Rorug05G0347300

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
42960922 .. 42965379
4458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0347300.1

Sequence Viewer

Length: 1392 bp
ATGGATTTACGCATCGGTGGCGCATCGGCTCTCTCCTTTCTTCTCCTCCTCTTCTTCTTCGCCGGAACCTGCTTCGCATTGCCGGAATATCCTCAGAAGCCCTCCTCCTCGGCGTCGTCCACCGCTCAGATCAACTCCAACTCCGTCCTGGTGGCCCTTCTCGACTCGCATTACTCCGAGCTGGCCGAGCTCGTCGAGAAGGCCCTGCTCCTGCAGACTCTCGAAGAGGCCGTCGGCCGCCACAACATCACCATCTTCGCTCCCCGAAACGACGCCGTCGACCGCGACCTCGACCCCGACTTCAAGCGCTACTTGCTCGAACCCGGGAACCTCAAATCGCTCCAGAAGCTCCTCCTCTTCCACGTTATCCCCACCCGGGTCGGATCCGACGAATGGCCCACCCACACTGCCTCCGCCCGACACCAGACGCTCTCCCAGGACCATCTCCACTTGTCCAGCCTCGCTTCCGGTGAGAAGGCTGTAGATCTCGCCCGGGTCATCCATCCCGACTCCGTGACCCGACCCGACGGAGTCATCCACGCCATCGAGAGGCTTCTTATCCCCCGCTCCGTAGAAGACGACTTCAACCGACGCCGCAGCCTCCGCTCCATCACCGCGGTCAAACCGGAGGGAGCTCCCGAAGTTGACCCGAGAACCAACCGGTTGAAAAAACCCGCCCCGCCGACCAAACCCGGATCCTCACCGGTCCTGCCCATCTACGACGCGTTGGCTCCCGGACCCTCGTTGGCTCCGGCTCCGGCACCCGGACCCGGCGGGCCCCACCACCACTTCAACGGCCACGCCCAGGTGAAAGACTTCATCCAAACACTCTTGCACTACGGGGGTTACAACGAGATGGCGGACATTTTGGTAAATTTAACTTCTCTGGCCACTGAGATGGGTCGTTTAGTATCGGAGGGTTATGTGCTCACTGTTTTGGCTCCGAACGACGAGGCTATGGCGAAGCTGACGACGGACCAGCTCAGCGAGCCGGGTGCGCCGGAGCAGATCATGTACTACCATTTGATTCCCGAGTATCAGACTGAGGAGAGTATGTACAATGCCGTTAGGAGGTTCGGGAAGGTTAGCTATGAAACGCTGCGGTTGCCCAACAAGGTTGTGGCTCAAGAGGCTGATGGGTCCGTTAAGTTCGGGCAGGGAGACGGGTCGGCATACTTGTTCGACCCGGATATTTATACGGATGGTCGGATTTCCGTGCAGGGGATTGATGGGGTTTTGTTCCCGGCAGAAGAGGTGGAGTCCAAGTCCGAAACCAAAACGGTTCAACCCGCTAAGATTGTTGCCAGGCCCAGGAGAGGAAAATTGATGGAAGTAGCATGTCGGATGCTAAGTACCGTTGGACAGAATTCTCGGTTCACCACTTGCCAATGA

Protein Analysis

463

Amino Acids

50.72

Weight (kDa)

