Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001873

Physical Location & Seq

Genomic Coordinates Forward (+)

12846214 .. 12847213

Gene Structure 1000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGTCTTCTACAAAAGAAATTGCTTTTGATCAGCATTTGCAATATGCACTACAAGGTGGAATTGACAATCTTGTGGGTGTTATTGGCCTTACTTTTGGTCCTAGGGGAAGGAATGTCGTATTAGATAAGTGTGGTAGTCCTAAAGTTGTGAATGAAGGAGTCAATTTTGGCAGAGCTATTGAGTTACCACACGACATTGGAACTGTTGGTGAAGCACGAATTAGAGAGGTATTCAGCAAGACCAATGACTTTGAGGGTGACAGAATAACAAATACATTGAAGAGAAGGAGTGAATGCACTAGGGGTACCTATCTGGATTTTGAATCATCAAATGGAAGGGATTTGCTTGGTTGTTGCCAAAAGTGGAGTGAATTTGAACGCCGAATTGCAACCCTTGAGTTTGATCGTGATAAGAAATCCACGGATGTAATGGTCAACTCTGTTTCAAGAAAGAAGTCATTGCTAGTGAAGGGTGCTGTACAAAATTTGCTTGAGAAAAGCACTAAGGTTCAGTTGCATGATGACACTGTTGTAGCGCTGGATGATAGCTCAAAGAATTATATCGTGCAAGCTTTTCGTGAGATGTCAACTAGTGCTTTGAAACCATTGAATGATGCACCTGTTTTGAAACTCGCTAATATTGGGATTGCAATGAGCATAACTGGAATTGAGAACATATCCATCATAAGGGAATGTGCTGCTGCTTTCAAACAAGTTTCCACATTCAAATTTTTTAGCCTTGTGGACAAGGCTAATTTTCAAGGGGGAAGTATTGTTATGAACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

264

Amino Acids

29.05

Weight (kDa)

