Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001873

Physical Location & Seq

Genomic Coordinates Reverse (-)

61868780 .. 61875482

Gene Structure 6703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG445600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3165 bp

ATGGGAGACACTGACAAGTCGGCGGCCACCAAAACGGAGTCGTTTCCGGCGTGGTCGAAGGACGTGAAGGAATGCGAGGACGAGTTCAAGGTCAGCCGCGACTCGGGACTGTCGGAGGAGGAAGTCGAGAAGCGCCGGGCGGTGTACGGATGGAACGAACTGGAGAAGCACGAGGACCAGTCGATCCTGAAGCTCCTGATGGATCAGCTCAGCGACACGCTCGTCAGGGTTCTGTTGTTCGCGGCGGTTATCTCCTTCGTTCTCGCATGGTACGAAGGCGAGGAGACCGGCGAGATGGACATCACCGCGTTCGTGGAGCCGTTGGTGATCTTTCTGATCCTGATCGTGAATGCGATCGTCGGAATCTGGCAGGAGAGCAACGCCGAGAAGGCGCTGGAGGCCTTGAAGGAGATTCAGTCGGAGCAGGCGGCGGTGGTCAGGGACGGGAAGAAGGTGCCGAATTTGGCGGCGAAGGAGCTCGTTCCGGGCGATATTGTGGAGCTGAGAGCCGGCGATAAGGTTCCGGCGGATATGAGGGTTTTGAGTTTGGTGAGCTCGACGGTGAGGATCGAGCAAGGGTCGTTGACCGGAGAGAGTGAGGCGGTTAGCAAGACGGCGAAGGCGGTGGCGGAGAATTCGGACATTCAGGGGAAGAAGTGTATGGTTTTCGCGGGAACGACGGTGGTGAACGGGAATTGCATGTGTTTGGTGACTCAGATTGGGATGAAGACGGAGATAGGGCAGGTGCATTCTCAGATTCAGGAGGCTTCACAGAGTGAGGAAGAGACTCCATTGAAGAAGAAGCTGAATGAGTTTGGGGAGATTTTGACTGCCATAATTGGTGTCATTTGTGCTTTGGTTTGGTTGATCAATCTCAAGTACTTTCTCAGCTGGGAAATGGTTGATGGGTGGCCGACGAATTTCGAATTTTCATTCGAGAGGTGTACTTATTACTTCAAGATTGCTGTGGCATTGGCCGTGGCGGCAATTCCAGAAGGCCTGCCTGCAGTGATCACCACCTGTTTGGCGCTTGGGACGAGGAAGATGGCTCAGAAGAATGCACTTGTTAGGAAGCTGCCAAGTGTGGAGACTCTAGGCTGTACTACTGTGATTTGTTCTGATAAGACCGGTACTCTAACTACTAATCAGATGGCTGTGTCGAAGCTTGTGGCTATTGGTACTAGGCCTGGTACTCTTCGAGCCTTTGATGTTGAGGGAACCACATACAACCCTTCTGATGGGAAAATACCAGACTGGCCGCCGGCTGGTCATATGGATACCAATGTTCAAATGATTGCGAAGATCTCTGCTCTGTGTAATGATGCTGGTGTTGAATTGTCAGGGAGTCATTATGTTGCCAGTGGAATGCCCACAGAGGCAGCCTTGAAGGTTCTGGTTGAGAAGATGGGAGTTCCTGAATCACTCAATACTTGTTTCAATTCAGGTTCGAAGGATATACTGCGTTGTTCTACACTTTGGAAGGAAGTTGATCGCCGGATTGCAACACTTGAGTTTGACCGTGACCGCAAATCCATGGGTGTAATTGTGAATACTGGCGCCGGAAAGAACTCTCTTTATGTCAAGGGTGCAGTTGAAAATGTATTGGAGCGAAGCTCATCCATTCAGTTGGTTGATGGCTCCATTGCAGAATTGGACCAAAATTTCAAAGATCTTATCTTAGGCAGCCTTCATGAAATGTCTAGTAGTGCATTGCGCTGTTTGGGGTTTGCATACAAGGAGGACCTGCCAGAGTTCGCAGGGTATAATGGTGATGAAGACCATCCAGCTCATCAGCTTTTACTTGATCCTTCCAACTACTCTTCAATTGAGAGTAAACTTGTTTTTGTTGGCTTTGTTGGTCTAAGGGATCCTCCACGAAAAGAGGTCCGTCAAGCAATTGAGGACTGCAAAACTGCTGGAATCCGTGTTATGGTTATTACGGGAGATAACAAGAATACAGCTGAAGCTATTTGCCGTGAAATAGGTGTATTTGGACCTTCTGAAAATATCAGTTCGAGAAGCTTAACAGGGAAAGAATTCATACATCACCATGATCAGAAAAATCATTTGAGACAACGTGGAGGCCTTTTGTTTTCTAGAGCTGAACCAAGGCATAAACAAGAGATAGTGAGGCTGCTAAAGGAAGACGGTGAAGTGGTTGCTATGACTGGTGATGGAGTGAATGATGCACCTGCCTTGAAGTTGGCTGACATTGGGATTGCCATGGGCATTGCTGGGACAGAGGTTGCAAAAGAGGCCTCTGATATGGTATTAGCAGATGACAATTTTAGCACCATAGTTTCTGCTGTTGGAGAAGGCAGATCTATTTACAACAACATGAAAGCTTTTATCAGGTACATGATTTCATCAAACATTGGCGAAGTTGCCTCCATTTTTCTGACAGCGGCTCTGGGAATTCCAGAAGGCATGATTCCAGTTCAGCTTCTGTGGGTCAACCTGGTTACTGATGGACCCCCAGCAACAGCTCTAGGATTCAATCCTCCGGACAAAGATATAATGGAGAAGCCCCCTAGAAGAAGCAACGACTCATTGATCAGTGTGTGGATCTTATTTCGTTATCTGGTGATTGGAGTCTATGTCGGTGTTGCAACAGTAGGGGTGTTCATTATCTGGTACACCCATTCCTCATTTTTGGGCATTGACCTGAGTGGAGATGGCCATAGTCTTGTGACCTACCATCAACTTGCAAACTGGCACAAGTGCACTTCTTGGGAGGGGTTTTCAGCATCTAGCTTTACAGCTGGAACTCAGGTGTTCACTTTTGACACAGATCCATGTGAGTATTTCCATTCGGGCAAGATTAAAGCCTCAACTCTCTCCCTCTCAGTCTTGGTTGCCATTGAGATGTTCAACTCCCTCAATGCCCTATCTGAGGACGGTAGCCTTCTGACGATGCCACCCTGGGTTAATCCATGGCTCCTTCTTGCCATGTCCGTCTCCTTCGGGTTGCACTTTTTGATTCTCTACGTGCCATTCCTTGCTCAAGTGTTCGGCATTGTCCCCCTCAGCCTGAATGAATGGCTCTTGGTGTTGGCAGTTGCTTTTCCGGTTGTCTTAATTGATGAGGTGCTGAAGTTTGTAGGAAGATGTACAACTAAGTTGCCAGATTCCGCTGTAGAGCAATCCAAGCGCAAAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

1054

Amino Acids

115.15

Weight (kDa)

5.12

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	18 - 85	8.6e-19	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	138 - 253	5.1e-24	P-type ATPase actuator domain
Cation_ATPase	PF13246	429 - 628	4.3e-37	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	616 - 737	2e-15	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	809 - 1034	1.6e-49	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07670 AT1G07670 AT1G07810
fragaria_vesca	FvH4_3g34570 FvH4_3g34570 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760
malus_domestica	MD04G1038900.v1.1 MD04G1116400.v1.1 MD11G1117700.v1.1 MD12G1132100.v1.1 MD13G1142700.v1.1
prunus_persica	Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1
pyrus_communis	pycom03g12390 pycom03g12400 pycom04g10640 pycom07g10780 pycom11g09870 pycom12g12810 pycom16g18850
rosa_chinensis	RchiOBHm_Chr3g0467981 RchiOBHm_Chr5g0062231
rosa_laevigata	RLG00000024462 RLG00000035545
rosa_multiflora	Rmu_co8021382.1_g000001 Rmu_sc0001793.1_g000060 Rmu_ssc0000409.1_g000035
rosa_roxburghii	Rroxscaffold_1G00018460 Rroxscaffold_6G00413240
rosa_rugosa	Rorug03G0090700 Rorug03G0090800 Rorug05G0347300
rosa_samantha	Rh3AG139600 Rh3BG161100 Rh3CG161000 Rh3DG161500 Rh5AG407900 Rh5BG421600 Rh5CG445600 Rh5DG436600