5.94

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 57 - 188 5.5e-20 Fasciclin domain
Fasciclin PF02469 305 - 415 1.6e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 760
AccBSI CCGCTC 3 cut(s) 125, 567, 606
AccI GTMKAC 1 cut(s) 279
AccII CGCG 3 cut(s) 285, 617, 725
AclWI GGATC 4 cut(s) 378, 391, 690, 703
AcoI YGGCCR 4 cut(s) 183, 235, 796, 888
AcsI RAATTY 2 cut(s) 874, 1366
AcyI GRCGYC 3 cut(s) 113, 273, 592
AfaI GTAC 3 cut(s) 1016, 1058, 1354
AfeI AGCGCT 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 723
AgeI ACCGGT 2 cut(s) 660, 703
AgsI TTSAA 5 cut(s) 304, 586, 667, 793, 1286
AjnI CCWGG 5 cut(s) 147, 435, 804, 1304, 1310
AluBI AGCT 7 cut(s) 181, 190, 349, 635, 967, 982, 1089
AluI AGCT 7 cut(s) 181, 190, 349, 635, 967, 982, 1089
Alw21I GWGCWC 3 cut(s) 192, 637, 930
Alw26I GTCTC 1 cut(s) 1155
AlwI GGATC 4 cut(s) 378, 391, 690, 703
Ama87I CYCGRG 5 cut(s) 323, 375, 492, 649, 1031
Aor51HI AGCGCT 1 cut(s) 308
ApaI GGGCCC 1 cut(s) 780
ApeKI GCWGC 2 cut(s) 597, 1099
ApoI RAATTY 2 cut(s) 874, 1366
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AsiGI ACCGGT 2 cut(s) 660, 703
Asp700I GAANNNNTTC 1 cut(s) 815
AspLEI GCGC 3 cut(s) 23, 309, 1000
AsuHPI GGTGA 6 cut(s) 241, 482, 604, 693, 820, 1369
AvaI CYCGRG 5 cut(s) 323, 375, 492, 649, 1031
AvaII GGWCC 6 cut(s) 439, 706, 737, 767, 976, 1140
BaeGI GKGCMC 1 cut(s) 780
BalI TGGCCA 1 cut(s) 890
BamHI GGATCC 2 cut(s) 383, 695
BanI GGYRCC 1 cut(s) 760
BanII GRGCYC 3 cut(s) 192, 637, 780
BbsI GAAGAC 1 cut(s) 582
Bbv12I GWGCWC 3 cut(s) 192, 637, 930
BbvI GCAGC 2 cut(s) 609, 1086
BceAI ACGGC 4 cut(s) 215, 260, 811, 1049
BcgI CGANNNNNNTGC 2 cut(s) 977, 1011
BciT130I CCWGG 5 cut(s) 149, 437, 806, 1306, 1312
BcoDI GTCTC 1 cut(s) 1155
BfmI CTRYAG 2 cut(s) 212, 480
BfoI RGCGCY 1 cut(s) 310
BfuAI ACCTGC 1 cut(s) 77
BglII AGATCT 1 cut(s) 484
BisI GCNGC 4 cut(s) 238, 595, 598, 1100
BlpI GCTNAGC 1 cut(s) 983
BlsI GCNGC 4 cut(s) 239, 596, 599, 1101
Bme18I GGWCC 6 cut(s) 439, 706, 737, 767, 976, 1140
BmeT110I CYCGRG 5 cut(s) 323, 375, 492, 649, 1031
BmsI GCATC 3 cut(s) 21, 32, 1335
BpiI GAAGAC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 326
Bpu1102I GCTNAGC 1 cut(s) 983
BpuEI CTTGAG 1 cut(s) 1110
BsaHI GRCGYC 3 cut(s) 113, 273, 592
BsaJI CCNNGG 8 cut(s) 108, 323, 375, 435, 492, 615, 804, 1310
BsaWI WCCGGW 4 cut(s) 467, 625, 660, 703
BsaXI ACNNNNNCTCC 8 cut(s) 125, 155, 395, 425, 1040, 1070, 1250, 1280
Bse118I RCCGGY 2 cut(s) 660, 703
Bse3DI GCAATG 1 cut(s) 77
BseBI CCWGG 5 cut(s) 149, 437, 806, 1306, 1312
BseDI CCNNGG 8 cut(s) 108, 323, 375, 435, 492, 615, 804, 1310
BseGI GGATG 6 cut(s) 498, 502, 534, 819, 1207, 1350
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 5 cut(s) 107, 140, 885, 997, 1035
BseRI GAGGAG 7 cut(s) 35, 38, 94, 97, 341, 344, 1061
BseSI GKGCMC 1 cut(s) 780
