Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001873

Physical Location & Seq

Genomic Coordinates Forward (+)

13922564 .. 13928499

Gene Structure 5936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG161100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2451 bp

ATGGGGAAAGGAGGTGAGGATTTCGGTAAGCGAGAGAAGGCGGCGGGGCCTACGACGTCTGCCGATCGCGATGCGTTTCCGGCGTGGAGTAAGGAGATTCATGAGTGCGAGAAGCACTTCGGCGTGAGCCGGCAGTTAGGGCTGACGTCGGCGGAGGTGGCGAAGCGGCGGGAGGAGTACGGGTGGAACGAGTTGGAGAAGCACGAGGGGCAGTCGATTTGGAGTCTGGTGCTCGACCAGTTCAACGATACTCTGGTGCGGATCCTGCTCGTCGCGGCGGTCGTCTCGTTTGTGCTGGCGTGGTTGGACGGGGAGGAAGGCGGTGAGAAGGAGATCACGGCGTTTGTGGAGCCGTTGGTGATCTTTTTGATTCTGATTGTGAACGCGATTGTTGGGGTTTGGCAGGAGAGCAATGCCGAGAAGGCGCTGGAGGCGCTTAAGGAGATTCAGTCGGAGCAGGCGACTGTGATTCGGAATGGGATTAAGGTTCCGAATTTGCCGGCGAAGGAGCTTGTTCCCGGAGATATTGTGGAGCTTAAGGTTGGGGATAAGGTTCCGGCTGATATGCGTGTAGTGCAGTTGATTAGCTCGACCTTGAGGGTTGAGCAGGGTTCATTGACTGGAGAGAGTGAGGCTGTGAATAAGACTAACAAGCCGGTTCCGGAGGATGCTGATATTCAGGGGAAGTGGTCTATGGTGTTTGCCGGGACGACTATTGTGAATGGGAATTGCATTTGCTTGGTTGCCCAGACCGGAATGGCCACCGAGATTGGGAAGGTGCATATGCAAATTCATGTGGCTTCACAGAGTGAGGAAGACACTCCGTTGAAGAAGAAGCTTAATGAGTTTGGGGAGATGCTCACTATGATAATTGGAGTGATTTGTGCATTGGTGTGGCTCATCAATGTCAAGTACTTCCTCACTTGGGATTATGTTGATGGGATGCCGAGGAACTTCAAGTTTTCATTTGAGAAGTGCACTTATTACTTCGAGATTGCAGTGGCACTGGCTGTGGCTGCTATTCCTGAAGGTTTGCCGGCAGTCATCACTACCTGCTTGGCACTTGGTACCCGCAAAATGGCACAGAAGAATGCCTTGGTTAGAAAGCTTCCCAGTGTTGAAACTCTGGGTTGTACCACAGTCATTTGTTCTGACAAAACAGGGACCTTGACTACGAACCAAATGGCAGTTTCCAGGCTTGTAGCTTTGGGTCCTAGTCCAACTATAATACGGAAGTTTAAGGTGGATGGGACTACTTACAATCCAGCAGATGGCAAAATTTATGACTGGCCAAGTGGACGTATGGATACTAATCTTCAAACGATTGCAAAGGTAGCTGCTGTCTGTAATGATGCTGGTATTACCCAATCAGAACAGAAGTATGTTGCCCATGGAATGCCTACCGAGGCAGCTCTTAAGGTTTTAGTTGAGAAGATGGGGCTTCCTGAAGCATCTCGAGGTGTGGGATCAAGTAAAACTGATTTACTAGGTTGTTGCAAGCACTGGAATGAATCTGAGCGCCGAGTTGCAACTCTTGAGTTTGATCGTGATAGGAAATCTATGGGTGTCATTGCCACCTCCCGTTCGGGGAAAAATTCTTTGCTAGTGAAGGGTGCTGTAGAAAATGTGTTGGAGAGAAGCACTCAGGTTCAGTTGCTTGATGGAACTGTTGTACCACTAGACAATAACTCAAAGAACTACATCTTACAAGCTCTTAATGAGATGTCATCTGATGCACTACGTTGTCTGGGATTTGCATATAAAGATGACTTGGCTGACTTTGAGTCCTATGATGGTGATGAGCATCCAGCTCACAAGCAATTACTTGATCCATCCAATTATTCATCAATAGAGAGCGAACTTGTTTTTGTTGGCTTGGTTGGACTGAGGGATCCACCAAGAGAGGAGGTTTTTGATGCAATTGAAGATTGCCGTGCGGCAGGAATTCGTGTTATGGTAATTACTGGAGATAATAAGAACACAGCAGAAGCTATATGTCGTGAAATAGGTGTTTTTGGTACTCATGAAGACATAAGTGCAAGAAGCATAACAGGAAGAGAGTTTATGAATCTACCTGATCAGAAAGCCTTTCTGAGACAAGGTGGTGGGCTGCTCTTTTCAAGGGCTGAACCAAGGCACAAACAAGAGATTGTGAGGTTGCTGAAAGATGAAGGTGAGGTGGTTGCCATGACTGGTGATGGAGTAAATGATGCACCTGCGTTGAAACTTGCTGATATTGGAATTGCAATGGGCATTGCTGGAACCGAGGTTGCAAAGGAAGCTTCCGACATGGTTTTGGCAGATGATAATTTCAGCACAATTGTTGCTGCTGTTGGTGAGGGCAGATCTATCTACAACAACATGAAGGCCTTTATCAGGTTTGTATTATATCTTCAATTTTTAACTTTGGAGAGTAGTGTCCCAATAATTAATAAAATCAATCTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

816

Amino Acids

89.13

Weight (kDa)

5.15

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	29 - 96	2.1e-21	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	149 - 261	2.5e-23	P-type ATPase actuator domain
Cation_ATPase	PF13246	439 - 636	1.3e-42	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	623 - 745	2.7e-15	haloacid dehalogenase-like hydrolase
HAD	PF12710	629 - 742	9.9e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07670 AT1G07670 AT1G07810
fragaria_vesca	FvH4_3g34570 FvH4_3g34570 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760
malus_domestica	MD04G1038900.v1.1 MD04G1116400.v1.1 MD11G1117700.v1.1 MD12G1132100.v1.1 MD13G1142700.v1.1
prunus_persica	Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1
pyrus_communis	pycom03g12390 pycom03g12400 pycom04g10640 pycom07g10780 pycom11g09870 pycom12g12810 pycom16g18850
rosa_chinensis	RchiOBHm_Chr3g0467981 RchiOBHm_Chr5g0062231
rosa_laevigata	RLG00000024462 RLG00000035545
rosa_multiflora	Rmu_co8021382.1_g000001 Rmu_sc0001793.1_g000060 Rmu_ssc0000409.1_g000035
rosa_roxburghii	Rroxscaffold_1G00018460 Rroxscaffold_6G00413240
rosa_rugosa	Rorug03G0090700 Rorug03G0090800 Rorug05G0347300
rosa_samantha	Rh3AG139600 Rh3BG161100 Rh3CG161000 Rh3DG161500 Rh5AG407900 Rh5BG421600 Rh5CG445600 Rh5DG436600
rosa_wichuraiana	Rw3G013200 Rw5G038440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2224
AatII	GACGTC	2 cut(s)	59, 149
Acc36I	ACCTGC	2 cut(s)	1061, 2224
Acc65I	GGTACC	1 cut(s)	1067
AccB1I	GGYRCC	1 cut(s)	1067
AccB7I	CCANNNNNTGG	1 cut(s)	1271
AccII	CGCG	3 cut(s)	69, 275, 386