rosa_wichuraiana	Rw3G013200 Rw5G038440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	733, 2200
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc36I	ACCTGC	3 cut(s)	733, 1752, 2200
AccB1I	GGYRCC	2 cut(s)	454, 1556
AccII	CGCG	4 cut(s)	99, 242, 308, 671
AccIII	TCCGGA	1 cut(s)	2503
AclWI	GGATC	9 cut(s)	178, 210, 331, 575, 1799, 1862, 1875, 2573, 2786
AcoI	YGGCCR	5 cut(s)	24, 911, 975, 1256, 2677
AcsI	RAATTY	7 cut(s)	460, 634, 919, 926, 1660, 2036, 2415
AcuI	CTGAAG	3 cut(s)	209, 1983, 3113
AcyI	GRCGYC	1 cut(s)	1557
AdeI	CACNNNGTG	1 cut(s)	776
AfiI	CCNNNNNNNGG	5 cut(s)	103, 1238, 1265, 1930, 2893
AgeI	ACCGGT	1 cut(s)	1127
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	3 cut(s)	1186, 2457, 2921
Alw21I	GWGCWC	3 cut(s)	480, 557, 2726
Alw26I	GTCTC	5 cut(s)	278, 779, 1082, 2065, 2962
Alw44I	GTGCAC	1 cut(s)	2722
AlwI	GGATC	9 cut(s)	178, 210, 331, 575, 1799, 1862, 1875, 2573, 2786
AlwNI	CAGNNNCTG	1 cut(s)	2446
Ama87I	CYCGRG	1 cut(s)	103
Aor13HI	TCCGGA	1 cut(s)	2503
ApaLI	GTGCAC	1 cut(s)	2722
ApeKI	GCWGC	4 cut(s)	1075, 1379, 1683, 2134
ApoI	RAATTY	7 cut(s)	460, 634, 919, 926, 1660, 2036, 2415
AsiGI	ACCGGT	1 cut(s)	1127
Asp700I	GAANNNNTTC	1 cut(s)	2036
AspLEI	GCGC	6 cut(s)	135, 394, 1030, 1559, 1716, 3153
AspS9I	GGNCC	6 cut(s)	175, 1654, 1741, 1885, 1994, 2471
AsuC2I	CCSGG	2 cut(s)	137, 486
AsuII	TTCGAA	2 cut(s)	924, 1448
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	6 cut(s)	175, 1654, 1741, 1885, 1994, 2471
BaeGI	GKGCMC	1 cut(s)	2726
BaeI	ACNNNNGTAYC	2 cut(s)	1269, 1302
BalI	TGGCCA	1 cut(s)	2679
BamHI	GGATCC	1 cut(s)	1867
BanI	GGYRCC	2 cut(s)	454, 1556
BanII	GRGCYC	2 cut(s)	480, 557
BauI	CACGAG	1 cut(s)	170
BbsI	GAAGAC	3 cut(s)	734, 1782, 2151
Bbv12I	GWGCWC	3 cut(s)	480, 557, 2726
BbvCI	CCTCAGC	1 cut(s)	3026
BbvI	GCAGC	4 cut(s)	1062, 1391, 1695, 2121
BceAI	ACGGC	4 cut(s)	304, 630, 962, 1959
BciT130I	CCWGG	3 cut(s)	1188, 2459, 2923
BciVI	GTATCC	1 cut(s)	1270
BclI	TGATCA	4 cut(s)	867, 1011, 2053, 2553
BcnI	CCSGG	2 cut(s)	137, 486
BcoDI	GTCTC	5 cut(s)	278, 779, 1082, 2065, 2962
BfaI	CTAG	7 cut(s)	1094, 1182, 1701, 2097, 2489, 2532, 2751
BfmI	CTRYAG	2 cut(s)	1005, 3135
BfoI	RGCGCY	4 cut(s)	136, 395, 1031, 1560
BfuAI	ACCTGC	3 cut(s)	733, 1752, 2200
BfuI	GTATCC	1 cut(s)	1270
BglI	GCCNNNNNGGC	2 cut(s)	389, 983
BglII	AGATCT	3 cut(s)	1302, 1669, 2321
BlpI	GCTNAGC	1 cut(s)	209
BmcAI	AGTACT	1 cut(s)	881
Bme1390I	CCNGG	5 cut(s)	137, 486, 1188, 2459, 2923
