Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001873

Physical Location & Seq

Genomic Coordinates Forward (+)

15626088 .. 15626811

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g18850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCCATATCCTTGTTTGAGAAGAGGATCGGTATAAGAGGAATAATTGTTGGAAATATATTCGATCTTGGTTTTGCACAGCTTGCAGAAGTTTTCTCAAATGACGGTATGTCCTTTTTTGTTAGTTCTCAAAACCTTGTCCCTCAACCTTGGGTTATAGATGACTTGGACGTAGCAAAGGGTGTGTGTGTAAGATTTGCGTGCAGGCATTTAGGTGCATTAGACCATGGACGAATGGTGTACTCTACCTGCTCTATGAATTCACTTGAAAATGAAGTTAGGGTTGTTAGAAATTTGCGAATGGCGGTGAATCAGCAACAAAACAGTAAGGTGAATTACTGGCAATCAAGGCTTTGTTCTATTATGAAGTCTTCTACAAAAGAAATTGCTTTTGATCAGCATTTGCAATATGCACTACAAGGTGGAATTGACAAGCTTGCAGGTGTTATTGGCCTTACTTTTGGTCCTAATGGAAGGAATATTGTATTGGATAAGTGTGGTAGTCCTAAAGTTGTGAATAAGGGAGTCAAATTTGGCAGGGCTATTGAGTTACCGCACGACATTGGAACTATTGGTGAAGCACGAATTAGAGAGGTATTCAGCAACACCAATGACTTTGAGGGTGACAAAACAACAAATACATTAAAGAGAGGAAGTGAATGCACTAGGGGTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

226

Amino Acids

24.87

Weight (kDa)

8.94

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07670 AT1G07670 AT1G07810
fragaria_vesca	FvH4_3g34570 FvH4_3g34570 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760
malus_domestica	MD04G1038900.v1.1 MD04G1116400.v1.1 MD11G1117700.v1.1 MD12G1132100.v1.1 MD13G1142700.v1.1
prunus_persica	Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1
pyrus_communis	pycom03g12390 pycom03g12400 pycom04g10640 pycom07g10780 pycom11g09870 pycom12g12810 pycom16g18850
rosa_chinensis	RchiOBHm_Chr3g0467981 RchiOBHm_Chr5g0062231
rosa_laevigata	RLG00000024462 RLG00000035545
rosa_multiflora	Rmu_co8021382.1_g000001 Rmu_sc0001793.1_g000060 Rmu_ssc0000409.1_g000035
rosa_roxburghii	Rroxscaffold_1G00018460 Rroxscaffold_6G00413240
rosa_rugosa	Rorug03G0090700 Rorug03G0090800 Rorug05G0347300
rosa_samantha	Rh3AG139600 Rh3BG161100 Rh3CG161000 Rh3DG161500 Rh5AG407900 Rh5BG421600 Rh5CG445600 Rh5DG436600
rosa_wichuraiana	Rw3G013200 Rw5G038440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	2 cut(s)	257, 431
AciI	CCGC	2 cut(s)	305, 554
AclWI	GGATC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	259, 292, 530
AfaI	GTAC	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	269
AhdI	GACNNNNNGTC	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	2 cut(s)	82, 436
AluI	AGCT	2 cut(s)	82, 436
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	2 cut(s)	3, 451
ApoI	RAATTY	3 cut(s)	259, 292, 530
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	4 cut(s)	319, 343, 587, 635
AvaII	GGWCC	1 cut(s)	464
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	363
BclI	TGATCA	1 cut(s)	394
BfaI	CTAG	1 cut(s)	666
BfuAI	ACCTGC	2 cut(s)	257, 431
Bme18I	GGWCC	1 cut(s)	464
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	149, 226
Bse1I	ACTGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	149, 226
BseNI	ACTGG	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	5, 453
BslFI	GGGAC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	2 cut(s)	5, 453
Bsp143I	GATC	3 cut(s)	27, 64, 394
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	2 cut(s)	305, 554
BspANI	GGCC	2 cut(s)	5, 453
BspMI	ACCTGC	2 cut(s)	257, 431
BspPI	GGATC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	149, 226
BssMI	GATC	3 cut(s)	27, 64, 394
BssT1I	CCWWGG	2 cut(s)	149, 226
Bst4CI	ACNGT	2 cut(s)	107, 326
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	4 cut(s)	84, 202, 206, 438
BstDSI	CCRYGG	1 cut(s)	226
BstKTI	GATC	3 cut(s)	30, 67, 397
BstMBI	GATC	3 cut(s)	27, 64, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 349
BstV2I	GAAGAC	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	5, 453
BtgI	CCRYGG	1 cut(s)	226
BveI	ACCTGC	2 cut(s)	257, 431
Cac8I	GCNNGC	4 cut(s)	84, 202, 206, 438
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	6 cut(s)	5, 82, 352, 436, 453, 542
CviKI_1	RGCY	6 cut(s)	5, 82, 352, 436, 453, 542
CviQI	GTAC	1 cut(s)	241
DpnI	GATC	3 cut(s)	29, 66, 396
DpnII	GATC	3 cut(s)	27, 64, 394
DriI	GACNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	17
Eam1105I	GACNNNNNGTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	149, 226
Eco47I	GGWCC	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	259
EcoT14I	CCWWGG	2 cut(s)	149, 226
ErhI	CCWWGG	2 cut(s)	149, 226
FaeI	CATG	1 cut(s)	230
FaiI	YATR	9 cut(s)	8, 35, 59, 110, 158, 228, 257, 365, 411
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	394
FspBI	CTAG	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	5, 453
Hin1II	CATG	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	310, 525
HphI	GGTGA	4 cut(s)	319, 343, 587, 635
Hpy166II	GTNNAC	1 cut(s)	241
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	468
HpyCH4III	ACNGT	2 cut(s)	107, 326
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	8 cut(s)	77, 86, 204, 218, 406, 413, 440, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 349
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	27, 64, 394
LpnPI	CCDG	5 cut(s)	190, 262, 325, 426, 523
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	3 cut(s)	549, 623, 671
MalI	GATC	3 cut(s)	29, 66, 396
MboI	GATC	3 cut(s)	27, 64, 394
MboII	GAAGA	2 cut(s)	34, 363
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	45, 259, 292, 334, 384, 426, 530, 585
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	534
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	6 cut(s)	18, 32, 153, 586, 613, 644
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	665
MwoI	GCNNNNNNNGC	2 cut(s)	83, 349
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	3 cut(s)	27, 64, 394
NlaIII	CATG	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	623
PaqCI	CACCTGC	1 cut(s)	431
PctI	GAATGC	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	310
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PspPI	GGNCC	1 cut(s)	464
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	644
Sau3AI	GATC	3 cut(s)	27, 64, 394
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	534
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	8 cut(s)	45, 259, 292, 334, 384, 426, 530, 585
SsiI	CCGC	2 cut(s)	305, 554
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	1 cut(s)	666
StyI	CCWWGG	2 cut(s)	149, 226
TaaI	ACNGT	2 cut(s)	107, 326
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	63
TasI	AATT	8 cut(s)	45, 259, 292, 334, 384, 426, 530, 585
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TseFI	GTSAC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	3 cut(s)	272, 288, 380
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	3 cut(s)	259, 292, 530
XspI	CTAG	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.