pycom07g10780

phenylalanine-tRNA ligase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
10993885 .. 10996629
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g10780.5

Sequence Viewer

Length: 1947 bp
ATGGTATCATCCTTCTCGAATCCTGGTTTCCCTCCTGTGCACACTCGCCAAGCAGCTGCCTCTCGTTTCTCTTCCCTAGAAGATTGTGTTGCTTCCTTGGAAGTTATCATAGCCTCTTTACCTTCCTTCATCGCTAATGTGATCGACGCGGCCTTCGACAAGACCTTTGACAAAGCCTTAGCCAAGGCCTTCGATGCCTCTTTTGAAACATTTCGTGGGGAAATCCCAATTTGTGCTGCAAAAGCCCAATTGCAGCTTATTCCGTTTCCAGTCCAAGCTCCACCACTGCTTTCATCTTCACCATTGTTGCGAGCACTGGCAACTTCGGCCGTCAAGCTACACTTGAAGGACTCTGCTGCAGCTACAATTTCTCTTCCGGCATCGAAGACAGTGATTCATGCTTCTACGATGATTATTGCTCAATGGCTAATCCTTACGCATTCGTTCCTCGATACCACAAAAACTGGATCTGAGGTACTGCTTTTGTTTGGTGTAATTGCATGTTATATTGGTCATAATGCGATCATATATCATGCTTTCTTGAATGCTAAGTATGGCTGGGTTAATTGGTATTTTGTGGGAAAGTTTGTGAAAAAGGATTGGTGTGCAATTAAACAAATGGTTAAAGAAGTTTCTTACGAAGAAAAGGCCAATGTATCCTATGTTGAGATCAAGATTATTGAAAGCCAAGGTTTAGATGAAAAATCTTCCCTTGTAGACATTGTGATGTTTCGGTTAGCTAAAAGTGTGGTTGGCATAAATCAAACTACACGCTCTGTTGGTTTGGATGATATTGAGTTAGATGCACAAGGTGTTTTGAGTGAGGATCCTAGCAGCAGAGTACCCATAGAAGAAAGCCTTGTTAAAGTGCCTAGTAACTTGGGTTATGATGCTGGTTCTAATGAAAGTCCAAATTTTGTTAAAGCCCTTTTCGACATTGAACTTGTTAGCATGGTGCACTGCATAGAAAGTGGGGAAAATGTCTCAAAGTCACTTCAATCTTTTGAAGGCCACATATCACATGAGGTGAAACATTTACAATGTCTGCATTTTACAACTGAGACCTCCTCAGTGCTTTCAAGTTGTGTGAGGCAACTAACATTTATTTTGTGCACTGGTAGGAATCCTTCAGCCTTCATTCCTACATACTCAACATTACTTATTGGGACTGAACCTCACTCCAAGAGAGGCAAGGTTACCTGGAAAGTTCAGTCGGATGTCCTTCATGGAGCTATCATAAATGCGAATCATGTTCACGGGTTTAGACCATCCCTGTCCAGTGGGTCGTATCCGTGCAACTTCACCAACATGCTTCTCCCAAACCCGGTGAATTATAGGCAATTAAGGCTTCGTTCTATTATGAAGTCCTCTGCAAAAGAAATTGCTTTTGATCAGCATTTTCAACATGCACTACAAGGTGGAATTGACAAGCTTTTGGGTGTTATTGGCCTTACTTTTGGTTTTAAGGGAAGGAATTTTGTACTAGATGACTGTGGTAGTCCTAAAGTTATGAGTGAGGGAGTCAAATTTGGCAGAGCTATTGAATTACCACATGACATTGGAACTGTTGGTGAAGCTCAAATTAGAGAGGTATTTAGCAAGACCAATGACTTTAAGGGTGACAAAACAACAAATACATTGAAGAGAGAGAGTGAATGCACTAGGGGTACCTATTTGGATTTAGCATGCTCTCTCGAAGGTCACTTGGAAAGCAATTTTGGTGCTTTGGCTATTGATTTACATGTTGATTTGTCTCTATTTTTCACTAGAAAATTTGATTTTTGGCCTATTTGGGATCTGGGAGATATATCAGCTAAAGCTGTCAAGTTGATACTTTATTTTCAGTACAAGGACATCAAGCAAATGGGTGCTTTTGTGAATCTATTTGGGGAATCATCAAATGGAAGGGATTTGCTTGGTTGTTGCCAGAAGTGGAGTGAATATTAA