Bme18I	GGWCC	6 cut(s)	175, 1654, 1741, 1885, 1994, 2471
BmeT110I	CYCGRG	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	6 cut(s)	175, 1654, 1741, 1885, 1994, 2471
BmiI	GGNNCC	9 cut(s)	318, 456, 522, 1219, 1558, 1639, 1869, 2473, 2939
BmrFI	CCNGG	5 cut(s)	137, 486, 1188, 2459, 2923
BmsI	GCATC	4 cut(s)	1312, 2176, 2756, 2904
BpiI	GAAGAC	3 cut(s)	734, 1782, 2151
BplI	GAGNNNNNCTC	2 cut(s)	1598, 1630
BpmI	CTGGAG	2 cut(s)	182, 416
Bpu10I	CCTNAGC	1 cut(s)	3026
Bpu1102I	GCTNAGC	1 cut(s)	209
Bpu14I	TTCGAA	2 cut(s)	924, 1448
BpuEI	CTTGAG	3 cut(s)	860, 1529, 2988
BpuMI	CCSGG	2 cut(s)	137, 486
BsaAI	YACGTR	1 cut(s)	2989
BsaBI	GATNNNNATC	2 cut(s)	299, 341
BsaHI	GRCGYC	1 cut(s)	1557
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	7 cut(s)	978, 1533, 2108, 2223, 2921, 2922, 2933
BsaWI	WCCGGW	4 cut(s)	587, 1127, 2503, 3067
BsaXI	ACNNNNNCTCC	4 cut(s)	401, 431, 2583, 2613
Bsc4I	CCNNNNNNNGG	5 cut(s)	103, 1238, 1265, 1930, 2893
Bse118I	RCCGGY	4 cut(s)	287, 509, 1127, 1261
Bse1I	ACTGG	8 cut(s)	165, 178, 1259, 1359, 1558, 2173, 2435, 2717
Bse3DI	GCAATG	3 cut(s)	1641, 1709, 2229
Bse8I	GATNNNNATC	2 cut(s)	299, 341
BseAI	TCCGGA	1 cut(s)	2503
BseBI	CCWGG	3 cut(s)	1188, 2459, 2923
BseDI	CCNNGG	7 cut(s)	978, 1533, 2108, 2223, 2921, 2922, 2933
BseGI	GGATG	4 cut(s)	155, 729, 1616, 1780
BseJI	GATNNNNATC	2 cut(s)	299, 341
BseLI	CCNNNNNNNGG	5 cut(s)	103, 1238, 1265, 1930, 2893
BseMI	GCAATG	3 cut(s)	1641, 1709, 2229
BseNI	ACTGG	8 cut(s)	165, 178, 1259, 1359, 1558, 2173, 2435, 2717
BseRI	GAGGAG	2 cut(s)	131, 296
BseSI	GKGCMC	1 cut(s)	2726
BseXI	GCAGC	4 cut(s)	1062, 1391, 1695, 2121
BseYI	CCCAGC	3 cut(s)	891, 2234, 2476
BsgI	GTGCAG	1 cut(s)	1608
Bsh1236I	CGCG	4 cut(s)	99, 242, 308, 671
Bsh1285I	CGRYCG	1 cut(s)	357
BshNI	GGYRCC	2 cut(s)	454, 1556
BshTI	ACCGGT	1 cut(s)	1127
BsiEI	CGRYCG	1 cut(s)	357
BsiHKAI	GWGCWC	3 cut(s)	480, 557, 2726
BsiHKCI	CYCGRG	1 cut(s)	103
BslFI	GGGAC	5 cut(s)	120, 455, 1048, 2251, 3005
BslI	CCNNNNNNNGG	5 cut(s)	103, 1238, 1265, 1930, 2893
BsmAI	GTCTC	5 cut(s)	278, 779, 1082, 2065, 2962
BsmBI	CGTCTC	1 cut(s)	2962
BsmFI	GGGAC	5 cut(s)	120, 455, 1048, 2251, 3005
BsmI	GAATGC	5 cut(s)	77, 355, 748, 1063, 1371
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	103
Bsp119I	TTCGAA	2 cut(s)	924, 1448
Bsp1286I	GDGCHC	3 cut(s)	480, 557, 2726
Bsp13I	TCCGGA	1 cut(s)	2503
Bsp1407I	TGTACA	1 cut(s)	3110
Bsp1720I	GCTNAGC	1 cut(s)	209
Bsp19I	CCATGG	3 cut(s)	1533, 2223, 2933
BspEI	TCCGGA	1 cut(s)	2503