BseX3I CGGCCG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 609, 1086
BsgI GTGCAG 1 cut(s) 1238
Bsh1236I CGCG 3 cut(s) 285, 617, 725
Bsh1285I CGRYCG 2 cut(s) 238, 283
BshNI GGYRCC 1 cut(s) 760
BshTI ACCGGT 2 cut(s) 660, 703
BsiEI CGRYCG 2 cut(s) 238, 283
BsiHKAI GWGCWC 3 cut(s) 192, 637, 930
BsiHKCI CYCGRG 5 cut(s) 323, 375, 492, 649, 1031
BsmAI GTCTC 1 cut(s) 1155
BsmBI CGTCTC 1 cut(s) 1155
BsoBI CYCGRG 5 cut(s) 323, 375, 492, 649, 1031
Bsp120I GGGCCC 1 cut(s) 776
Bsp1286I GDGCHC 4 cut(s) 192, 637, 780, 930
Bsp1407I TGTACA 1 cut(s) 1056
Bsp143I GATC 5 cut(s) 129, 383, 484, 695, 1008
Bsp1720I GCTNAGC 1 cut(s) 983
BspCNI CTCAG 5 cut(s) 106, 139, 886, 996, 1036
BspFNI CGCG 3 cut(s) 285, 617, 725
BspMAI CTGCAG 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 4 cut(s) 378, 391, 690, 703
BspT107I GGYRCC 1 cut(s) 760
BsrBI CCGCTC 3 cut(s) 125, 567, 606
BsrDI GCAATG 1 cut(s) 77
BsrFI RCCGGY 2 cut(s) 660, 703
BsrGI TGTACA 1 cut(s) 1056
BssAI RCCGGY 2 cut(s) 660, 703
BssECI CCNNGG 8 cut(s) 108, 323, 375, 435, 492, 615, 804, 1310
BssMI GATC 5 cut(s) 129, 383, 484, 695, 1008
BssNI GRCGYC 3 cut(s) 113, 273, 592
Bst2UI CCWGG 5 cut(s) 149, 437, 806, 1306, 1312
Bst4CI ACNGT 3 cut(s) 934, 1282, 1357
Bst6I CTCTTC 4 cut(s) 56, 219, 362, 1245
BstACI GRCGYC 3 cut(s) 113, 273, 592
BstAUI TGTACA 1 cut(s) 1056
BstC8I GCNNGC 3 cut(s) 183, 776, 989
BstDEI CTNAG 7 cut(s) 93, 126, 894, 983, 1044, 1293, 1349
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 6 cut(s) 498, 502, 534, 819, 1207, 1350
BstFNI CGCG 3 cut(s) 285, 617, 725
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 3 cut(s) 23, 309, 1000
BstKTI GATC 5 cut(s) 132, 386, 487, 698, 1011
BstMAI GTCTC 1 cut(s) 1155
BstMBI GATC 5 cut(s) 129, 383, 484, 695, 1008
BstMCI CGRYCG 2 cut(s) 238, 283
BstMWI GCNNNNNNNGC 9 cut(s) 18, 187, 313, 346, 603, 988, 997, 1105, 1130
BstNI CCWGG 5 cut(s) 149, 437, 806, 1306, 1312
BstNSI RCATGY 1 cut(s) 1341
BstSFI CTRYAG 2 cut(s) 212, 480
BstSLI GKGCMC 1 cut(s) 780
BstUI CGCG 3 cut(s) 285, 617, 725
BstV1I GCAGC 2 cut(s) 609, 1086
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 3 cut(s) 383, 484, 695
BstXI CCANNNNNNTGG 1 cut(s) 898
BstYI RGATCY 3 cut(s) 383, 484, 695
BstZI CGGCCG 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 6 cut(s) 498, 502, 534, 819, 1207, 1350
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 3 cut(s) 405, 891, 930
BveI ACCTGC 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 183, 776, 989
CfoI GCGC 3 cut(s) 23, 309, 1000
Cfr10I RCCGGY 2 cut(s) 660, 703
Cfr42I CCGCGG 1 cut(s) 618
Cfr9I CCCGGG 3 cut(s) 323, 375, 492
CseI GACGC 5 cut(s) 102, 281, 436, 600, 731
Csp6I GTAC 3 cut(s) 1015, 1057, 1353
CspAI ACCGGT 2 cut(s) 660, 703
CviAII CATG 2 cut(s) 1012, 1338
CviQI GTAC 3 cut(s) 1015, 1057, 1353
DdeI CTNAG 7 cut(s) 93, 126, 894, 983, 1044, 1293, 1349