AccIII	TCCGGA	1 cut(s)	661
AclWI	GGATC	6 cut(s)	256, 269, 1474, 1823, 1886, 1899
AcoI	YGGCCR	2 cut(s)	759, 1289
AcsI	RAATTY	5 cut(s)	493, 789, 1278, 1594, 1944
AcuI	CTGAAG	2 cut(s)	1047, 1467
AcyI	GRCGYC	2 cut(s)	56, 146
AdeI	CACNNNGTG	1 cut(s)	809
AfaI	GTAC	6 cut(s)	179, 914, 1069, 1135, 1674, 2020
AfiI	CCNNNNNNNGG	6 cut(s)	771, 925, 1078, 1271, 1587, 2376
AflII	CTTAAG	3 cut(s)	437, 536, 1415
AgsI	TTSAA	9 cut(s)	244, 829, 958, 1121, 1319, 1925, 2121, 2224, 2396
AhdI	GACNNNNNGTC	1 cut(s)	1783
AjnI	CCWGG	1 cut(s)	1193
AjuI	GAANNNNNNNTTGG	2 cut(s)	1079, 1111
Alw21I	GWGCWC	2 cut(s)	234, 980
Alw26I	GTCTC	2 cut(s)	289, 2089
Alw44I	GTGCAC	1 cut(s)	976
AlwI	GGATC	6 cut(s)	256, 269, 1474, 1823, 1886, 1899
Ama87I	CYCGRG	2 cut(s)	1455, 2444
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	4 cut(s)	47, 759, 1289, 2367
ApaLI	GTGCAC	1 cut(s)	976
ApeKI	GCWGC	5 cut(s)	1016, 1337, 1409, 2110, 2327
ApoI	RAATTY	5 cut(s)	493, 789, 1278, 1594, 1944
AseI	ATTAAT	1 cut(s)	2430
Asp700I	GAANNNNTTC	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	1067
AspLEI	GCGC	3 cut(s)	427, 436, 1521
AspS9I	GGNCC	3 cut(s)	47, 1164, 1211
AsuC2I	CCSGG	2 cut(s)	519, 706
AsuHPI	GGTGA	7 cut(s)	26, 335, 370, 1808, 2186, 2207, 2348
AvaI	CYCGRG	2 cut(s)	1455, 2444
AvaII	GGWCC	2 cut(s)	1164, 1211
BaeGI	GKGCMC	1 cut(s)	980
BaeI	ACNNNNGTAYC	4 cut(s)	240, 273, 1656, 1689
BalI	TGGCCA	2 cut(s)	761, 1291
BamHI	GGATCC	2 cut(s)	261, 1891
BanI	GGYRCC	1 cut(s)	1067
BarI	GAAGNNNNNNTAC	2 cut(s)	2376, 2408
BauI	CACGAG	1 cut(s)	203
BbsI	GAAGAC	2 cut(s)	822, 2034
Bbv12I	GWGCWC	2 cut(s)	234, 980
BbvI	GCAGC	5 cut(s)	1003, 1324, 1421, 2097, 2314
BccI	CCATC	8 cut(s)	932, 1241, 1265, 1429, 1655, 1787, 1840, 2192
BceAI	ACGGC	3 cut(s)	337, 354, 1917
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	1 cut(s)	1195
BciVI	GTATCC	1 cut(s)	1300
BclI	TGATCA	1 cut(s)	2077
BcnI	CCSGG	2 cut(s)	519, 706
BcoDI	GTCTC	2 cut(s)	289, 2089
BfaI	CTAG	4 cut(s)	1215, 1487, 1604, 1679
BfmI	CTRYAG	1 cut(s)	1617
BfoI	RGCGCY	3 cut(s)	428, 437, 1522
BfrI	CTTAAG	3 cut(s)	437, 536, 1415
BfuAI	ACCTGC	2 cut(s)	1061, 2224
BfuI	GTATCC	1 cut(s)	1300
BglI	GCCNNNNNGGC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	2345