BspFNI	CGCG	4 cut(s)	99, 242, 308, 671
BspHI	TCATGA	1 cut(s)	1690
BspLI	GGNNCC	9 cut(s)	318, 456, 522, 1219, 1558, 1639, 1869, 2473, 2939
BspMAI	CTGCAG	1 cut(s)	1009
BspMI	ACCTGC	3 cut(s)	733, 1752, 2200
BspPI	GGATC	9 cut(s)	178, 210, 331, 575, 1799, 1862, 1875, 2573, 2786
BspT104I	TTCGAA	2 cut(s)	924, 1448
BspT107I	GGYRCC	2 cut(s)	454, 1556
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	3 cut(s)	1641, 1709, 2229
BsrFI	RCCGGY	4 cut(s)	287, 509, 1127, 1261
BsrGI	TGTACA	1 cut(s)	3110
BsrI	ACTGG	8 cut(s)	165, 178, 1259, 1359, 1558, 2173, 2435, 2717
BssAI	RCCGGY	4 cut(s)	287, 509, 1127, 1261
BssECI	CCNNGG	7 cut(s)	978, 1533, 2108, 2223, 2921, 2922, 2933
BssNI	GRCGYC	1 cut(s)	1557
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	4 cut(s)	1533, 2108, 2223, 2933
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	3 cut(s)	1188, 2459, 2923
Bst4CI	ACNGT	8 cut(s)	111, 562, 682, 1108, 1520, 2150, 2614, 2900
Bst6I	CTCTTC	3 cut(s)	777, 1200, 1825
BstACI	GRCGYC	1 cut(s)	1557
BstAUI	TGTACA	1 cut(s)	3110
BstBAI	YACGTR	1 cut(s)	2989
BstBI	TTCGAA	2 cut(s)	924, 1448
BstC8I	GCNNGC	5 cut(s)	426, 511, 1001, 1005, 1263
BstDSI	CCRYGG	4 cut(s)	978, 1533, 2223, 2933
BstENI	CCTNNNNNAGG	1 cut(s)	2891
BstF5I	GGATG	4 cut(s)	155, 729, 1616, 1780
BstFNI	CGCG	4 cut(s)	99, 242, 308, 671
BstH2I	RGCGCY	4 cut(s)	136, 395, 1031, 1560
BstHHI	GCGC	6 cut(s)	135, 394, 1030, 1559, 1716, 3153
BstMAI	GTCTC	5 cut(s)	278, 779, 1082, 2065, 2962
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	5 cut(s)	389, 398, 983, 2255, 3148
BstNI	CCWGG	3 cut(s)	1188, 2459, 2923
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	5 cut(s)	135, 484, 1186, 2457, 2921
BstSFI	CTRYAG	2 cut(s)	1005, 3135
BstSLI	GKGCMC	1 cut(s)	2726
BstUI	CGCG	4 cut(s)	99, 242, 308, 671
BstV1I	GCAGC	4 cut(s)	1062, 1391, 1695, 2121
BstV2I	GAAGAC	3 cut(s)	734, 1782, 2151
BstX2I	RGATCY	6 cut(s)	1302, 1669, 1867, 2321, 2565, 2791
BstXI	CCANNNNNNTGG	2 cut(s)	1024, 1627
BstYI	RGATCY	6 cut(s)	1302, 1669, 1867, 2321, 2565, 2791
BsuI	GTATCC	1 cut(s)	1270
BtgI	CCRYGG	4 cut(s)	978, 1533, 2223, 2933
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	155, 729, 1616, 1780
BtsI	GCAGTG	1 cut(s)	1014
BtsIMutI	CAGTG	4 cut(s)	9, 1014, 1366, 2563
BveI	ACCTGC	3 cut(s)	733, 1752, 2200
Cac8I	GCNNGC	5 cut(s)	426, 511, 1001, 1005, 1263
CaiI	CAGNNNCTG	1 cut(s)	2446
CciI	TCATGA	1 cut(s)	1690
CfoI	GCGC	6 cut(s)	135, 394, 1030, 1559, 1716, 3153
