Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001873

Physical Location & Seq

Genomic Coordinates Forward (+)

14050298 .. 14056490

Gene Structure 6193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG161500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGGGGAAAGGAGGTGAGGATTTCGGTAAGCGAGAGAAGGCGGCGGGGCCTACGACGTCGTCCGATCGCGATGCGTTTCCGGCGTGGAGTAAGGAGATTCATGAGTGCGAGAAGCACTTCGGCGTGAGCCGGCAGTTAGGGCTGACGTCGGCGGAGGTGGCGAAGCGGCGGGAGGAGTACGGGTGGAACGAATTGGAGAAGCACGAGGGGCAGTCGATTTGGAGTCTGGTGCTCGACCAGTTCAACGATACTCTGGTGCGGATCCTGCTCGTCGCGGCGGTCGTCTCGTTTGTGCTGGCGTGGTTGGACGGGGAGGAAGGCGGTGAGAAGGAGATCACGGCGTTTGTGGAGCCGTTGGTGATCTTTTTGATTCTGATTGTGAACGCGATTGTTGGGGTTTGGCAGGAGAGCAATGCCGAGAAGGCGCTGGAGGCGCTTAAGGAGATTCAGTCGGAGCAGGCGACTGTGATTCGGAATGGGAGTAAGGTTCCGAATTTGCCGGCAAAGGAGCTTGTTCCCGGAGATATTGTGGAGCTTAAGGTTGGGGATAAGGTTCCGGCTGATATGCGTGTAGTGCAGTTGATTAGCTCGACCTTGAGGGTTGAGCAGGGTTCGTTGACTGGAGAGAGTGAGGCTGTGAATAAGACTAACAAGCCGGTTCCGGAGGATGCTGATATTCAGGGGAAGTGGTCTATGGTGTTTGCCGGGACGACTATTGTGAATGGGAATTGCATTTGCCTGGTTGCCCAGACCGGAATGGCCACCGAGATTGGGAAGGTGCATATGCAAATTCATGTGGCTTCACAGAGTGAGGAAGACACTCCGTTGAAGAAGAAGCTTAATGAGTTTGGGGAGATGCTCACTATGATAATTGGAGTGATTTGTGCATTGGTGTGGCTCATCAATGTCAAGTACTTCCTCACTTGGGAATATGTTGATGGGATGCCAAGGAACTTCAAGTTTTCATTTGAGAAGTGCACTTATTACTTTGAGATTGCAGTGGCACTGGCTGTGGCTGCTATTCCTGAAGGTTTGCCAGCAGTCATCACTACCTGCTTGGCACTTGGTACCCGCAAAATGGCTCAGAAGAATGCCTTGGTTAGAAAGCTTCCCAGTGTTGAAACTCTGGGTTGTACCACAGTCATTTGTTCTGACAAAACAGGGACCTTGACTACGAATCAAATGGCAGTTTCCAGGCTTGTAGCTTTGGGTCCTAGACCAACTATACTACGAAAGTTTAAGGTGGATGGGACTACTTACAATCCAGCAGATGGCAAAATTTATGACTGGCCAAGTGGACGTATGGATACTAATCTTCAAACGATTGCAAAGGTAGCTGCTGTCTGTAATGATGCTGGTATTACCCAATCAGAACAGAAGTATGTTGCCCATGGAATGCCTACCGAGGCAGCTCTTAAGGTTTTAGTTGAGAAGATGGGGCTTCCTGAAGCATCTCGAGGTGTGGGATCAAGTAAAACTGATTTACTAGGTTGTTGCAAGCACTGGAATGAATCTGAGCGCCGAGTTGCAACTCTTGAGTTTGATCGTGATAGGAAATCTATGGGTGTCATTGCCACCTCCCGTTCGGGGAAAAATTCTTTGCTAGTGAAGGGTGCTGTAGAAAATGTGTTGGAGAGAAGCACTCAGGTTCAATTGCTTGATGGAACTGTTGTACCACTAGATAATAACTCAAGGAACTACATCTTACAAGCTCTTAATGAGATGTCATCTGATGCACTACGTTGTCTGGGATTTGCATATAAAGATGACTTGGCTGACTTTGAGTCCTATGATGGTGATGAGCATCCAGCTCACAAGCAATTACTTGATCCATCCAATTATTCATCAATAGAGAGCGAACTTGTTTTTGTTGGCTTGGTTGGACTGAGGGATCCACCAAGAGAGGAGGTTTTTGATGCAATTGAAGATTGCCGTGCAGCAGGAATTCGTGTTATGGTAATTACTGGAGATAACAAGAACACAGCAGAAGCTATATGTCGTGAAATAGGTGTTTTTGGTACTCATGAAGACATAAGTACAAGAAGCATAACAGGAAGAGAGTTTATGAATCTGCCTGATCAGAAAGCCTTTCTGAGACAAGGTGGTGGGCTGCTCTTTTCAAGGGCTGAACCAAGGCACAAACAAGAGATTGTGAGGTTGCTGAAAGATGAAGGTGAGGTGGTTGCCATGACTGGTGATGGAGTAAATGATGCACCTGCATTGAAACTTGCTGATATTGGAATTGCAATGGGCATTGCTGGAACCGAGGTAATTATTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

760

Amino Acids

83.04

Weight (kDa)

5.22

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	29 - 96	1.9e-21	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	149 - 261	1.2e-23	P-type ATPase actuator domain
Cation_ATPase	PF13246	439 - 636	1.7e-42	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	623 - 745	1.9e-15	haloacid dehalogenase-like hydrolase
HAD	PF12710	629 - 742	8.2e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07670 AT1G07670 AT1G07810
fragaria_vesca	FvH4_3g34570 FvH4_3g34570 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760
malus_domestica	MD04G1038900.v1.1 MD04G1116400.v1.1 MD11G1117700.v1.1 MD12G1132100.v1.1 MD13G1142700.v1.1
prunus_persica	Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1
pyrus_communis	pycom03g12390 pycom03g12400 pycom04g10640 pycom07g10780 pycom11g09870 pycom12g12810 pycom16g18850
rosa_chinensis	RchiOBHm_Chr3g0467981 RchiOBHm_Chr5g0062231
rosa_laevigata	RLG00000024462 RLG00000035545
rosa_multiflora	Rmu_co8021382.1_g000001 Rmu_sc0001793.1_g000060 Rmu_ssc0000409.1_g000035
rosa_roxburghii	Rroxscaffold_1G00018460 Rroxscaffold_6G00413240
rosa_rugosa	Rorug03G0090700 Rorug03G0090800 Rorug05G0347300
rosa_samantha	Rh3AG139600 Rh3BG161100 Rh3CG161000 Rh3DG161500 Rh5AG407900 Rh5BG421600 Rh5CG445600 Rh5DG436600
rosa_wichuraiana	Rw3G013200 Rw5G038440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2281
AarI	CACCTGC	1 cut(s)	2224
AatII	GACGTC	2 cut(s)	59, 149
Acc36I	ACCTGC	2 cut(s)	1061, 2224
Acc65I	GGTACC	1 cut(s)	1067
AccB1I	GGYRCC	1 cut(s)	1067
AccB7I	CCANNNNNTGG	1 cut(s)	1271
AccII	CGCG	3 cut(s)	69, 275, 386
AccIII	TCCGGA	1 cut(s)	661
AclWI	GGATC	6 cut(s)	256, 269, 1474, 1823, 1886, 1899
AcoI	YGGCCR	2 cut(s)	759, 1289
AcsI	RAATTY	5 cut(s)	493, 789, 1278, 1594, 1944
AcuI	CTGAAG	2 cut(s)	1047, 1467
AcyI	GRCGYC	2 cut(s)	56, 146
AdeI	CACNNNGTG	1 cut(s)	809
AfaI	GTAC	7 cut(s)	179, 914, 1069, 1135, 1674, 2020, 2038