Protein Analysis

649

Amino Acids

71.42

Weight (kDa)

6.58

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1667
AccB1I GGYRCC 1 cut(s) 1667
AccI GTMKAC 1 cut(s) 717
AccII CGCG 1 cut(s) 149
AciI CCGC 1 cut(s) 149
AclWI GGATC 4 cut(s) 475, 821, 834, 1803
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 4 cut(s) 913, 1474, 1526, 1772
AcuI CTGAAG 1 cut(s) 1113
AdeI CACNNNGTG 1 cut(s) 812
AfaI GTAC 5 cut(s) 477, 843, 1482, 1669, 1847
AfiI CCNNNNNNNGG 1 cut(s) 1324
AflIII ACRYGT 1 cut(s) 1741
AjnI CCWGG 2 cut(s) 22, 1199
AjuI GAANNNNNNNTTGG 2 cut(s) 1701, 1733
Alw21I GWGCWC 4 cut(s) 42, 316, 960, 1115
Alw26I GTCTC 3 cut(s) 988, 1055, 1758
Alw44I GTGCAC 3 cut(s) 38, 956, 1111
AlwI GGATC 4 cut(s) 475, 821, 834, 1803
AoxI GGCC 7 cut(s) 150, 186, 327, 648, 1009, 1447, 1784
ApaLI GTGCAC 3 cut(s) 38, 956, 1111
ApeKI GCWGC 7 cut(s) 53, 56, 236, 253, 356, 359, 834
ApoI RAATTY 4 cut(s) 913, 1474, 1526, 1772
ArsI GACNNNNNNTTYG 4 cut(s) 137, 149, 169, 181
Asp700I GAANNNNTTC 1 cut(s) 210
Asp718I GGTACC 1 cut(s) 1667
AsuC2I CCSGG 1 cut(s) 1325
AsuHPI GGTGA 6 cut(s) 291, 1039, 1294, 1339, 1583, 1631
BaeGI GKGCMC 3 cut(s) 42, 960, 1115
BamHI GGATCC 1 cut(s) 826
BanI GGYRCC 1 cut(s) 1667
BarI GAAGNNNNNNTAC 2 cut(s) 1111, 1143
BbsI GAAGAC 1 cut(s) 392
Bbv12I GWGCWC 4 cut(s) 42, 316, 960, 1115
BbvI GCAGC 7 cut(s) 43, 65, 223, 265, 343, 371, 846
BccI CCATC 1 cut(s) 1276
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 2 cut(s) 24, 1201
BciVI GTATCC 2 cut(s) 667, 1299
BclI TGATCA 1 cut(s) 1390
BcnI CCSGG 1 cut(s) 1325
BcoDI GTCTC 3 cut(s) 988, 1055, 1758
BfaI CTAG 6 cut(s) 77, 831, 873, 1484, 1662, 1767
BfmI CTRYAG 1 cut(s) 357
BfuI GTATCC 2 cut(s) 667, 1299
BisI GCNGC 8 cut(s) 54, 57, 150, 237, 254, 357, 360, 835
BlsI GCNGC 8 cut(s) 55, 58, 151, 238, 255, 358, 361, 836
Bme1390I CCNGG 3 cut(s) 24, 1201, 1325
BmiI GGNNCC 2 cut(s) 828, 1669
BmrFI CCNGG 3 cut(s) 24, 1201, 1325
BmsI GCATC 4 cut(s) 184, 389, 793, 880
BpiI GAAGAC 1 cut(s) 392
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
Bpu10I CCTNAGC 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 1325
BsaI GGTCTC 1 cut(s) 1055
BsaJI CCNNGG 3 cut(s) 96, 183, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 1324
Bse1I ACTGG 5 cut(s) 269, 321, 469, 1120, 1278
BseBI CCWGG 2 cut(s) 24, 1201
BseDI CCNNGG 3 cut(s) 96, 183, 688
BseGI GGATG 4 cut(s) 8, 793, 1222, 1268
BseLI CCNNNNNNNGG 1 cut(s) 1324
BseMII CTCAG 3 cut(s) 462, 1050, 1083
BseNI ACTGG 5 cut(s) 269, 321, 469, 1120, 1278
BseRI GAGGAG 1 cut(s) 1057
BseSI GKGCMC 3 cut(s) 42, 960, 1115
BseX3I CGGCCG 1 cut(s) 327
BseXI GCAGC 7 cut(s) 43, 65, 223, 265, 343, 371, 846