Cfr10I	RCCGGY	4 cut(s)	287, 509, 1127, 1261
Cfr13I	GGNCC	6 cut(s)	175, 1654, 1741, 1885, 1994, 2471
CsiI	ACCWGGT	1 cut(s)	2457
CspAI	ACCGGT	1 cut(s)	1127
DinI	GGCGCC	1 cut(s)	1558
DraIII	CACNNNGTG	1 cut(s)	776
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	5 cut(s)	24, 911, 975, 1256, 2677
Eam1104I	CTCTTC	3 cut(s)	777, 1200, 1825
EarI	CTCTTC	3 cut(s)	777, 1200, 1825
EciI	GGCGGA	2 cut(s)	542, 644
Ecl136II	GAGCTC	2 cut(s)	478, 555
Eco130I	CCWWGG	4 cut(s)	1533, 2108, 2223, 2933
Eco147I	AGGCCT	5 cut(s)	401, 999, 1186, 2085, 2258
Eco24I	GRGCYC	2 cut(s)	480, 557
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	6 cut(s)	175, 1654, 1741, 1885, 1994, 2471
Eco53kI	GAGCTC	2 cut(s)	478, 555
Eco57I	CTGAAG	3 cut(s)	209, 1983, 3113
Eco88I	CYCGRG	1 cut(s)	103
EcoICRI	GAGCTC	2 cut(s)	478, 555
EcoNI	CCTNNNNNAGG	1 cut(s)	2891
EcoO109I	RGGNCCY	1 cut(s)	1741
EcoRI	GAATTC	3 cut(s)	634, 2036, 2415
EcoRII	CCWGG	3 cut(s)	1186, 2457, 2921
EcoT14I	CCWWGG	4 cut(s)	1533, 2108, 2223, 2933
EcoT38I	GRGCYC	2 cut(s)	480, 557
EgeI	GGCGCC	1 cut(s)	1558
EheI	GGCGCC	1 cut(s)	1558
ErhI	CCWWGG	4 cut(s)	1533, 2108, 2223, 2933
Esp3I	CGTCTC	1 cut(s)	2962
FaqI	GGGAC	5 cut(s)	120, 455, 1048, 2251, 3005
FauI	CCCGC	1 cut(s)	664
FauNDI	CATATG	1 cut(s)	1272
FbaI	TGATCA	4 cut(s)	867, 1011, 2053, 2553
FokI	GGATG	4 cut(s)	162, 736, 1603, 1767
FriOI	GRGCYC	2 cut(s)	480, 557
FspBI	CTAG	7 cut(s)	1094, 1182, 1701, 2097, 2489, 2532, 2751
GlaI	GCGC	6 cut(s)	134, 393, 1029, 1558, 1715, 3152
GsaI	CCCAGC	3 cut(s)	895, 2238, 2480
GsuI	CTGGAG	2 cut(s)	182, 416
HaeII	RGCGCY	4 cut(s)	136, 395, 1031, 1560
HhaI	GCGC	6 cut(s)	135, 394, 1030, 1559, 1716, 3153
Hin1I	GRCGYC	1 cut(s)	1557
Hin6I	GCGC	6 cut(s)	133, 392, 1028, 1557, 1714, 3151
HinP1I	GCGC	6 cut(s)	133, 392, 1028, 1557, 1714, 3151
HincII	GTYRAC	2 cut(s)	585, 2455
HindII	GTYRAC	2 cut(s)	585, 2455
HindIII	AAGCTT	3 cut(s)	1163, 2020, 2343
Hpy166II	GTNNAC	9 cut(s)	145, 585, 688, 945, 1835, 2455, 2637, 2724, 2778
Hpy8I	GTNNAC	9 cut(s)	145, 585, 688, 945, 1835, 2455, 2637, 2724, 2778
Hpy99I	CGWCG	4 cut(s)	362, 562, 682, 919
HpyCH4III	ACNGT	8 cut(s)	111, 562, 682, 1108, 1520, 2150, 2614, 2900
HpyCH4IV	ACGT	3 cut(s)	63, 2077, 2988
HpyF10VI	GCNNNNNNNGC	5 cut(s)	389, 398, 983, 2255, 3148
HpySE526I	ACGT	3 cut(s)	63, 2077, 2988
Hsp92I	GRCGYC	1 cut(s)	1557
HspAI	GCGC	6 cut(s)	133, 392, 1028, 1557, 1714, 3151
KasI	GGCGCC	1 cut(s)	1556
Kpn2I	TCCGGA	1 cut(s)	2503