AfiI	CCNNNNNNNGG	5 cut(s)	771, 925, 1078, 1271, 1587
AflII	CTTAAG	3 cut(s)	437, 536, 1415
AgsI	TTSAA	9 cut(s)	244, 829, 958, 1121, 1319, 1652, 1925, 2121, 2224
AhdI	GACNNNNNGTC	1 cut(s)	1783
AjnI	CCWGG	2 cut(s)	738, 1193
AjuI	GAANNNNNNNTTGG	2 cut(s)	1079, 1111
Alw21I	GWGCWC	2 cut(s)	234, 980
Alw26I	GTCTC	2 cut(s)	289, 2089
Alw44I	GTGCAC	1 cut(s)	976
AlwI	GGATC	6 cut(s)	256, 269, 1474, 1823, 1886, 1899
Ama87I	CYCGRG	1 cut(s)	1455
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	3 cut(s)	47, 759, 1289
ApaLI	GTGCAC	1 cut(s)	976
ApeKI	GCWGC	5 cut(s)	1016, 1337, 1409, 1937, 2110
ApoI	RAATTY	5 cut(s)	493, 789, 1278, 1594, 1944
Asp700I	GAANNNNTTC	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	1067
AspLEI	GCGC	3 cut(s)	427, 436, 1521
AspS9I	GGNCC	3 cut(s)	47, 1164, 1211
AsuC2I	CCSGG	2 cut(s)	519, 706
AsuHPI	GGTGA	6 cut(s)	26, 335, 370, 1808, 2186, 2207
AvaI	CYCGRG	1 cut(s)	1455
AvaII	GGWCC	2 cut(s)	1164, 1211
BaeGI	GKGCMC	1 cut(s)	980
BaeI	ACNNNNGTAYC	4 cut(s)	240, 273, 1656, 1689
BalI	TGGCCA	2 cut(s)	761, 1291
BamHI	GGATCC	2 cut(s)	261, 1891
BanI	GGYRCC	1 cut(s)	1067
BauI	CACGAG	1 cut(s)	203
BbsI	GAAGAC	2 cut(s)	822, 2034
Bbv12I	GWGCWC	2 cut(s)	234, 980
BbvI	GCAGC	5 cut(s)	1003, 1324, 1421, 1949, 2097
BccI	CCATC	8 cut(s)	932, 1241, 1265, 1429, 1655, 1787, 1840, 2192
BceAI	ACGGC	3 cut(s)	337, 354, 1917
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	2 cut(s)	740, 1195
BciVI	GTATCC	1 cut(s)	1300
BclI	TGATCA	1 cut(s)	2077
BcnI	CCSGG	2 cut(s)	519, 706
BcoDI	GTCTC	2 cut(s)	289, 2089
BfaI	CTAG	4 cut(s)	1215, 1487, 1604, 1679
BfmI	CTRYAG	1 cut(s)	1617
BfoI	RGCGCY	3 cut(s)	428, 437, 1522
BfrI	CTTAAG	3 cut(s)	437, 536, 1415
BfuAI	ACCTGC	2 cut(s)	1061, 2224
BfuI	GTATCC	1 cut(s)	1300
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	8 cut(s)	42, 167, 276, 1017, 1338, 1410, 1938, 2111
BlsI	GCNGC	8 cut(s)	43, 168, 277, 1018, 1339, 1411, 1939, 2112
BmcAI	AGTACT	1 cut(s)	914
Bme1390I	CCNGG	4 cut(s)	519, 706, 740, 1195
Bme18I	GGWCC	2 cut(s)	1164, 1211
BmeRI	GACNNNNNGTC	1 cut(s)	1783
BmeT110I	CYCGRG	1 cut(s)	1455
BmgT120I	GGNCC	3 cut(s)	47, 1164, 1211
BmrFI	CCNGG	4 cut(s)	519, 706, 740, 1195
BmrI	ACTGGG	1 cut(s)	1107
BmuI	ACTGGG	1 cut(s)	1107
BpiI	GAAGAC	2 cut(s)	822, 2034
BplI	GAGNNNNNCTC	2 cut(s)	1627, 1659