BseYI CCCAGC 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 7 cut(s) 152, 188, 329, 650, 1011, 1449, 1786
BshNI GGYRCC 1 cut(s) 1667
BsiEI CGRYCG 1 cut(s) 330
BsiHKAI GWGCWC 4 cut(s) 42, 316, 960, 1115
BsiSI CCGG 2 cut(s) 377, 1325
BslFI GGGAC 1 cut(s) 1180
BslI CCNNNNNNNGG 1 cut(s) 1324
BsmAI GTCTC 3 cut(s) 988, 1055, 1758
BsmFI GGGAC 1 cut(s) 1180
BsmI GAATGC 3 cut(s) 439, 550, 1661
BsnI GGCC 7 cut(s) 152, 188, 329, 650, 1011, 1449, 1786
Bso31I GGTCTC 1 cut(s) 1055
Bsp1286I GDGCHC 4 cut(s) 42, 316, 960, 1115
Bsp143I GATC 7 cut(s) 141, 467, 522, 669, 826, 1390, 1795
BspACI CCGC 1 cut(s) 149
BspANI GGCC 7 cut(s) 152, 188, 329, 650, 1011, 1449, 1786
BspCNI CTCAG 3 cut(s) 463, 1051, 1082
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 828, 1669
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 4 cut(s) 475, 821, 834, 1803
BspT107I GGYRCC 1 cut(s) 1667
BspTNI GGTCTC 1 cut(s) 1055
BsrI ACTGG 5 cut(s) 269, 321, 469, 1120, 1278
BssECI CCNNGG 3 cut(s) 96, 183, 688
BssMI GATC 7 cut(s) 141, 467, 522, 669, 826, 1390, 1795
BssT1I CCWWGG 3 cut(s) 96, 183, 688
Bst2UI CCWGG 2 cut(s) 24, 1201
Bst4CI ACNGT 3 cut(s) 391, 1493, 1567
Bst6I CTCTTC 3 cut(s) 76, 378, 1637
BstC8I GCNNGC 2 cut(s) 312, 1687
BstDEI CTNAG 5 cut(s) 178, 471, 549, 1059, 1069
BstEII GGTNACC 1 cut(s) 1195
BstF5I GGATG 4 cut(s) 8, 793, 1222, 1268
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 7 cut(s) 144, 470, 525, 672, 829, 1393, 1798
BstMAI GTCTC 3 cut(s) 988, 1055, 1758
BstMBI GATC 7 cut(s) 141, 467, 522, 669, 826, 1390, 1795
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 4 cut(s) 194, 242, 326, 1345
BstNI CCWGG 2 cut(s) 24, 1201
BstNSI RCATGY 5 cut(s) 504, 1312, 1409, 1689, 1745
BstPI GGTNACC 1 cut(s) 1195
BstSCI CCNGG 3 cut(s) 22, 1199, 1323
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 3 cut(s) 42, 960, 1115
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 7 cut(s) 43, 65, 223, 265, 343, 371, 846
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 3 cut(s) 467, 826, 1795
BstYI RGATCY 3 cut(s) 467, 826, 1795
BstZI CGGCCG 1 cut(s) 327
BsuI GTATCC 2 cut(s) 667, 1299
BsuRI GGCC 7 cut(s) 152, 188, 329, 650, 1011, 1449, 1786
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 4 cut(s) 8, 793, 1222, 1268
BtsI GCAGTG 2 cut(s) 284, 958
BtsIMutI CAGTG 7 cut(s) 284, 314, 396, 958, 1077, 1113, 1285
Cac8I GCNNGC 2 cut(s) 312, 1687
CseI GACGC 1 cut(s) 155
Csp6I GTAC 5 cut(s) 476, 842, 1481, 1668, 1846
CviQI GTAC 5 cut(s) 476, 842, 1481, 1668, 1846
DdeI CTNAG 5 cut(s) 178, 471, 549, 1059, 1069
DpnI GATC 7 cut(s) 143, 469, 524, 671, 828, 1392, 1797
DpnII GATC 7 cut(s) 141, 467, 522, 669, 826, 1390, 1795
DraIII CACNNNGTG 1 cut(s) 812
EaeI YGGCCR 1 cut(s) 327