BisI	GCNGC	9 cut(s)	42, 167, 276, 1017, 1338, 1410, 1938, 2111, 2328
BlsI	GCNGC	9 cut(s)	43, 168, 277, 1018, 1339, 1411, 1939, 2112, 2329
BmcAI	AGTACT	1 cut(s)	914
Bme1390I	CCNGG	3 cut(s)	519, 706, 1195
Bme18I	GGWCC	2 cut(s)	1164, 1211
BmeRI	GACNNNNNGTC	1 cut(s)	1783
BmeT110I	CYCGRG	2 cut(s)	1455, 2444
BmgT120I	GGNCC	3 cut(s)	47, 1164, 1211
BmrFI	CCNGG	3 cut(s)	519, 706, 1195
BmrI	ACTGGG	1 cut(s)	1107
BmuI	ACTGGG	1 cut(s)	1107
BpiI	GAAGAC	2 cut(s)	822, 2034
BplI	GAGNNNNNCTC	2 cut(s)	1627, 1659
BpmI	CTGGAG	3 cut(s)	449, 642, 1986
BpuEI	CTTGAG	2 cut(s)	616, 1556
BpuMI	CCSGG	2 cut(s)	519, 706
BsaBI	GATNNNNATC	2 cut(s)	1311, 1803
BsaHI	GRCGYC	2 cut(s)	56, 146
BsaJI	CCNNGG	6 cut(s)	947, 1095, 1390, 1404, 2132, 2265
BsaWI	WCCGGW	2 cut(s)	661, 752
BsaXI	ACNNNNNCTCC	6 cut(s)	167, 197, 434, 464, 513, 543
Bsc4I	CCNNNNNNNGG	6 cut(s)	771, 925, 1078, 1271, 1587, 2376
Bse118I	RCCGGY	4 cut(s)	129, 499, 655, 1036
Bse1I	ACTGG	8 cut(s)	238, 625, 1011, 1113, 1292, 1508, 1969, 2197
Bse3DI	GCAATG	4 cut(s)	418, 1569, 2253, 2253
Bse8I	GATNNNNATC	2 cut(s)	1311, 1803
BseAI	TCCGGA	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	1195
BseDI	CCNNGG	6 cut(s)	947, 1095, 1390, 1404, 2132, 2265
BseGI	GGATG	5 cut(s)	673, 948, 1252, 1804, 1832
BseJI	GATNNNNATC	2 cut(s)	1311, 1803
BseLI	CCNNNNNNNGG	6 cut(s)	771, 925, 1078, 1271, 1587, 2376
BseMI	GCAATG	4 cut(s)	418, 1569, 2253, 2253
BseMII	CTCAG	4 cut(s)	1506, 1658, 1877, 2084
BseNI	ACTGG	8 cut(s)	238, 625, 1011, 1113, 1292, 1508, 1969, 2197
BseRI	GAGGAG	2 cut(s)	188, 1919
BseSI	GKGCMC	1 cut(s)	980
BseXI	GCAGC	5 cut(s)	1003, 1324, 1421, 2097, 2314
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	3 cut(s)	69, 275, 386
Bsh1285I	CGRYCG	2 cut(s)	67, 282
BshFI	GGCC	4 cut(s)	49, 761, 1291, 2369
BshNI	GGYRCC	1 cut(s)	1067
BsiEI	CGRYCG	2 cut(s)	67, 282
BsiHKAI	GWGCWC	2 cut(s)	234, 980
BsiHKCI	CYCGRG	2 cut(s)	1455, 2444
BslFI	GGGAC	4 cut(s)	721, 1177, 1264, 2405
BslI	CCNNNNNNNGG	6 cut(s)	771, 925, 1078, 1271, 1587, 2376
BsmAI	GTCTC	2 cut(s)	289, 2089
BsmBI	CGTCTC	1 cut(s)	289
BsmFI	GGGAC	4 cut(s)	721, 1177, 1264, 2405
BsmI	GAATGC	2 cut(s)	1096, 1401
BsnI	GGCC	4 cut(s)	49, 761, 1291, 2369
BsoBI	CYCGRG	2 cut(s)	1455, 2444