BpmI	CTGGAG	3 cut(s)	449, 642, 1986
BpuEI	CTTGAG	3 cut(s)	616, 1556, 1675
BpuMI	CCSGG	2 cut(s)	519, 706
BsaBI	GATNNNNATC	2 cut(s)	1311, 1803
BsaHI	GRCGYC	2 cut(s)	56, 146
BsaJI	CCNNGG	6 cut(s)	947, 1095, 1390, 1404, 2132, 2265
BsaWI	WCCGGW	2 cut(s)	661, 752
BsaXI	ACNNNNNCTCC	6 cut(s)	167, 197, 434, 464, 513, 543
Bsc4I	CCNNNNNNNGG	5 cut(s)	771, 925, 1078, 1271, 1587
Bse118I	RCCGGY	3 cut(s)	129, 499, 655
Bse1I	ACTGG	8 cut(s)	238, 625, 1011, 1113, 1292, 1508, 1969, 2197
Bse3DI	GCAATG	4 cut(s)	418, 1569, 2253, 2253
Bse8I	GATNNNNATC	2 cut(s)	1311, 1803
BseAI	TCCGGA	1 cut(s)	661
BseBI	CCWGG	2 cut(s)	740, 1195
BseDI	CCNNGG	6 cut(s)	947, 1095, 1390, 1404, 2132, 2265
BseGI	GGATG	5 cut(s)	673, 948, 1252, 1804, 1832
BseJI	GATNNNNATC	2 cut(s)	1311, 1803
BseLI	CCNNNNNNNGG	5 cut(s)	771, 925, 1078, 1271, 1587
BseMI	GCAATG	4 cut(s)	418, 1569, 2253, 2253
BseMII	CTCAG	5 cut(s)	1097, 1506, 1658, 1877, 2084
BseNI	ACTGG	8 cut(s)	238, 625, 1011, 1113, 1292, 1508, 1969, 2197
BseRI	GAGGAG	2 cut(s)	188, 1919
BseSI	GKGCMC	1 cut(s)	980
BseXI	GCAGC	5 cut(s)	1003, 1324, 1421, 1949, 2097
BsgI	GTGCAG	2 cut(s)	596, 1956
Bsh1236I	CGCG	3 cut(s)	69, 275, 386
Bsh1285I	CGRYCG	2 cut(s)	67, 282
BshFI	GGCC	3 cut(s)	49, 761, 1291
BshNI	GGYRCC	1 cut(s)	1067
BsiEI	CGRYCG	2 cut(s)	67, 282
BsiHKAI	GWGCWC	2 cut(s)	234, 980
BsiHKCI	CYCGRG	1 cut(s)	1455
BsiSI	CCGG	9 cut(s)	80, 130, 500, 519, 557, 656, 662, 705, 753
BslFI	GGGAC	3 cut(s)	721, 1177, 1264
BslI	CCNNNNNNNGG	5 cut(s)	771, 925, 1078, 1271, 1587
BsmAI	GTCTC	2 cut(s)	289, 2089
BsmBI	CGTCTC	1 cut(s)	289
BsmFI	GGGAC	3 cut(s)	721, 1177, 1264
BsmI	GAATGC	2 cut(s)	1096, 1401
BsnI	GGCC	3 cut(s)	49, 761, 1291
BsoBI	CYCGRG	1 cut(s)	1455
Bsp1286I	GDGCHC	2 cut(s)	234, 980
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	9 cut(s)	64, 261, 333, 360, 1466, 1543, 1828, 1891, 2077
Bsp19I	CCATGG	1 cut(s)	1390
Bsp68I	TCGCGA	1 cut(s)	69
BspANI	GGCC	3 cut(s)	49, 761, 1291
BspCNI	CTCAG	5 cut(s)	1096, 1507, 1657, 1878, 2085
BspEI	TCCGGA	1 cut(s)	661
BspFNI	CGCG	3 cut(s)	69, 275, 386
BspHI	TCATGA	2 cut(s)	100, 2023
BspMI	ACCTGC	2 cut(s)	1061, 2224
BspPI	GGATC	6 cut(s)	256, 269, 1474, 1823, 1886, 1899
BspT107I	GGYRCC	1 cut(s)	1067
BspTI	CTTAAG	3 cut(s)	437, 536, 1415
BsrDI	GCAATG	4 cut(s)	418, 1569, 2253, 2253
BsrFI	RCCGGY	3 cut(s)	129, 499, 655
