Rh6AG005000

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000184
Physical Location & Seq
Forward (+)
716600 .. 717109
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG005000.1

Sequence Viewer

Length: 510 bp
ATGGCCGAAATCCAAAGCTCACCAGATCTGCCATGGACCGTCCGCCTCTTCGTCTCCGCCGCTTCCTTCGCAGCCGACGCCTCTCGCCGCTCAAACTTCACCGTCAACCGTCGCCTCTTTAACTTGTTCGACTACAAACCATCTCCCTTAACAAAACCTCACAAAAACCTCAAGAGCTCTGACGTCGTCGTCTCCGCCGACCCTTCCCGCAACCTCTGGTTTCGCCTCTACACTCCCACCGCCGCTACCACCAAGCTCCCCATCATCATCTTCTTCCACGGCGGCGGGTTCGCCTTCATGTCAGCCGCTTCAAAACCCTACGACGACTTCTGTCAACACCTCGCTCGCAAGATCCCAGCCGTCGTCGTCTCAGTCAACTACCGCCTCGCGCCGGAGCATCGGTATCTGTGCCAGTACGACGACGGTTTCGACGTCCTCAAAGCAGCTTGTTCGAGAGCGCGAATCTCGGGCAGTGTTTTCTGGCAGGGGACAGCTCCGACGGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

169

Amino Acids

18.84

Weight (kDa)