EagI CGGCCG 1 cut(s) 327
Eam1104I CTCTTC 3 cut(s) 76, 378, 1637
EarI CTCTTC 3 cut(s) 76, 378, 1637
EclXI CGGCCG 1 cut(s) 327
Eco130I CCWWGG 3 cut(s) 96, 183, 688
Eco147I AGGCCT 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 1055
Eco52I CGGCCG 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 1113
Eco91I GGTNACC 1 cut(s) 1195
EcoO65I GGTNACC 1 cut(s) 1195
EcoRII CCWGG 2 cut(s) 22, 1199
EcoT14I CCWWGG 3 cut(s) 96, 183, 688
ErhI CCWWGG 3 cut(s) 96, 183, 688
FalI AAGNNNNNCTT 4 cut(s) 326, 358, 843, 875
FaqI GGGAC 1 cut(s) 1180
FbaI TGATCA 1 cut(s) 1390
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 8 cut(s) 54, 57, 150, 237, 254, 357, 360, 835
FokI GGATG 3 cut(s) 800, 1229, 1255
Fsp4HI GCNGC 8 cut(s) 54, 57, 150, 237, 254, 357, 360, 835
FspBI CTAG 6 cut(s) 77, 831, 873, 1484, 1662, 1767
GluI GCNGC 8 cut(s) 54, 57, 150, 237, 254, 357, 360, 835
GsaI CCCAGC 1 cut(s) 562
HaeIII GGCC 7 cut(s) 152, 188, 329, 650, 1011, 1449, 1786
HapII CCGG 2 cut(s) 377, 1325
HgaI GACGC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 1430
HinfI GANTC 8 cut(s) 19, 350, 394, 1123, 1246, 1521, 1879, 1892
HpaII CCGG 2 cut(s) 377, 1325
HphI GGTGA 6 cut(s) 291, 1039, 1294, 1339, 1583, 1631
Hpy166II GTNNAC 5 cut(s) 40, 718, 958, 1113, 1255
Hpy188I TCNGA 2 cut(s) 472, 1216
Hpy188III TCNNGA 4 cut(s) 16, 541, 673, 1694
Hpy8I GTNNAC 5 cut(s) 40, 718, 958, 1113, 1255
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 3 cut(s) 391, 1493, 1567
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 242, 326, 1345
HpyF3I CTNAG 5 cut(s) 178, 471, 549, 1059, 1069
KpnI GGTACC 1 cut(s) 1671
Ksp22I TGATCA 1 cut(s) 1390
Kzo9I GATC 7 cut(s) 141, 467, 522, 669, 826, 1390, 1795
LmnI GCTCC 2 cut(s) 283, 1229
Lsp1109I GCAGC 7 cut(s) 43, 65, 223, 265, 343, 371, 846
LweI GCATC 4 cut(s) 184, 389, 793, 880
MaeI CTAG 6 cut(s) 77, 831, 873, 1484, 1662, 1767
MaeIII GTNAC 5 cut(s) 875, 990, 1195, 1619, 1700
MalI GATC 7 cut(s) 143, 469, 524, 671, 828, 1392, 1797
MboI GATC 7 cut(s) 141, 467, 522, 669, 826, 1390, 1795
MboII GAAGA 9 cut(s) 63, 92, 288, 365, 397, 653, 699, 863, 1654
MfeI CAATTG 1 cut(s) 248
MflI RGATCY 3 cut(s) 467, 826, 1795
MhlI GDGCHC 4 cut(s) 42, 316, 960, 1115
MlyI GAGTC 2 cut(s) 344, 1530
MmeI TCCRAC 1 cut(s) 1194
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 9 cut(s) 564, 612, 624, 864, 921, 1343, 1464, 1614, 1945
MslI CAYNNNNRTG 2 cut(s) 725, 1307
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 2 cut(s) 377, 1325
MspR9I CCNGG 3 cut(s) 24, 1201, 1325
MunI CAATTG 1 cut(s) 248
Mva1269I GAATGC 3 cut(s) 439, 550, 1661
MvaI CCWGG 2 cut(s) 24, 1201
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 194, 242, 326, 1345