Bsp1286I	GDGCHC	2 cut(s)	234, 980
Bsp13I	TCCGGA	1 cut(s)	661
Bsp19I	CCATGG	1 cut(s)	1390
Bsp68I	TCGCGA	1 cut(s)	69
BspANI	GGCC	4 cut(s)	49, 761, 1291, 2369
BspCNI	CTCAG	4 cut(s)	1507, 1657, 1878, 2085
BspEI	TCCGGA	1 cut(s)	661
BspFNI	CGCG	3 cut(s)	69, 275, 386
BspHI	TCATGA	2 cut(s)	100, 2023
BspMI	ACCTGC	2 cut(s)	1061, 2224
BspPI	GGATC	6 cut(s)	256, 269, 1474, 1823, 1886, 1899
BspT107I	GGYRCC	1 cut(s)	1067
BspTI	CTTAAG	3 cut(s)	437, 536, 1415
BsrDI	GCAATG	4 cut(s)	418, 1569, 2253, 2253
BsrFI	RCCGGY	4 cut(s)	129, 499, 655, 1036
BsrI	ACTGG	8 cut(s)	238, 625, 1011, 1113, 1292, 1508, 1969, 2197
BssAI	RCCGGY	4 cut(s)	129, 499, 655, 1036
BssECI	CCNNGG	6 cut(s)	947, 1095, 1390, 1404, 2132, 2265
BssNI	GRCGYC	2 cut(s)	56, 146
BssSI	CACGAG	1 cut(s)	203
BssT1I	CCWWGG	3 cut(s)	1095, 1390, 2132
Bst2BI	CACGAG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	1195
Bst4CI	ACNGT	3 cut(s)	466, 1141, 1669
Bst6I	CTCTTC	1 cut(s)	2050
BstACI	GRCGYC	2 cut(s)	56, 146
BstAFI	CTTAAG	3 cut(s)	437, 536, 1415
BstC8I	GCNNGC	6 cut(s)	131, 297, 459, 501, 1038, 1499
BstDEI	CTNAG	4 cut(s)	1515, 1644, 1886, 2093
BstDSI	CCRYGG	1 cut(s)	1390
BstENI	CCTNNNNNAGG	1 cut(s)	2374
BstF5I	GGATG	5 cut(s)	673, 948, 1252, 1804, 1832
BstFNI	CGCG	3 cut(s)	69, 275, 386
BstH2I	RGCGCY	3 cut(s)	428, 437, 1522
BstHHI	GCGC	3 cut(s)	427, 436, 1521
BstMAI	GTCTC	2 cut(s)	289, 2089
BstMCI	CGRYCG	2 cut(s)	67, 282
BstNI	CCWGG	1 cut(s)	1195
BstSCI	CCNGG	3 cut(s)	517, 704, 1193
BstSFI	CTRYAG	1 cut(s)	1617
BstSLI	GKGCMC	1 cut(s)	980
BstUI	CGCG	3 cut(s)	69, 275, 386
BstV1I	GCAGC	5 cut(s)	1003, 1324, 1421, 2097, 2314
BstV2I	GAAGAC	2 cut(s)	822, 2034
BstX2I	RGATCY	3 cut(s)	261, 1891, 2345
BstYI	RGATCY	3 cut(s)	261, 1891, 2345
BsuI	GTATCC	1 cut(s)	1300
BsuRI	GGCC	4 cut(s)	49, 761, 1291, 2369
BtgI	CCRYGG	1 cut(s)	1390
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	5 cut(s)	673, 948, 1252, 1804, 1832
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	4 cut(s)	1004, 1005, 1120, 1501
BtuMI	TCGCGA	1 cut(s)	69
BveI	ACCTGC	2 cut(s)	1061, 2224
Cac8I	GCNNGC	6 cut(s)	131, 297, 459, 501, 1038, 1499
CciI	TCATGA	2 cut(s)	100, 2023
CfoI	GCGC	3 cut(s)	427, 436, 1521
Cfr10I	RCCGGY	4 cut(s)	129, 499, 655, 1036