BsrI	ACTGG	8 cut(s)	238, 625, 1011, 1113, 1292, 1508, 1969, 2197
BssAI	RCCGGY	3 cut(s)	129, 499, 655
BssECI	CCNNGG	6 cut(s)	947, 1095, 1390, 1404, 2132, 2265
BssMI	GATC	9 cut(s)	64, 261, 333, 360, 1466, 1543, 1828, 1891, 2077
BssNI	GRCGYC	2 cut(s)	56, 146
BssSI	CACGAG	1 cut(s)	203
BssT1I	CCWWGG	4 cut(s)	947, 1095, 1390, 2132
Bst2BI	CACGAG	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	740, 1195
Bst4CI	ACNGT	3 cut(s)	466, 1141, 1669
Bst6I	CTCTTC	1 cut(s)	2050
BstACI	GRCGYC	2 cut(s)	56, 146
BstAFI	CTTAAG	3 cut(s)	437, 536, 1415
BstC8I	GCNNGC	6 cut(s)	131, 297, 459, 501, 1038, 1499
BstDEI	CTNAG	5 cut(s)	1083, 1515, 1644, 1886, 2093
BstDSI	CCRYGG	1 cut(s)	1390
BstF5I	GGATG	5 cut(s)	673, 948, 1252, 1804, 1832
BstFNI	CGCG	3 cut(s)	69, 275, 386
BstH2I	RGCGCY	3 cut(s)	428, 437, 1522
BstHHI	GCGC	3 cut(s)	427, 436, 1521
BstKTI	GATC	9 cut(s)	67, 264, 336, 363, 1469, 1546, 1831, 1894, 2080
BstMAI	GTCTC	2 cut(s)	289, 2089
BstMBI	GATC	9 cut(s)	64, 261, 333, 360, 1466, 1543, 1828, 1891, 2077
BstMCI	CGRYCG	2 cut(s)	67, 282
BstNI	CCWGG	2 cut(s)	740, 1195
BstSCI	CCNGG	4 cut(s)	517, 704, 738, 1193
BstSFI	CTRYAG	1 cut(s)	1617
BstSLI	GKGCMC	1 cut(s)	980
BstUI	CGCG	3 cut(s)	69, 275, 386
BstV1I	GCAGC	5 cut(s)	1003, 1324, 1421, 1949, 2097
BstV2I	GAAGAC	2 cut(s)	822, 2034
BstX2I	RGATCY	2 cut(s)	261, 1891
BstYI	RGATCY	2 cut(s)	261, 1891
BsuI	GTATCC	1 cut(s)	1300
BsuRI	GGCC	3 cut(s)	49, 761, 1291
BtgI	CCRYGG	1 cut(s)	1390
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	5 cut(s)	673, 948, 1252, 1804, 1832
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	4 cut(s)	1004, 1005, 1120, 1501
BtuMI	TCGCGA	1 cut(s)	69
BveI	ACCTGC	2 cut(s)	1061, 2224
Cac8I	GCNNGC	6 cut(s)	131, 297, 459, 501, 1038, 1499
CciI	TCATGA	2 cut(s)	100, 2023
CfoI	GCGC	3 cut(s)	427, 436, 1521
Cfr10I	RCCGGY	3 cut(s)	129, 499, 655
Cfr13I	GGNCC	3 cut(s)	47, 1164, 1211
Csp6I	GTAC	7 cut(s)	178, 913, 1068, 1134, 1673, 2019, 2037
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	5 cut(s)	101, 794, 1391, 2024, 2188
CviQI	GTAC	7 cut(s)	178, 913, 1068, 1134, 1673, 2019, 2037
DdeI	CTNAG	5 cut(s)	1083, 1515, 1644, 1886, 2093
DpnI	GATC	9 cut(s)	66, 263, 335, 362, 1468, 1545, 1830, 1893, 2079
DpnII	GATC	9 cut(s)	64, 261, 333, 360, 1466, 1543, 1828, 1891, 2077
