Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001873

Physical Location & Seq

Genomic Coordinates Forward (+)

4275526 .. 4275966

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1038900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGTGTAATTGTCAACTCTGTTTCAGGGAAGAAGTCATTGCTAGTGAAGGGTGCTGTAGAGAATTTGATTGAGAAAAGCACCAAGGTTCAATTGCTTGATGGCACTGTTGTACCACTGGACAATACCTCAAGGAACTATATCGTGCAAGCTCTTCATGAGATGTCAACTAGTGCTTTGAAACCACTGAATGATGCACCTGTTTTGAAACTTGCTGATATTGGGATTGCAACGGGCATATCTGGAATTGAGAACCATGTCCATCATAAGGGAATGTGCTGCTGCTTTCAAACAAGTTCCCACATCCATTTTTTAAAGTCTTGTGGACAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

112

Amino Acids

11.79

Weight (kDa)

8.41

Isoelectric Point (pI)

26.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	2 - 63	2.4e-07	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07670 AT1G07670 AT1G07810
fragaria_vesca	FvH4_3g34570 FvH4_3g34570 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760 FvH4_6g14760
malus_domestica	MD04G1038900.v1.1 MD04G1116400.v1.1 MD11G1117700.v1.1 MD12G1132100.v1.1 MD13G1142700.v1.1
prunus_persica	Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1 Prupe.6G246300_v2.0.a1
pyrus_communis	pycom03g12390 pycom03g12400 pycom04g10640 pycom07g10780 pycom11g09870 pycom12g12810 pycom16g18850
rosa_chinensis	RchiOBHm_Chr3g0467981 RchiOBHm_Chr5g0062231
rosa_laevigata	RLG00000024462 RLG00000035545
rosa_multiflora	Rmu_co8021382.1_g000001 Rmu_sc0001793.1_g000060 Rmu_ssc0000409.1_g000035
rosa_roxburghii	Rroxscaffold_1G00018460 Rroxscaffold_6G00413240
rosa_rugosa	Rorug03G0090700 Rorug03G0090800 Rorug05G0347300
rosa_samantha	Rh3AG139600 Rh3BG161100 Rh3CG161000 Rh3DG161500 Rh5AG407900 Rh5BG421600 Rh5CG445600 Rh5DG436600
rosa_wichuraiana	Rw3G013200 Rw5G038440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	64
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	92, 181, 208, 290
AhlI	ACTAGT	1 cut(s)	170
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	279, 282
ApoI	RAATTY	1 cut(s)	64
BaeI	ACNNNNGTAYC	2 cut(s)	96, 129
BbvI	GCAGC	2 cut(s)	266, 269
BccI	CCATC	2 cut(s)	95, 270
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	2 cut(s)	44, 171
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	280, 283
BlsI	GCNGC	2 cut(s)	281, 284
BmsI	GCATC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	266, 269
BslI	CCNNNNNNNGG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	266, 269
BtsCI	GGATG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	105, 116, 185
Cac8I	GCNNGC	1 cut(s)	150
CciI	TCATGA	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	2 cut(s)	158, 257
CviJI	RGCY	2 cut(s)	152, 333
CviKI_1	RGCY	2 cut(s)	152, 333
CviQI	GTAC	1 cut(s)	113
DraI	TTTAAA	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	161, 260
FaiI	YATR	5 cut(s)	141, 159, 239, 258, 267
FatI	CATG	2 cut(s)	157, 256
Fnu4HI	GCNGC	2 cut(s)	280, 283
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	280, 283
FspBI	CTAG	2 cut(s)	44, 171
GluI	GCNGC	2 cut(s)	280, 283
Hin1II	CATG	2 cut(s)	161, 260
HincII	GTYRAC	2 cut(s)	16, 168
HindII	GTYRAC	2 cut(s)	16, 168
Hpy166II	GTNNAC	3 cut(s)	16, 168, 326
Hpy188III	TCNNGA	2 cut(s)	158, 243
Hpy8I	GTNNAC	3 cut(s)	16, 168, 326
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	148, 197, 230
Hsp92II	CATG	2 cut(s)	161, 260
LguI	GCTCTTC	1 cut(s)	159
LpnPI	CCDG	4 cut(s)	12, 104, 213, 228
Lsp1109I	GCAGC	2 cut(s)	266, 269
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	44, 171
MboII	GAAGA	2 cut(s)	43, 146
MfeI	CAATTG	1 cut(s)	92
MluCI	AATT	4 cut(s)	9, 64, 92, 246
MnlI	CCTC	1 cut(s)	139
MseI	TTAA	1 cut(s)	314
MunI	CAATTG	1 cut(s)	92
NlaIII	CATG	2 cut(s)	161, 260
PagI	TCATGA	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	281, 284
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	2 cut(s)	280, 283
SetI	ASST	4 cut(s)	90, 131, 154, 202
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SpeI	ACTAGT	1 cut(s)	170
Sse9I	AATT	4 cut(s)	9, 64, 92, 246
SspMI	CTAG	2 cut(s)	44, 171
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	109
TasI	AATT	4 cut(s)	9, 64, 92, 246
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	3 cut(s)	112, 123, 192
TseI	GCWGC	2 cut(s)	279, 282
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	3 cut(s)	112, 123, 192
XapI	RAATTY	1 cut(s)	64
XspI	CTAG	2 cut(s)	44, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.