlaIII	CATG	4 cut(s)	248, 711, 767, 834
NlaIV	GGNNCC	2 cut(s)	691, 819
NmuCI	GTSAC	2 cut(s)	641, 722
NspI	RCATGY	2 cut(s)	711, 767
PaeI	GCATGC	1 cut(s)	711
PciSI	GCTCTTC	1 cut(s)	1170
PfeI	GAWTC	3 cut(s)	328, 901, 914
PflMI	CCANNNNNTGG	1 cut(s)	1278
PkrI	GCNGC	3 cut(s)	193, 1291, 1294
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	726
PspEI	GGTNACC	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	2 cut(s)	691, 819
PspPI	GGNCC	2 cut(s)	4, 482
PsrI	GAACNNNNNNTAC	2 cut(s)	640, 672
PsuI	RGATCY	3 cut(s)	46, 212, 817
RsaI	GTAC	4 cut(s)	260, 691, 869, 1125
RsaNI	GTAC	4 cut(s)	259, 690, 868, 1124
SapI	GCTCTTC	1 cut(s)	1170
SaqAI	TTAA	2 cut(s)	54, 1260
SatI	GCNGC	3 cut(s)	192, 1290, 1293
Sau3AI	GATC	6 cut(s)	46, 82, 212, 412, 817, 994
Sau96I	GGNCC	2 cut(s)	4, 482
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	1 cut(s)	728
SfaNI	GCATC	4 cut(s)	4, 178, 668, 1195
SfcI	CTRYAG	1 cut(s)	1068
SinI	GGWCC	2 cut(s)	4, 482
SmlI	CTYRAG	2 cut(s)	1082, 1141
SmoI	CTYRAG	2 cut(s)	1082, 1141
SpeI	ACTAGT	2 cut(s)	1054, 1181
SphI	GCATGC	1 cut(s)	711
SsiI	CCGC	3 cut(s)	104, 191, 458
SspMI	CTAG	5 cut(s)	486, 684, 789, 1055, 1182
StyD4I	CCNGG	1 cut(s)	726
StyI	CCWWGG	3 cut(s)	167, 244, 485
TaiI	ACGT	1 cut(s)	973
TaqI	TCGA	4 cut(s)	163, 230, 717, 973
TatI	WGTACW	2 cut(s)	258, 867
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	328, 901, 914
Tru1I	TTAA	2 cut(s)	54, 1260
Tru9I	TTAA	2 cut(s)	54, 1260
TscAI	CASTG	3 cut(s)	598, 1134, 1203
TseFI	GTSAC	2 cut(s)	641, 722
TseI	GCWGC	2 cut(s)	1289, 1292
Tsp45I	GTSAC	2 cut(s)	641, 722
TspDTI	ATGAA	4 cut(s)	42, 290, 306, 398
TspRI	CASTG	3 cut(s)	598, 1134, 1203
Van91I	CCANNNNNTGG	1 cut(s)	1278
VpaK11BI	GGWCC	2 cut(s)	4, 482
XapI	RAATTY	6 cut(s)	277, 310, 548, 794, 962, 1319
XceI	RCATGY	2 cut(s)	711, 767
XcmI	CCANNNNNNNNNTGG	2 cut(s)	828, 1018
XmaJI	CCTAGG	1 cut(s)	485
XspI	CTAG	5 cut(s)	486, 684, 789, 1055, 1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.