DraIII	CACNNNGTG	1 cut(s)	809
DriI	GACNNNNNGTC	1 cut(s)	1783
EaeI	YGGCCR	2 cut(s)	759, 1289
Eam1104I	CTCTTC	1 cut(s)	2050
Eam1105I	GACNNNNNGTC	1 cut(s)	1783
EarI	CTCTTC	1 cut(s)	2050
EciI	GGCGGA	1 cut(s)	167
Eco130I	CCWWGG	4 cut(s)	947, 1095, 1390, 2132
Eco47I	GGWCC	2 cut(s)	1164, 1211
Eco57I	CTGAAG	2 cut(s)	1047, 1467
Eco88I	CYCGRG	1 cut(s)	1455
EcoO109I	RGGNCCY	3 cut(s)	47, 1164, 1211
EcoRI	GAATTC	1 cut(s)	1944
EcoRII	CCWGG	2 cut(s)	738, 1193
EcoT14I	CCWWGG	4 cut(s)	947, 1095, 1390, 2132
ErhI	CCWWGG	4 cut(s)	947, 1095, 1390, 2132
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	5 cut(s)	104, 797, 1394, 2027, 2191
FalI	AAGNNNNNCTT	2 cut(s)	1079, 1111
FaqI	GGGAC	3 cut(s)	721, 1177, 1264
FatI	CATG	5 cut(s)	100, 793, 1390, 2023, 2187
FauI	CCCGC	3 cut(s)	37, 162, 1079
FauNDI	CATATG	1 cut(s)	783
FbaI	TGATCA	1 cut(s)	2077
Fnu4HI	GCNGC	8 cut(s)	42, 167, 276, 1017, 1338, 1410, 1938, 2111
FokI	GGATG	5 cut(s)	680, 955, 1259, 1791, 1819
Fsp4HI	GCNGC	8 cut(s)	42, 167, 276, 1017, 1338, 1410, 1938, 2111
FspBI	CTAG	4 cut(s)	1215, 1487, 1604, 1679
GlaI	GCGC	3 cut(s)	426, 435, 1520
GluI	GCNGC	8 cut(s)	42, 167, 276, 1017, 1338, 1410, 1938, 2111
GsuI	CTGGAG	3 cut(s)	449, 642, 1986
HaeII	RGCGCY	3 cut(s)	428, 437, 1522
HaeIII	GGCC	3 cut(s)	49, 761, 1291
HapII	CCGG	9 cut(s)	80, 130, 500, 519, 557, 656, 662, 705, 753
HhaI	GCGC	3 cut(s)	427, 436, 1521
Hin1I	GRCGYC	2 cut(s)	56, 146
Hin1II	CATG	5 cut(s)	104, 797, 1394, 2027, 2191
Hin6I	GCGC	3 cut(s)	425, 434, 1519
HinP1I	GCGC	3 cut(s)	425, 434, 1519
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HindIII	AAGCTT	2 cut(s)	836, 1106
HinfI	GANTC	9 cut(s)	97, 223, 370, 445, 469, 1177, 1511, 1784, 2068
HpaII	CCGG	9 cut(s)	80, 130, 500, 519, 557, 656, 662, 705, 753
HphI	GGTGA	6 cut(s)	26, 335, 370, 1808, 2186, 2207
Hpy166II	GTNNAC	4 cut(s)	382, 618, 978, 1298
Hpy8I	GTNNAC	4 cut(s)	382, 618, 978, 1298
Hpy99I	CGWCG	4 cut(s)	58, 61, 151, 275
HpyAV	CCTTC	8 cut(s)	31, 311, 322, 415, 769, 1022, 1603, 2165
HpyCH4III	ACNGT	3 cut(s)	466, 1141, 1669
HpyCH4IV	ACGT	4 cut(s)	56, 146, 1300, 1741
HpyF3I	CTNAG	5 cut(s)	1083, 1515, 1644, 1886, 2093
HpySE526I	ACGT	4 cut(s)	56, 146, 1300, 1741
Hsp92I	GRCGYC	2 cut(s)	56, 146
Hsp92II	CATG	5 cut(s)	104, 797, 1394, 2027, 2191
HspAI	GCGC	3 cut(s)	425, 434, 1519