Cfr13I	GGNCC	3 cut(s)	47, 1164, 1211
Csp6I	GTAC	6 cut(s)	178, 913, 1068, 1134, 1673, 2019
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	7 cut(s)	101, 794, 1391, 2024, 2188, 2290, 2362
CviQI	GTAC	6 cut(s)	178, 913, 1068, 1134, 1673, 2019
DdeI	CTNAG	4 cut(s)	1515, 1644, 1886, 2093
DraIII	CACNNNGTG	1 cut(s)	809
DriI	GACNNNNNGTC	1 cut(s)	1783
EaeI	YGGCCR	2 cut(s)	759, 1289
Eam1104I	CTCTTC	1 cut(s)	2050
Eam1105I	GACNNNNNGTC	1 cut(s)	1783
EarI	CTCTTC	1 cut(s)	2050
EciI	GGCGGA	1 cut(s)	167
Eco130I	CCWWGG	3 cut(s)	1095, 1390, 2132
Eco147I	AGGCCT	1 cut(s)	2369
Eco47I	GGWCC	2 cut(s)	1164, 1211
Eco57I	CTGAAG	2 cut(s)	1047, 1467
Eco88I	CYCGRG	2 cut(s)	1455, 2444
EcoNI	CCTNNNNNAGG	1 cut(s)	2374
EcoO109I	RGGNCCY	3 cut(s)	47, 1164, 1211
EcoRI	GAATTC	1 cut(s)	1944
EcoRII	CCWGG	1 cut(s)	1193
EcoT14I	CCWWGG	3 cut(s)	1095, 1390, 2132
ErhI	CCWWGG	3 cut(s)	1095, 1390, 2132
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	7 cut(s)	104, 797, 1394, 2027, 2191, 2293, 2365
FalI	AAGNNNNNCTT	2 cut(s)	1079, 1111
FaqI	GGGAC	4 cut(s)	721, 1177, 1264, 2405
FatI	CATG	7 cut(s)	100, 793, 1390, 2023, 2187, 2289, 2361
FauI	CCCGC	3 cut(s)	37, 162, 1079
FauNDI	CATATG	1 cut(s)	783
FbaI	TGATCA	1 cut(s)	2077
Fnu4HI	GCNGC	9 cut(s)	42, 167, 276, 1017, 1338, 1410, 1938, 2111, 2328
FokI	GGATG	5 cut(s)	680, 955, 1259, 1791, 1819
Fsp4HI	GCNGC	9 cut(s)	42, 167, 276, 1017, 1338, 1410, 1938, 2111, 2328
FspBI	CTAG	4 cut(s)	1215, 1487, 1604, 1679
GlaI	GCGC	3 cut(s)	426, 435, 1520
GluI	GCNGC	9 cut(s)	42, 167, 276, 1017, 1338, 1410, 1938, 2111, 2328
GsuI	CTGGAG	3 cut(s)	449, 642, 1986
HaeII	RGCGCY	3 cut(s)	428, 437, 1522
HaeIII	GGCC	4 cut(s)	49, 761, 1291, 2369
HhaI	GCGC	3 cut(s)	427, 436, 1521
Hin1I	GRCGYC	2 cut(s)	56, 146
Hin1II	CATG	7 cut(s)	104, 797, 1394, 2027, 2191, 2293, 2365
Hin6I	GCGC	3 cut(s)	425, 434, 1519
HinP1I	GCGC	3 cut(s)	425, 434, 1519
HindIII	AAGCTT	3 cut(s)	836, 1106, 2280
HinfI	GANTC	8 cut(s)	97, 223, 370, 445, 469, 1511, 1784, 2068
HphI	GGTGA	7 cut(s)	26, 335, 370, 1808, 2186, 2207, 2348
Hpy166II	GTNNAC	3 cut(s)	382, 978, 1298
Hpy8I	GTNNAC	3 cut(s)	382, 978, 1298
Hpy99I	CGWCG	3 cut(s)	58, 151, 275
HpyCH4III	ACNGT	3 cut(s)	466, 1141, 1669