DpnI GATC 5 cut(s) 131, 385, 486, 697, 1010
DpnII GATC 5 cut(s) 129, 383, 484, 695, 1008
EaeI YGGCCR 4 cut(s) 183, 235, 796, 888
EagI CGGCCG 1 cut(s) 235
Eam1104I CTCTTC 4 cut(s) 56, 219, 362, 1245
EarI CTCTTC 4 cut(s) 56, 219, 362, 1245
EciI GGCGGA 2 cut(s) 403, 875
Ecl136II GAGCTC 2 cut(s) 190, 635
EclXI CGGCCG 1 cut(s) 235
Eco24I GRGCYC 3 cut(s) 192, 637, 780
Eco47I GGWCC 6 cut(s) 439, 706, 737, 767, 976, 1140
Eco47III AGCGCT 1 cut(s) 308
Eco52I CGGCCG 1 cut(s) 235
Eco53kI GAGCTC 2 cut(s) 190, 635
Eco88I CYCGRG 5 cut(s) 323, 375, 492, 649, 1031
EcoICRI GAGCTC 2 cut(s) 190, 635
EcoO109I RGGNCCY 2 cut(s) 202, 777
EcoRI GAATTC 1 cut(s) 1366
EcoRII CCWGG 5 cut(s) 147, 435, 804, 1304, 1310
EcoT38I GRGCYC 3 cut(s) 192, 637, 780
Esp3I CGTCTC 1 cut(s) 1155
FaeI CATG 2 cut(s) 1015, 1341
FaiI YATR 8 cut(s) 924, 959, 1013, 1055, 1092, 1174, 1197, 1339
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FatI CATG 2 cut(s) 1011, 1337
FauI CCCGC 5 cut(s) 572, 682, 687, 767, 1297
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 4 cut(s) 238, 595, 598, 1100
FokI GGATG 6 cut(s) 485, 489, 521, 806, 1214, 1357
FriOI GRGCYC 3 cut(s) 192, 637, 780
Fsp4HI GCNGC 4 cut(s) 238, 595, 598, 1100
GlaI GCGC 3 cut(s) 22, 308, 999
GluI GCNGC 4 cut(s) 238, 595, 598, 1100
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 310
HgaI GACGC 5 cut(s) 102, 281, 436, 600, 731
HhaI GCGC 3 cut(s) 23, 309, 1000
Hin1I GRCGYC 3 cut(s) 113, 273, 592
Hin1II CATG 2 cut(s) 1015, 1341
Hin6I GCGC 3 cut(s) 21, 307, 998
HinP1I GCGC 3 cut(s) 21, 307, 998
HincII GTYRAC 2 cut(s) 280, 646
HindII GTYRAC 2 cut(s) 280, 646
HinfI GANTC 6 cut(s) 164, 217, 509, 531, 1027, 1259
HphI GGTGA 6 cut(s) 241, 482, 604, 693, 820, 1369
Hpy166II GTNNAC 4 cut(s) 120, 280, 646, 1377
Hpy8I GTNNAC 4 cut(s) 120, 280, 646, 1377
HpyAV CCTTC 4 cut(s) 167, 193, 469, 1075
HpyCH4III ACNGT 3 cut(s) 934, 1282, 1357
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 214, 835, 1219
HpyF10VI GCNNNNNNNGC 9 cut(s) 18, 187, 313, 346, 603, 988, 997, 1105, 1130
HpyF3I CTNAG 7 cut(s) 93, 126, 894, 983, 1044, 1293, 1349
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 3 cut(s) 113, 273, 592
Hsp92II CATG 2 cut(s) 1015, 1341
HspAI GCGC 3 cut(s) 21, 307, 998
KspI CCGCGG 1 cut(s) 618
Kzo9I GATC 5 cut(s) 129, 383, 484, 695, 1008
Lsp1109I GCAGC 2 cut(s) 609, 1086
LweI GCATC 3 cut(s) 21, 32, 1335
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 514, 845
MalI GATC 5 cut(s) 131, 385, 486, 697, 1010
MbiI CCGCTC 3 cut(s) 125, 567, 606
MboI GATC 5 cut(s) 129, 383, 484, 695, 1008
MboII GAAGA 9 cut(s) 32, 43, 46, 49, 236, 247, 349, 587, 1262
MflI RGATCY 3 cut(s) 383, 484, 695
MhlI GDGCHC 4 cut(s) 192, 637, 780, 930
MlsI TGGCCA 1 cut(s) 890
MluCI AATT 3 cut(s) 874, 1322, 1366
MluI ACGCGT 1 cut(s) 723
MluNI TGGCCA 1 cut(s) 890