Kpn2I	TCCGGA	1 cut(s)	661
KpnI	GGTACC	1 cut(s)	1071
KroI	GCCGGC	2 cut(s)	129, 499
KroNI	GCCGGC	2 cut(s)	131, 501
Ksp22I	TGATCA	1 cut(s)	2077
Kzo9I	GATC	9 cut(s)	64, 261, 333, 360, 1466, 1543, 1828, 1891, 2077
LmnI	GCTCC	4 cut(s)	349, 454, 508, 532
Lsp1109I	GCAGC	5 cut(s)	1003, 1324, 1421, 1949, 2097
MaeI	CTAG	4 cut(s)	1215, 1487, 1604, 1679
MaeII	ACGT	4 cut(s)	56, 146, 1300, 1741
MalI	GATC	9 cut(s)	66, 263, 335, 362, 1468, 1545, 1830, 1893, 2079
MboI	GATC	9 cut(s)	64, 261, 333, 360, 1466, 1543, 1828, 1891, 2077
MboII	GAAGA	9 cut(s)	827, 841, 844, 1099, 1307, 1444, 1937, 2039, 2067
MfeI	CAATTG	2 cut(s)	1652, 1920
MflI	RGATCY	2 cut(s)	261, 1891
MhlI	GDGCHC	2 cut(s)	234, 980
MlsI	TGGCCA	2 cut(s)	761, 1291
MluNI	TGGCCA	2 cut(s)	761, 1291
MlyI	GAGTC	2 cut(s)	232, 1793
MmeI	TCCRAC	4 cut(s)	285, 432, 1611, 1861
Mox20I	TGGCCA	2 cut(s)	761, 1291
MroI	TCCGGA	1 cut(s)	661
MroNI	GCCGGC	2 cut(s)	129, 499
MroXI	GAANNNNTTC	1 cut(s)	116
MscI	TGGCCA	2 cut(s)	761, 1291
MseI	TTAA	6 cut(s)	438, 537, 840, 1239, 1416, 1716
MslI	CAYNNNNRTG	2 cut(s)	892, 1506
Msp20I	TGGCCA	2 cut(s)	761, 1291
MspCI	CTTAAG	3 cut(s)	437, 536, 1415
MspI	CCGG	9 cut(s)	80, 130, 500, 519, 557, 656, 662, 705, 753
MspR9I	CCNGG	4 cut(s)	519, 706, 740, 1195
MunI	CAATTG	2 cut(s)	1652, 1920
Mva1269I	GAATGC	2 cut(s)	1096, 1401
MvaI	CCWGG	2 cut(s)	740, 1195
MvnI	CGCG	3 cut(s)	69, 275, 386
NaeI	GCCGGC	2 cut(s)	131, 501
NciI	CCSGG	2 cut(s)	519, 706
NcoI	CCATGG	1 cut(s)	1390
NdeI	CATATG	1 cut(s)	783
NdeII	GATC	9 cut(s)	64, 261, 333, 360, 1466, 1543, 1828, 1891, 2077
NgoMIV	GCCGGC	2 cut(s)	129, 499
NlaIII	CATG	5 cut(s)	104, 797, 1394, 2027, 2191
NmeAIII	GCCGAG	2 cut(s)	442, 1547
NruI	TCGCGA	1 cut(s)	69
PaeR7I	CTCGAG	1 cut(s)	1455
PagI	TCATGA	2 cut(s)	100, 2023
PaqCI	CACCTGC	1 cut(s)	2224
PcsI	WCGNNNNNNNCGW	3 cut(s)	186, 279, 458
PctI	GAATGC	2 cut(s)	1096, 1401
PdiI	GCCGGC	2 cut(s)	131, 501
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	7 cut(s)	97, 370, 445, 469, 1177, 1511, 2068
PflFI	GACNNNGTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	1271
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	8 cut(s)	43, 168, 277, 1018, 1339, 1411, 1939, 2112
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	2 cut(s)	231, 1792
PpsI	GAGTC	2 cut(s)	231, 1792