HpyCH4IV	ACGT	4 cut(s)	56, 146, 1300, 1741
HpyF3I	CTNAG	4 cut(s)	1515, 1644, 1886, 2093
HpySE526I	ACGT	4 cut(s)	56, 146, 1300, 1741
Hsp92I	GRCGYC	2 cut(s)	56, 146
Hsp92II	CATG	7 cut(s)	104, 797, 1394, 2027, 2191, 2293, 2365
HspAI	GCGC	3 cut(s)	425, 434, 1519
Kpn2I	TCCGGA	1 cut(s)	661
KpnI	GGTACC	1 cut(s)	1071
KroI	GCCGGC	3 cut(s)	129, 499, 1036
KroNI	GCCGGC	3 cut(s)	131, 501, 1038
Ksp22I	TGATCA	1 cut(s)	2077
LmnI	GCTCC	4 cut(s)	349, 454, 508, 532
Lsp1109I	GCAGC	5 cut(s)	1003, 1324, 1421, 2097, 2314
MaeI	CTAG	4 cut(s)	1215, 1487, 1604, 1679
MaeII	ACGT	4 cut(s)	56, 146, 1300, 1741
MfeI	CAATTG	2 cut(s)	1920, 2319
MflI	RGATCY	3 cut(s)	261, 1891, 2345
MhlI	GDGCHC	2 cut(s)	234, 980
MlsI	TGGCCA	2 cut(s)	761, 1291
MluNI	TGGCCA	2 cut(s)	761, 1291
MlyI	GAGTC	2 cut(s)	232, 1793
MmeI	TCCRAC	7 cut(s)	174, 285, 432, 1244, 1611, 1861, 2310
Mox20I	TGGCCA	2 cut(s)	761, 1291
MroI	TCCGGA	1 cut(s)	661
MroNI	GCCGGC	3 cut(s)	129, 499, 1036
MroXI	GAANNNNTTC	1 cut(s)	116
MscI	TGGCCA	2 cut(s)	761, 1291
MseI	TTAA	9 cut(s)	438, 483, 537, 840, 1239, 1416, 1716, 2402, 2430
MslI	CAYNNNNRTG	2 cut(s)	892, 1506
Msp20I	TGGCCA	2 cut(s)	761, 1291
MspCI	CTTAAG	3 cut(s)	437, 536, 1415
MspR9I	CCNGG	3 cut(s)	519, 706, 1195
MunI	CAATTG	2 cut(s)	1920, 2319
Mva1269I	GAATGC	2 cut(s)	1096, 1401
MvaI	CCWGG	1 cut(s)	1195
MvnI	CGCG	3 cut(s)	69, 275, 386
NaeI	GCCGGC	3 cut(s)	131, 501, 1038
NciI	CCSGG	2 cut(s)	519, 706
NcoI	CCATGG	1 cut(s)	1390
NdeI	CATATG	1 cut(s)	783
NgoMIV	GCCGGC	3 cut(s)	129, 499, 1036
NlaIII	CATG	7 cut(s)	104, 797, 1394, 2027, 2191, 2293, 2365
NmeAIII	GCCGAG	3 cut(s)	442, 972, 1547
NruI	TCGCGA	1 cut(s)	69
PaeR7I	CTCGAG	2 cut(s)	1455, 2444
PagI	TCATGA	2 cut(s)	100, 2023
PaqCI	CACCTGC	1 cut(s)	2224
PceI	AGGCCT	1 cut(s)	2369
PcsI	WCGNNNNNNNCGW	3 cut(s)	186, 279, 458
PctI	GAATGC	2 cut(s)	1096, 1401
PdiI	GCCGGC	3 cut(s)	131, 501, 1038
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	6 cut(s)	97, 370, 445, 469, 1511, 2068
PflMI	CCANNNNNTGG	1 cut(s)	1271
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	9 cut(s)	43, 168, 277, 1018, 1339, 1411, 1939, 2112, 2329
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	2 cut(s)	231, 1792
PpsI	GAGTC	2 cut(s)	231, 1792