MlyI GAGTC 5 cut(s) 158, 211, 503, 540, 1268
MmeI TCCRAC 6 cut(s) 162, 361, 411, 1187, 1322, 1339
Mox20I TGGCCA 1 cut(s) 890
MroXI GAANNNNTTC 1 cut(s) 815
MscI TGGCCA 1 cut(s) 890
MseI TTAA 2 cut(s) 878, 1146
MslI CAYNNNNRTG 1 cut(s) 896
Msp20I TGGCCA 1 cut(s) 890
MspA1I CMGCKG 1 cut(s) 617
MvaI CCWGG 5 cut(s) 149, 437, 806, 1306, 1312
MvnI CGCG 3 cut(s) 285, 617, 725
MwoI GCNNNNNNNGC 9 cut(s) 18, 187, 313, 346, 603, 988, 997, 1105, 1130
NdeII GATC 5 cut(s) 129, 383, 484, 695, 1008
NlaIII CATG 2 cut(s) 1015, 1341
NmeAIII GCCGAG 2 cut(s) 89, 211
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 1 cut(s) 1341
PcsI WCGNNNNNNNCGW 3 cut(s) 228, 276, 387
PdmI GAANNNNTTC 1 cut(s) 815
PfeI GAWTC 1 cut(s) 1027
PflFI GACNNNGTC 2 cut(s) 275, 530
PfoI TCCNGGA 1 cut(s) 733
PinAI ACCGGT 2 cut(s) 660, 703
PkrI GCNGC 4 cut(s) 239, 596, 599, 1101
PleI GAGTC 5 cut(s) 158, 211, 503, 539, 1267
PpsI GAGTC 5 cut(s) 158, 211, 503, 539, 1267
Psp124BI GAGCTC 2 cut(s) 192, 637
Psp6I CCWGG 5 cut(s) 147, 435, 804, 1304, 1310
PspGI CCWGG 5 cut(s) 147, 435, 804, 1304, 1310
PspOMI GGGCCC 1 cut(s) 776
PstI CTGCAG 1 cut(s) 216
PsuI RGATCY 3 cut(s) 383, 484, 695
PsyI GACNNNGTC 2 cut(s) 275, 530
RsaI GTAC 3 cut(s) 1016, 1058, 1354
RsaNI GTAC 3 cut(s) 1015, 1057, 1353
RseI CAYNNNNRTG 1 cut(s) 896
SacI GAGCTC 2 cut(s) 192, 637
SacII CCGCGG 1 cut(s) 618
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 878, 1146
SatI GCNGC 4 cut(s) 238, 595, 598, 1100
Sau3AI GATC 5 cut(s) 129, 383, 484, 695, 1008
SchI GAGTC 5 cut(s) 158, 211, 503, 540, 1268
SduI GDGCHC 4 cut(s) 192, 637, 780, 930
SfaNI GCATC 3 cut(s) 21, 32, 1335
SfcI CTRYAG 2 cut(s) 212, 480
Sfr303I CCGCGG 1 cut(s) 618
SgrBI CCGCGG 1 cut(s) 618
SinI GGWCC 6 cut(s) 439, 706, 737, 767, 976, 1140
SmaI CCCGGG 3 cut(s) 325, 377, 494
SmiMI CAYNNNNRTG 1 cut(s) 896
SmlI CTYRAG 1 cut(s) 1125
SmoI CTYRAG 1 cut(s) 1125
Sse9I AATT 3 cut(s) 874, 1322, 1366
SstI GAGCTC 2 cut(s) 192, 637
TaaI ACNGT 3 cut(s) 934, 1282, 1357
TaiI ACGT 1 cut(s) 366
TaqI TCGA 8 cut(s) 162, 195, 222, 279, 291, 318, 546, 1182
TasI AATT 3 cut(s) 874, 1322, 1366
TatI WGTACW 2 cut(s) 1014, 1056
TauI GCSGC 2 cut(s) 240, 597
TfiI GAWTC 1 cut(s) 1027
Tru1I TTAA 2 cut(s) 878, 1146
Tru9I TTAA 2 cut(s) 878, 1146
TscAI CASTG 3 cut(s) 412, 898, 937
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 2 cut(s) 597, 1099
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 2 cut(s) 808, 1107
TspGWI ACGGA 8 cut(s) 133, 502, 543, 559, 989, 1132, 1204, 1214
TspMI CCCGGG 3 cut(s) 323, 375, 492
TspRI CASTG 3 cut(s) 412, 898, 937
Tth111I GACNNNGTC 2 cut(s) 275, 530
VpaK11BI GGWCC 6 cut(s) 439, 706, 737, 767, 976, 1140
XapI RAATTY 2 cut(s) 874, 1366
XceI RCATGY 1 cut(s) 1341
XcmI CCANNNNNNNNNTGG 2 cut(s) 145, 1117
XmaI CCCGGG 3 cut(s) 323, 375, 492
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.