KroI	GCCGGC	2 cut(s)	509, 1261
KroNI	GCCGGC	2 cut(s)	511, 1263
Ksp22I	TGATCA	4 cut(s)	867, 1011, 2053, 2553
LmnI	GCTCC	8 cut(s)	198, 316, 421, 475, 499, 1606, 1643, 2943
Lsp1109I	GCAGC	4 cut(s)	1062, 1391, 1695, 2121
LweI	GCATC	4 cut(s)	1312, 2176, 2756, 2904
MabI	ACCWGGT	1 cut(s)	2457
MaeI	CTAG	7 cut(s)	1094, 1182, 1701, 2097, 2489, 2532, 2751
MaeII	ACGT	3 cut(s)	63, 2077, 2988
MaeIII	GTNAC	4 cut(s)	709, 1520, 2461, 2689
MfeI	CAATTG	2 cut(s)	1824, 1896
MflI	RGATCY	6 cut(s)	1302, 1669, 1867, 2321, 2565, 2791
MhlI	GDGCHC	3 cut(s)	480, 557, 2726
MlsI	TGGCCA	1 cut(s)	2679
MluNI	TGGCCA	1 cut(s)	2679
Mly113I	GGCGCC	1 cut(s)	1557
MlyI	GAGTC	8 cut(s)	47, 95, 706, 781, 1084, 1354, 2540, 2601
MmeI	TCCRAC	5 cut(s)	93, 340, 399, 1836, 2290
Mox20I	TGGCCA	1 cut(s)	2679
MroI	TCCGGA	1 cut(s)	2503
MroNI	GCCGGC	2 cut(s)	509, 1261
MroXI	GAANNNNTTC	1 cut(s)	2036
MscI	TGGCCA	1 cut(s)	2679
MseI	TTAA	4 cut(s)	2024, 2823, 2928, 3077
MslI	CAYNNNNRTG	2 cut(s)	2049, 2864
Msp20I	TGGCCA	1 cut(s)	2679
MspA1I	CMGCKG	5 cut(s)	891, 1961, 2405, 2762, 3134
MspR9I	CCNGG	5 cut(s)	137, 486, 1188, 2459, 2923
MunI	CAATTG	2 cut(s)	1824, 1896
Mva1269I	GAATGC	5 cut(s)	77, 355, 748, 1063, 1371
MvaI	CCWGG	3 cut(s)	1188, 2459, 2923
MvnI	CGCG	4 cut(s)	99, 242, 308, 671
MwoI	GCNNNNNNNGC	5 cut(s)	389, 398, 983, 2255, 3148
NaeI	GCCGGC	2 cut(s)	511, 1263
NarI	GGCGCC	1 cut(s)	1557
NciI	CCSGG	2 cut(s)	137, 486
NcoI	CCATGG	3 cut(s)	1533, 2223, 2933
NdeI	CATATG	1 cut(s)	1272
NgoMIV	GCCGGC	2 cut(s)	509, 1261
NlaIV	GGNNCC	9 cut(s)	318, 456, 522, 1219, 1558, 1639, 1869, 2473, 2939
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	3 cut(s)	709, 1520, 2689
NspI	RCATGY	1 cut(s)	703
NspV	TTCGAA	2 cut(s)	924, 1448
PagI	TCATGA	1 cut(s)	1690
PaqCI	CACCTGC	2 cut(s)	733, 2200
PasI	CCCWGGG	1 cut(s)	2922
PceI	AGGCCT	5 cut(s)	401, 999, 1186, 2085, 2258
PcsI	WCGNNNNNNNCGW	4 cut(s)	47, 153, 270, 486
PctI	GAATGC	5 cut(s)	77, 355, 748, 1063, 1371
PdiI	GCCGGC	2 cut(s)	511, 1263
PdmI	GAANNNNTTC	1 cut(s)	2036
PfeI	GAWTC	9 cut(s)	363, 412, 757, 1418, 1920, 2431, 2493, 2980, 3128
PinAI	ACCGGT	1 cut(s)	1127
Ple19I	CGATCG	1 cut(s)	357
PleI	GAGTC	8 cut(s)	46, 95, 706, 781, 1084, 1353, 2540, 2600
PluTI	GGCGCC	1 cut(s)	1560
PpsI	GAGTC	8 cut(s)	46, 95, 706, 781, 1084, 1353, 2540, 2600
Ppu21I	YACGTR	1 cut(s)	2989
PpuMI	RGGWCCY	1 cut(s)	1741
Psp124BI	GAGCTC	2 cut(s)	480, 557
Psp5II	RGGWCCY	1 cut(s)	1741
Psp6I	CCWGG	3 cut(s)	1186, 2457, 2921