PpuMI	RGGWCCY	2 cut(s)	1164, 1211
PsiI	TTATAA	1 cut(s)	2281
Psp5II	RGGWCCY	2 cut(s)	1164, 1211
Psp6I	CCWGG	2 cut(s)	738, 1193
PspGI	CCWGG	2 cut(s)	738, 1193
PspPI	GGNCC	3 cut(s)	47, 1164, 1211
PspPPI	RGGWCCY	2 cut(s)	1164, 1211
PsuI	RGATCY	2 cut(s)	261, 1891
PsyI	GACNNNGTC	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	67
RruI	TCGCGA	1 cut(s)	69
RsaI	GTAC	7 cut(s)	179, 914, 1069, 1135, 1674, 2020, 2038
RsaNI	GTAC	7 cut(s)	178, 913, 1068, 1134, 1673, 2019, 2037
RseI	CAYNNNNRTG	2 cut(s)	892, 1506
SaqAI	TTAA	6 cut(s)	438, 537, 840, 1239, 1416, 1716
SatI	GCNGC	8 cut(s)	42, 167, 276, 1017, 1338, 1410, 1938, 2111
Sau3AI	GATC	9 cut(s)	64, 261, 333, 360, 1466, 1543, 1828, 1891, 2077
Sau96I	GGNCC	3 cut(s)	47, 1164, 1211
ScaI	AGTACT	1 cut(s)	914
SchI	GAGTC	2 cut(s)	232, 1793
ScrFI	CCNGG	4 cut(s)	519, 706, 740, 1195
SduI	GDGCHC	2 cut(s)	234, 980
SfcI	CTRYAG	1 cut(s)	1617
Sfr274I	CTCGAG	1 cut(s)	1455
SinI	GGWCC	2 cut(s)	1164, 1211
SlaI	CTCGAG	1 cut(s)	1455
SmiMI	CAYNNNNRTG	2 cut(s)	892, 1506
SmlI	CTYRAG	7 cut(s)	437, 536, 595, 1415, 1455, 1535, 1690
SmoI	CTYRAG	7 cut(s)	437, 536, 595, 1415, 1455, 1535, 1690
SspMI	CTAG	4 cut(s)	1215, 1487, 1604, 1679
StyD4I	CCNGG	4 cut(s)	517, 704, 738, 1193
StyI	CCWWGG	4 cut(s)	947, 1095, 1390, 2132
TaaI	ACNGT	3 cut(s)	466, 1141, 1669
TaiI	ACGT	4 cut(s)	59, 149, 1303, 1744
TaqI	TCGA	4 cut(s)	215, 234, 590, 1456
TatI	WGTACW	2 cut(s)	912, 2036
TauI	GCSGC	3 cut(s)	44, 169, 278
TfiI	GAWTC	7 cut(s)	97, 370, 445, 469, 1177, 1511, 2068
Tru1I	TTAA	6 cut(s)	438, 537, 840, 1239, 1416, 1716
Tru9I	TTAA	6 cut(s)	438, 537, 840, 1239, 1416, 1716
TscAI	CASTG	4 cut(s)	1005, 1011, 1120, 1508
TseI	GCWGC	5 cut(s)	1016, 1337, 1409, 1937, 2110
TspDTI	ATGAA	8 cut(s)	89, 782, 954, 1524, 1833, 2040, 2081, 2184
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	4 cut(s)	1005, 1011, 1120, 1508
Tth111I	GACNNNGTC	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	1271
Vha464I	CTTAAG	3 cut(s)	437, 536, 1415
VneI	GTGCAC	1 cut(s)	976
VpaK11BI	GGWCC	2 cut(s)	1164, 1211
XapI	RAATTY	5 cut(s)	493, 789, 1278, 1594, 1944
XhoI	CTCGAG	1 cut(s)	1455
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	4 cut(s)	1215, 1487, 1604, 1679
ZraI	GACGTC	2 cut(s)	57, 147
ZrmI	AGTACT	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.