PpuMI	RGGWCCY	2 cut(s)	1164, 1211
PshBI	ATTAAT	1 cut(s)	2430
Psp5II	RGGWCCY	2 cut(s)	1164, 1211
Psp6I	CCWGG	1 cut(s)	1193
PspGI	CCWGG	1 cut(s)	1193
PspPI	GGNCC	3 cut(s)	47, 1164, 1211
PspPPI	RGGWCCY	2 cut(s)	1164, 1211
PsuI	RGATCY	3 cut(s)	261, 1891, 2345
PvuI	CGATCG	1 cut(s)	67
RruI	TCGCGA	1 cut(s)	69
RsaI	GTAC	6 cut(s)	179, 914, 1069, 1135, 1674, 2020
RsaNI	GTAC	6 cut(s)	178, 913, 1068, 1134, 1673, 2019
RseI	CAYNNNNRTG	2 cut(s)	892, 1506
SaqAI	TTAA	9 cut(s)	438, 483, 537, 840, 1239, 1416, 1716, 2402, 2430
SatI	GCNGC	9 cut(s)	42, 167, 276, 1017, 1338, 1410, 1938, 2111, 2328
Sau96I	GGNCC	3 cut(s)	47, 1164, 1211
ScaI	AGTACT	1 cut(s)	914
SchI	GAGTC	2 cut(s)	232, 1793
ScrFI	CCNGG	3 cut(s)	519, 706, 1195
SduI	GDGCHC	2 cut(s)	234, 980
SfcI	CTRYAG	1 cut(s)	1617
Sfr274I	CTCGAG	2 cut(s)	1455, 2444
SinI	GGWCC	2 cut(s)	1164, 1211
SlaI	CTCGAG	2 cut(s)	1455, 2444
SmiMI	CAYNNNNRTG	2 cut(s)	892, 1506
SmlI	CTYRAG	7 cut(s)	437, 536, 595, 1415, 1455, 1535, 2444
SmoI	CTYRAG	7 cut(s)	437, 536, 595, 1415, 1455, 1535, 2444
SseBI	AGGCCT	1 cut(s)	2369
SspMI	CTAG	4 cut(s)	1215, 1487, 1604, 1679
StuI	AGGCCT	1 cut(s)	2369
StyD4I	CCNGG	3 cut(s)	517, 704, 1193
StyI	CCWWGG	3 cut(s)	1095, 1390, 2132
TaaI	ACNGT	3 cut(s)	466, 1141, 1669
TaiI	ACGT	4 cut(s)	59, 149, 1303, 1744
TaqI	TCGA	6 cut(s)	215, 234, 590, 990, 1456, 2445
TatI	WGTACW	1 cut(s)	912
TauI	GCSGC	4 cut(s)	44, 169, 278, 1940
TfiI	GAWTC	6 cut(s)	97, 370, 445, 469, 1511, 2068
Tru1I	TTAA	9 cut(s)	438, 483, 537, 840, 1239, 1416, 1716, 2402, 2430
Tru9I	TTAA	9 cut(s)	438, 483, 537, 840, 1239, 1416, 1716, 2402, 2430
TscAI	CASTG	4 cut(s)	1005, 1011, 1120, 1508
TseI	GCWGC	5 cut(s)	1016, 1337, 1409, 2110, 2327
TspGWI	ACGGA	2 cut(s)	813, 1246
TspRI	CASTG	4 cut(s)	1005, 1011, 1120, 1508
Van91I	CCANNNNNTGG	1 cut(s)	1271
Vha464I	CTTAAG	3 cut(s)	437, 536, 1415
VneI	GTGCAC	1 cut(s)	976
VpaK11BI	GGWCC	2 cut(s)	1164, 1211
VspI	ATTAAT	1 cut(s)	2430
XagI	CCTNNNNNAGG	1 cut(s)	2374
XapI	RAATTY	5 cut(s)	493, 789, 1278, 1594, 1944
XhoI	CTCGAG	2 cut(s)	1455, 2444
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	4 cut(s)	1215, 1487, 1604, 1679
ZraI	GACGTC	2 cut(s)	57, 147
ZrmI	AGTACT	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.