PspFI	CCCAGC	3 cut(s)	891, 2234, 2476
PspGI	CCWGG	3 cut(s)	1186, 2457, 2921
PspN4I	GGNNCC	9 cut(s)	318, 456, 522, 1219, 1558, 1639, 1869, 2473, 2939
PspPI	GGNCC	6 cut(s)	175, 1654, 1741, 1885, 1994, 2471
PspPPI	RGGWCCY	1 cut(s)	1741
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	2446
PsuI	RGATCY	6 cut(s)	1302, 1669, 1867, 2321, 2565, 2791
PvuI	CGATCG	1 cut(s)	357
PvuII	CAGCTG	3 cut(s)	891, 1961, 2762
RseI	CAYNNNNRTG	2 cut(s)	2049, 2864
SacI	GAGCTC	2 cut(s)	480, 557
SaqAI	TTAA	4 cut(s)	2024, 2823, 2928, 3077
Sau96I	GGNCC	6 cut(s)	175, 1654, 1741, 1885, 1994, 2471
ScaI	AGTACT	1 cut(s)	881
SchI	GAGTC	8 cut(s)	47, 95, 706, 781, 1084, 1354, 2540, 2601
ScrFI	CCNGG	5 cut(s)	137, 486, 1188, 2459, 2923
SduI	GDGCHC	3 cut(s)	480, 557, 2726
SexAI	ACCWGGT	1 cut(s)	2457
SfaNI	GCATC	4 cut(s)	1312, 2176, 2756, 2904
SfcI	CTRYAG	2 cut(s)	1005, 3135
SfoI	GGCGCC	1 cut(s)	1558
SfuI	TTCGAA	2 cut(s)	924, 1448
SinI	GGWCC	6 cut(s)	175, 1654, 1741, 1885, 1994, 2471
SmiMI	CAYNNNNRTG	2 cut(s)	2049, 2864
SmlI	CTYRAG	3 cut(s)	875, 1508, 3003
SmoI	CTYRAG	3 cut(s)	875, 1508, 3003
SseBI	AGGCCT	5 cut(s)	401, 999, 1186, 2085, 2258
SspDI	GGCGCC	1 cut(s)	1556
SspMI	CTAG	7 cut(s)	1094, 1182, 1701, 2097, 2489, 2532, 2751
SstI	GAGCTC	2 cut(s)	480, 557
StuI	AGGCCT	5 cut(s)	401, 999, 1186, 2085, 2258
StyD4I	CCNGG	5 cut(s)	135, 484, 1186, 2457, 2921
StyI	CCWWGG	4 cut(s)	1533, 2108, 2223, 2933
TaaI	ACNGT	8 cut(s)	111, 562, 682, 1108, 1520, 2150, 2614, 2900
TaiI	ACGT	3 cut(s)	66, 2080, 2991
TatI	WGTACW	4 cut(s)	879, 944, 1100, 3110
TauI	GCSGC	8 cut(s)	26, 99, 245, 431, 470, 986, 1261, 2408
TfiI	GAWTC	9 cut(s)	363, 412, 757, 1418, 1920, 2431, 2493, 2980, 3128
Tru1I	TTAA	4 cut(s)	2024, 2823, 2928, 3077
Tru9I	TTAA	4 cut(s)	2024, 2823, 2928, 3077
TscAI	CASTG	4 cut(s)	16, 1014, 1366, 2563
TseFI	GTSAC	3 cut(s)	709, 1520, 2689
TseI	GCWGC	4 cut(s)	1075, 1379, 1683, 2134
Tsp45I	GTSAC	3 cut(s)	709, 1520, 2689
TspGWI	ACGGA	6 cut(s)	50, 162, 746, 1877, 1913, 2944
TspRI	CASTG	4 cut(s)	16, 1014, 1366, 2563
VneI	GTGCAC	1 cut(s)	2722
VpaK11BI	GGWCC	6 cut(s)	175, 1654, 1741, 1885, 1994, 2471
XagI	CCTNNNNNAGG	1 cut(s)	2891
XapI	RAATTY	7 cut(s)	460, 634, 919, 926, 1660, 2036, 2415
XbaI	TCTAGA	1 cut(s)	2096
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1648
XmnI	GAANNNNTTC	1 cut(s)	2036
XspI	CTAG	7 cut(s)	1094, 1182, 1701, 2097, 2489, 2532, 2751
ZrmI	AGTACT	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.