8.22

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	118 - 204	4.6e-11	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07670 AT1G07670 AT1G07810
fragaria_vesca	FvH4_3g34570 FvH4_3g34570 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760
malus_domestica	MD04G1038900.v1.1 MD04G1116400.v1.1 MD11G1117700.v1.1 MD12G1132100.v1.1 MD13G1142700.v1.1
prunus_persica	Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1
pyrus_communis	pycom03g12390 pycom03g12400 pycom04g10640 pycom07g10780 pycom11g09870 pycom12g12810 pycom16g18850
rosa_chinensis	RchiOBHm_Chr3g0467981 RchiOBHm_Chr5g0062231
rosa_laevigata	RLG00000024462 RLG00000035545
rosa_multiflora	Rmu_co8021382.1_g000001 Rmu_sc0001793.1_g000060 Rmu_ssc0000409.1_g000035
rosa_roxburghii	Rroxscaffold_1G00018460 Rroxscaffold_6G00413240
rosa_rugosa	Rorug03G0090700 Rorug03G0090800 Rorug05G0347300
rosa_samantha	Rh3AG139600 Rh3BG161100 Rh3CG161000 Rh3DG161500 Rh5AG407900 Rh5BG421600 Rh5CG445600 Rh5DG436600
rosa_wichuraiana	Rw3G013200 Rw5G038440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AcsI	RAATTY	3 cut(s)	374, 487, 731
AfaI	GTAC	2 cut(s)	310, 483
AfeI	AGCGCT	1 cut(s)	540
AfiI	CCNNNNNNNGG	1 cut(s)	690
AhlI	ACTAGT	1 cut(s)	593
AluBI	AGCT	3 cut(s)	179, 552, 575
AluI	AGCT	3 cut(s)	179, 552, 575
Aor51HI	AGCGCT	1 cut(s)	540
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	701, 704
ApoI	RAATTY	3 cut(s)	374, 487, 731
Asp718I	GGTACC	1 cut(s)	308
AspA2I	CCTAGG	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	224, 272
AvaII	GGWCC	1 cut(s)	101
AvrII	CCTAGG	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	688, 691
BccI	CCATC	1 cut(s)	692
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BclI	TGATCA	1 cut(s)	31
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	4 cut(s)	105, 303, 467, 594
BfoI	RGCGCY	1 cut(s)	542
BisI	GCNGC	2 cut(s)	702, 705
BlnI	CCTAGG	1 cut(s)	104
BlsI	GCNGC	2 cut(s)	703, 706
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	310
BmsI	GCATC	1 cut(s)	607
BpuEI	CTTGAG	2 cut(s)	419, 515
BsaJI	CCNNGG	2 cut(s)	104, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	690
Bse1I	ACTGG	1 cut(s)	670
Bse3DI	GCAATG	2 cut(s)	461, 660
BseDI	CCNNGG	2 cut(s)	104, 423
BseGI	GGATG	2 cut(s)	433, 550
BseLI	CCNNNNNNNGG	1 cut(s)	690
BseMI	GCAATG	2 cut(s)	461, 660
BseNI	ACTGG	1 cut(s)	670
BseXI	GCAGC	2 cut(s)	688, 691
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	690
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	481
Bsp143I	GATC	2 cut(s)	31, 406
BspANI	GGCC	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	2 cut(s)	461, 660
BsrGI	TGTACA	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	670
BssECI	CCNNGG	2 cut(s)	104, 423
BssMI	GATC	2 cut(s)	31, 406
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	208, 532
Bst6I	CTCTTC	1 cut(s)	278
BstAUI	TGTACA	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	1 cut(s)	507
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	433, 550
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	34, 409
BstMBI	GATC	2 cut(s)	31, 406
BstV1I	GCAGC	2 cut(s)	688, 691
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	433, 550
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	573
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	309, 482
CviAII	CATG	1 cut(s)	521
CviJI	RGCY	6 cut(s)	90, 179, 552, 575, 741, 755
CviKI_1	RGCY	6 cut(s)	90, 179, 552, 575, 741, 755
CviQI	GTAC	2 cut(s)	309, 482
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	2 cut(s)	33, 408
DpnII	GATC	2 cut(s)	31, 406
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	101
Eco47III	AGCGCT	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	1 cut(s)	524
FaiI	YATR	8 cut(s)	48, 522, 564, 662, 680, 689, 782, 790
FatI	CATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	702, 705
FokI	GGATG	2 cut(s)	440, 557
Fsp4HI	GCNGC	2 cut(s)	702, 705
FspBI	CTAG	4 cut(s)	105, 303, 467, 594
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	2 cut(s)	702, 705
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	1 cut(s)	524
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	2 cut(s)	439, 591
HindII	GTYRAC	2 cut(s)	439, 591
HindIII	AAGCTT	1 cut(s)	573
HinfI	GANTC	3 cut(s)	5, 162, 326
HphI	GGTGA	2 cut(s)	224, 272
Hpy166II	GTNNAC	3 cut(s)	439, 591, 748
Hpy188III	TCNNGA	4 cut(s)	317, 410, 450, 581
Hpy8I	GTNNAC	3 cut(s)	439, 591, 748
HpyAV	CCTTC	5 cut(s)	105, 152, 282, 333, 466
HpyCH4III	ACNGT	2 cut(s)	208, 532
HpyCH4V	TGCA	8 cut(s)	43, 50, 300, 392, 520, 571, 620, 653
HpyF3I	CTNAG	1 cut(s)	507
Hsp92II	CATG	1 cut(s)	524
HspAI	GCGC	1 cut(s)	539
KpnI	GGTACC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 406
LpnPI	CCDG	4 cut(s)	302, 527, 636, 651
Lsp1109I	GCAGC	2 cut(s)	688, 691
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	4 cut(s)	105, 303, 467, 594
MaeIII	GTNAC	2 cut(s)	186, 260
MalI	GATC	2 cut(s)	33, 408
MboI	GATC	2 cut(s)	31, 406
MboII	GAAGA	1 cut(s)	295
MlyI	GAGTC	2 cut(s)	14, 171
MnlI	CCTC	2 cut(s)	223, 250
Mva1269I	GAATGC	1 cut(s)	302
NdeII	GATC	2 cut(s)	31, 406
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	260
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	703, 706
PleI	GAGTC	2 cut(s)	13, 170
PpsI	GAGTC	2 cut(s)	13, 170
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	101
RsaI	GTAC	2 cut(s)	310, 483
RsaNI	GTAC	2 cut(s)	309, 482
SatI	GCNGC	2 cut(s)	702, 705
Sau3AI	GATC	2 cut(s)	31, 406
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	2 cut(s)	14, 171
SetI	ASST	8 cut(s)	61, 181, 234, 314, 513, 554, 577, 625
SfaNI	GCATC	1 cut(s)	607
SinI	GGWCC	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	398, 494
SmoI	CTYRAG	2 cut(s)	398, 494
SpeI	ACTAGT	1 cut(s)	593
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	4 cut(s)	105, 303, 467, 594
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	2 cut(s)	208, 532
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	326
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	2 cut(s)	701, 704
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	3 cut(s)	374, 487, 731
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmaJI	CCTAGG	1 cut(s)	104
XspI	CTAG	4 cut(s)	105, 303, 467, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.