9.67

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 72 - 130 1.6e-08 Carboxylesterase family
BD-FAE PF20434 76 - 141 2.9e-06 BD-FAE
Abhydrolase_3 PF07859 89 - 153 1.4e-20 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AatII GACGTC 2 cut(s) 186, 435
AccBSI CCGCTC 1 cut(s) 90
AccII CGCG 2 cut(s) 389, 460
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 3 cut(s) 78, 183, 432
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 1 cut(s) 312
AluBI AGCT 5 cut(s) 18, 177, 256, 446, 494
AluI AGCT 5 cut(s) 18, 177, 256, 446, 494
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 3 cut(s) 58, 196, 373
AlwI GGATC 1 cut(s) 346
Ama87I CYCGRG 1 cut(s) 466
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 71, 443
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AspLEI GCGC 2 cut(s) 391, 460
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 12, 91
AvaI CYCGRG 1 cut(s) 466
AvaII GGWCC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 83, 455
BccI CCATC 2 cut(s) 148, 269
BceAI ACGGC 2 cut(s) 295, 344
BcgI CGANNNNNNTGC 2 cut(s) 432, 466
BcoDI GTCTC 3 cut(s) 58, 196, 373
BglII AGATCT 1 cut(s) 25
BisI GCNGC 7 cut(s) 60, 72, 88, 243, 283, 306, 444
BlsI GCNGC 7 cut(s) 61, 73, 89, 244, 284, 307, 445
Bme18I GGWCC 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 406
BoxI GACNNNNGTC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 155
BsaHI GRCGYC 3 cut(s) 78, 183, 432
BsaJI CCNNGG 2 cut(s) 32, 277
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 32, 277
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 412
BseXI GCAGC 2 cut(s) 83, 455
BseYI CCCAGC 1 cut(s) 355
Bsh1236I CGCG 2 cut(s) 389, 460
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 466
BsiSI CCGG 1 cut(s) 392
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 3 cut(s) 58, 196, 373
BsmBI CGTCTC 3 cut(s) 58, 196, 373
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 466
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 25, 351
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 383
BspFNI CGCG 2 cut(s) 389, 460
BspPI GGATC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 32, 277
BssMI GATC 2 cut(s) 25, 351
BssNI GRCGYC 3 cut(s) 78, 183, 432
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 4 cut(s) 40, 103, 110, 425
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 3 cut(s) 78, 183, 432
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 370
BstDSI CCRYGG 2 cut(s) 32, 277
BstFNI CGCG 2 cut(s) 389, 460
BstHHI GCGC 2 cut(s) 391, 460
BstKTI GATC 2 cut(s) 28, 354
BstMAI GTCTC 3 cut(s) 58, 196, 373
BstMBI GATC 2 cut(s) 25, 351
BstMWI GCNNNNNNNGC 2 cut(s) 68, 77
BstPAI GACNNNNGTC 1 cut(s) 330
BstUI CGCG 2 cut(s) 389, 460
BstV1I GCAGC 2 cut(s) 83, 455
BstX2I RGATCY 2 cut(s) 25, 351
BstYI RGATCY 2 cut(s) 25, 351
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 32, 277
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 346
CfoI GCGC 2 cut(s) 391, 460
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 415
CviAII CATG 2 cut(s) 33, 298
CviJI RGCY 9 cut(s) 5, 18, 74, 177, 256, 305, 359, 446, 494
CviKI_1 RGCY 9 cut(s) 5, 18, 74, 177, 256, 305, 359, 446, 494
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 1 cut(s) 370
DpnI GATC 2 cut(s) 27, 353
DpnII GATC 2 cut(s) 25, 351
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 3 cut(s) 32, 46, 184
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 466
EcoICRI GAGCTC 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 3 cut(s) 58, 196, 373
FaeI CATG 2 cut(s) 36, 301
FaiI YATR 3 cut(s) 34, 299, 508
FaqI GGGAC 1 cut(s) 502
FatI CATG 2 cut(s) 32, 297
FauI CCCGC 2 cut(s) 215, 278
Fnu4HI GCNGC 7 cut(s) 60, 72, 88, 243, 283, 306, 444
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 7 cut(s) 60, 72, 88, 243, 283, 306, 444
GlaI GCGC 2 cut(s) 390, 459
GluI GCNGC 7 cut(s) 60, 72, 88, 243, 283, 306, 444
GsaI CCCAGC 1 cut(s) 359
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 392
HgaI GACGC 1 cut(s) 86
HhaI GCGC 2 cut(s) 391, 460
Hin1I GRCGYC 3 cut(s) 78, 183, 432
Hin1II CATG 2 cut(s) 36, 301
Hin6I GCGC 2 cut(s) 389, 458
HinP1I GCGC 2 cut(s) 389, 458
HincII GTYRAC 3 cut(s) 106, 335, 376
HindII GTYRAC 3 cut(s) 106, 335, 376
HinfI GANTC 1 cut(s) 462
HpaII CCGG 1 cut(s) 392
HphI GGTGA 2 cut(s) 12, 91
Hpy166II GTNNAC 3 cut(s) 106, 335, 376
Hpy188I TCNGA 2 cut(s) 181, 498
Hpy188III TCNNGA 2 cut(s) 172, 453
Hpy8I GTNNAC 3 cut(s) 106, 335, 376
HpyAV CCTTC 3 cut(s) 76, 213, 304
HpyCH4III ACNGT 4 cut(s) 40, 103, 110, 425
HpyCH4IV ACGT 2 cut(s) 183, 432
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 77
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 2 cut(s) 183, 432
Hsp92I GRCGYC 3 cut(s) 78, 183, 432
Hsp92II CATG 2 cut(s) 36, 301
HspAI GCGC 2 cut(s) 389, 458
Kzo9I GATC 2 cut(s) 25, 351
LmnI GCTCC 3 cut(s) 261, 394, 499
LpnPI CCDG 7 cut(s) 36, 202, 369, 405, 425, 466, 470
Lsp1109I GCAGC 2 cut(s) 83, 455
LweI GCATC 1 cut(s) 406
MaeII ACGT 2 cut(s) 183, 432
MalI GATC 2 cut(s) 27, 353
MbiI CCGCTC 1 cut(s) 90
MboI GATC 2 cut(s) 25, 351
MboII GAAGA 3 cut(s) 40, 262, 265
MflI RGATCY 2 cut(s) 25, 351
MhlI GDGCHC 1 cut(s) 179
MseI TTAA 2 cut(s) 120, 149
MspI CCGG 1 cut(s) 392
MvnI CGCG 2 cut(s) 389, 460
MwoI GCNNNNNNNGC 2 cut(s) 68, 77
NcoI CCATGG 1 cut(s) 32
NdeII GATC 2 cut(s) 25, 351
NlaIII CATG 2 cut(s) 36, 301
PcsI WCGNNNNNNNCGW 3 cut(s) 195, 426, 429
PfeI GAWTC 1 cut(s) 462
PflFI GACNNNGTC 1 cut(s) 185
PkrI GCNGC 7 cut(s) 61, 73, 89, 244, 284, 307, 445
PshAI GACNNNNGTC 1 cut(s) 330
Psp124BI GAGCTC 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 2 cut(s) 25, 351
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 120, 149
SatI GCNGC 7 cut(s) 60, 72, 88, 243, 283, 306, 444
Sau3AI GATC 2 cut(s) 25, 351
Sau96I GGNCC 1 cut(s) 36
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 1 cut(s) 406
SinI GGWCC 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 179
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 4 cut(s) 40, 103, 110, 425
TaiI ACGT 2 cut(s) 186, 435
TaqI TCGA 3 cut(s) 129, 429, 452
TauI GCSGC 5 cut(s) 62, 90, 245, 285, 308
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 2 cut(s) 120, 149
Tru9I TTAA 2 cut(s) 120, 149
TscAI CASTG 1 cut(s) 478
TseI GCWGC 2 cut(s) 71, 443
TspDTI ATGAA 1 cut(s) 286
TspRI CASTG 1 cut(s) 478
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 36
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
ZraI GACGTC 2 cut(s) 184, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.