RchiOBHm_Chr6g0250271

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000184
Physical Location & Seq
Forward (+)
5867373 .. 5867741
369 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22434

Sequence Viewer

Length: 366 bp
ATGCAAAGCGTACTCGTCAAGTGGAAGCAAAGTCGTGCACACGGCGATCGTCAATTTGTCATCAATCCATCTCCCTTAACAAAACCTCACAAAAACGCCCGCAACCTCTGGTTTCGCCTCTACACTCCCACCGCCGCTACCACCAAGCTCCCCATCATCATCTTCTTCCACGGCGGCGGGTTCGCCTTCATGTCCGCCGCTTCAAAACCCTACGACGACTTCTGTCAACGCCTCGCTCGCGAGATCCCCGCCGTCGTCGTCTCCGTCAACTACGACGACGGTTTCGACGTCCTCAAAGCAGCTTGTTCGAGGGCGCGAATCTCGGGTAGTGTTTTCTGGCCGGGGACAGCTCCGGCGGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

121

Amino Acids

13.39

Weight (kDa)

10.02

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 36 - 91 1.6e-06 Carboxylesterase family
Abhydrolase_3 PF07859 53 - 92 1.4e-09 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
AccII CGCG 2 cut(s) 240, 316
AciI CCGC 9 cut(s) 100, 132, 135, 174, 177, 195, 198, 249, 356
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 204
AluBI AGCT 3 cut(s) 148, 302, 350
AluI AGCT 3 cut(s) 148, 302, 350
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 265
Alw44I GTGCAC 1 cut(s) 36
AlwI GGATC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 1 cut(s) 338
ApaLI GTGCAC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 299
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspLEI GCGC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 342
AvaI CYCGRG 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 311
BccI CCATC 2 cut(s) 76, 161
BceAI ACGGC 3 cut(s) 58, 187, 236
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 265
BisI GCNGC 4 cut(s) 135, 175, 198, 300
BlsI GCNGC 4 cut(s) 136, 176, 199, 301
Bme1390I CCNGG 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 342
BoxI GACNNNNGTC 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 169, 341
BseDI CCNNGG 2 cut(s) 169, 341
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 1 cut(s) 311
Bsh1236I CGCG 2 cut(s) 240, 316
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 340
BsiEI CGRYCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 341, 353
BslFI GGGAC 1 cut(s) 358
BsmAI GTCTC 1 cut(s) 265
BsmBI CGTCTC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 2 cut(s) 46, 243
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 9 cut(s) 100, 132, 135, 174, 177, 195, 198, 249, 356
BspANI GGCC 1 cut(s) 340
BspFNI CGCG 2 cut(s) 240, 316
BspPI GGATC 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 169, 341
BssMI GATC 2 cut(s) 46, 243
BssNI GRCGYC 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 100, 238
BstDSI CCRYGG 1 cut(s) 169
BstFNI CGCG 2 cut(s) 240, 316
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 2 cut(s) 49, 246
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 2 cut(s) 46, 243
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstPAI GACNNNNGTC 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 340
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 2 cut(s) 240, 316
BstV1I GCAGC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 1 cut(s) 340
BtgI CCRYGG 1 cut(s) 169
BtuMI TCGCGA 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 100, 238
CfoI GCGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 190
CviJI RGCY 4 cut(s) 148, 302, 340, 350
CviKI_1 RGCY 4 cut(s) 148, 302, 340, 350
CviQI GTAC 1 cut(s) 11
DpnI GATC 2 cut(s) 48, 245
DpnII GATC 2 cut(s) 46, 243
EaeI YGGCCR 1 cut(s) 338
EciI GGCGGA 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 191, 364
FaqI GGGAC 1 cut(s) 358
FatI CATG 1 cut(s) 189
FauI CCCGC 4 cut(s) 107, 170, 256, 349
Fnu4HI GCNGC 4 cut(s) 135, 175, 198, 300
Fsp4HI GCNGC 4 cut(s) 135, 175, 198, 300
GlaI GCGC 1 cut(s) 315
GluI GCNGC 4 cut(s) 135, 175, 198, 300
HaeIII GGCC 1 cut(s) 340
HapII CCGG 2 cut(s) 341, 353
HhaI GCGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HincII GTYRAC 2 cut(s) 227, 268
HindII GTYRAC 2 cut(s) 227, 268
HinfI GANTC 1 cut(s) 318
HpaII CCGG 2 cut(s) 341, 353
Hpy166II GTNNAC 3 cut(s) 38, 227, 268
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 3 cut(s) 38, 227, 268
Hpy99I CGWCG 6 cut(s) 218, 257, 260, 278, 281, 290
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 2 cut(s) 4, 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 314
Kzo9I GATC 2 cut(s) 46, 243
LmnI GCTCC 2 cut(s) 153, 355
LpnPI CCDG 3 cut(s) 94, 322, 354
Lsp1109I GCAGC 1 cut(s) 311
MaeII ACGT 1 cut(s) 288
MalI GATC 2 cut(s) 48, 245
MboI GATC 2 cut(s) 46, 243
MboII GAAGA 2 cut(s) 154, 157
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 1 cut(s) 53
MnlI CCTC 6 cut(s) 96, 116, 128, 242, 302, 303
MseI TTAA 1 cut(s) 77
MspI CCGG 2 cut(s) 341, 353
MspR9I CCNGG 1 cut(s) 342
MvnI CGCG 2 cut(s) 240, 316
MwoI GCNNNNNNNGC 1 cut(s) 237
NciI CCSGG 1 cut(s) 342
NdeII GATC 2 cut(s) 46, 243
NlaIII CATG 1 cut(s) 193
NruI TCGCGA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 3 cut(s) 261, 282, 285
PfeI GAWTC 1 cut(s) 318
PkrI GCNGC 4 cut(s) 136, 176, 199, 301
Ple19I CGATCG 1 cut(s) 49
PshAI GACNNNNGTC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 243
PvuI CGATCG 1 cut(s) 49
RruI TCGCGA 1 cut(s) 240
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 4 cut(s) 135, 175, 198, 300
Sau3AI GATC 2 cut(s) 46, 243
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 40
SetI ASST 6 cut(s) 88, 108, 150, 291, 304, 352
Sse9I AATT 1 cut(s) 53
SsiI CCGC 9 cut(s) 100, 132, 135, 174, 177, 195, 198, 249, 356
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 285, 308
TasI AATT 1 cut(s) 53
TauI GCSGC 3 cut(s) 137, 177, 200
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 253
VneI GTGCAC 1 cut(s) 36
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.