NciI CCSGG 1 cut(s) 1325
NdeII GATC 7 cut(s) 141, 467, 522, 669, 826, 1390, 1795
NlaIV GGNNCC 2 cut(s) 828, 1669
NmuCI GTSAC 3 cut(s) 990, 1619, 1700
NspI RCATGY 5 cut(s) 504, 1312, 1409, 1689, 1745
PaeI GCATGC 1 cut(s) 1689
PceI AGGCCT 1 cut(s) 188
PciI ACATGT 1 cut(s) 1741
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 3 cut(s) 439, 550, 1661
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 6 cut(s) 19, 394, 1123, 1246, 1879, 1892
PkrI GCNGC 8 cut(s) 55, 58, 151, 238, 255, 358, 361, 836
PleI GAGTC 2 cut(s) 344, 1529
PpsI GAGTC 2 cut(s) 344, 1529
PscI ACATGT 1 cut(s) 1741
Psp6I CCWGG 2 cut(s) 22, 1199
PspEI GGTNACC 1 cut(s) 1195
PspFI CCCAGC 1 cut(s) 558
PspGI CCWGG 2 cut(s) 22, 1199
PspN4I GGNNCC 2 cut(s) 828, 1669
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 3 cut(s) 467, 826, 1795
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 5 cut(s) 477, 843, 1482, 1669, 1847
RsaNI GTAC 5 cut(s) 476, 842, 1481, 1668, 1846
RseI CAYNNNNRTG 2 cut(s) 725, 1307
SaqAI TTAA 9 cut(s) 564, 612, 624, 864, 921, 1343, 1464, 1614, 1945
SatI GCNGC 8 cut(s) 54, 57, 150, 237, 254, 357, 360, 835
Sau3AI GATC 7 cut(s) 141, 467, 522, 669, 826, 1390, 1795
SchI GAGTC 2 cut(s) 344, 1530
ScrFI CCNGG 3 cut(s) 24, 1201, 1325
SduI GDGCHC 4 cut(s) 42, 316, 960, 1115
SfaNI GCATC 4 cut(s) 184, 389, 793, 880
SfcI CTRYAG 1 cut(s) 357
SmiMI CAYNNNNRTG 2 cut(s) 725, 1307
SphI GCATGC 1 cut(s) 1689
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 1 cut(s) 149
SspI AATATT 1 cut(s) 1943
SspMI CTAG 6 cut(s) 77, 831, 873, 1484, 1662, 1767
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 3 cut(s) 22, 1199, 1323
StyI CCWWGG 3 cut(s) 96, 183, 688
TaaI ACNGT 3 cut(s) 391, 1493, 1567
TaqI TCGA 8 cut(s) 17, 144, 156, 192, 383, 450, 933, 1695
TatI WGTACW 2 cut(s) 1480, 1845
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 6 cut(s) 19, 394, 1123, 1246, 1879, 1892
Tru1I TTAA 9 cut(s) 564, 612, 624, 864, 921, 1343, 1464, 1614, 1945
Tru9I TTAA 9 cut(s) 564, 612, 624, 864, 921, 1343, 1464, 1614, 1945
TscAI CASTG 7 cut(s) 291, 321, 396, 965, 1077, 1120, 1285
TseFI GTSAC 3 cut(s) 990, 1619, 1700
TseI GCWGC 7 cut(s) 53, 56, 236, 253, 356, 359, 834
Tsp45I GTSAC 3 cut(s) 990, 1619, 1700
TspDTI ATGAA 8 cut(s) 118, 282, 386, 714, 918, 1126, 1214, 1376
TspGWI ACGGA 2 cut(s) 252, 1281
TspRI CASTG 7 cut(s) 291, 321, 396, 965, 1077, 1120, 1285
VneI GTGCAC 3 cut(s) 38, 956, 1111
XapI RAATTY 4 cut(s) 913, 1474, 1526, 1772
XceI RCATGY 5 cut(s) 504, 1312, 1409, 1689, 1745
XmiI GTMKAC 1 cut(s) 717
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 6 cut(s) 77, 831, 873, 1484, 1662, 1767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.