Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003627.1

Orthogroup ID

OG0000184

Physical Location & Seq

Genomic Coordinates Reverse (-)

67866 .. 68435

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003627.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgagcttcctcgacttatgctcctccgccactccctcaaccccctacaaaggcgtcaccacctctgacgtcaccgtcgaccaaacccgcaacctctggttcctcttcttcgtcccttctacgacgtcgtcttcccccgcttctttacccgtcgtcgttttcttccacggcggcggcttcagctttctcagccccgactcctacgcctacgacgccgtctgccgcaaattggccctcgaaatccccgccgtcgtagtctccgtcaactaccacctctccccagagcacggctacccctgccagtacgacgacggcctcgacaaattcctcgaccaaaaccccgactccctcctcgacctcgctgactgctcccgctgcttcctcgccggagacagcgccgacgcgaacattgcccactccgtggcggtgcgagcctgcagcgagccgtttcgggttgtgaaaccaatcgggttgatatcgatccagaaacccagtggctttcttgagactgtggaaggctttcttgccacaaaacccagaaacccggtggcttcattgagactgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

189

Amino Acids

20.47

Weight (kDa)

5.23

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23530
fragaria_vesca	FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica	MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica	Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis	pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis	RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata	RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora	Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii	Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa	Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha	Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana	Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	2 cut(s)	72, 128
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	404
AciI	CCGC	9 cut(s)	27, 88, 138, 171, 174, 223, 246, 373, 425
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	163
AcyI	GRCGYC	4 cut(s)	54, 69, 125, 213
AdeI	CACNNNGTG	1 cut(s)	421
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	4 cut(s)	50, 229, 287, 421
AluBI	AGCT	2 cut(s)	6, 183
AluI	AGCT	2 cut(s)	6, 183
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	4 cut(s)	262, 384, 500, 553
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	2 cut(s)	231, 313
ApeKI	GCWGC	2 cut(s)	375, 438
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	49, 64
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	362, 450
BceAI	ACGGC	6 cut(s)	184, 200, 233, 304, 328, 430
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	4 cut(s)	262, 384, 500, 553
BfmI	CTRYAG	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	399
BisI	GCNGC	5 cut(s)	172, 175, 223, 376, 439
BlsI	GCNGC	5 cut(s)	173, 176, 224, 377, 440
Bme1390I	CCNGG	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	545
BmrI	ACTGGG	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	545
Bsa29I	ATCGAT	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	479
BsaHI	GRCGYC	4 cut(s)	54, 69, 125, 213
BsaJI	CCNNGG	2 cut(s)	166, 420
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 260, 290, 329, 359
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 229, 287, 421
Bse1I	ACTGG	2 cut(s)	301, 492
Bse3DI	GCAATG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	479
BseCI	ATCGAT	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	166, 420
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	4 cut(s)	50, 229, 287, 421
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	202, 554
BseNI	ACTGG	2 cut(s)	301, 492
BseRI	GAGGAG	2 cut(s)	13, 341
BseXI	GCAGC	2 cut(s)	362, 450
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	233, 315
BshVI	ATCGAT	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	387, 545
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	4 cut(s)	50, 229, 287, 421
BsmAI	GTCTC	4 cut(s)	262, 384, 500, 553
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	233, 315
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	9 cut(s)	27, 88, 138, 171, 174, 223, 246, 373, 425
BspANI	GGCC	2 cut(s)	233, 315
BspCNI	CTCAG	2 cut(s)	201, 555
BspDI	ATCGAT	1 cut(s)	479
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	101
BspMAI	CTGCAG	1 cut(s)	440
BspPI	GGATC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	301, 492
BssECI	CCNNGG	2 cut(s)	166, 420
BssMI	GATC	1 cut(s)	480
BssNI	GRCGYC	4 cut(s)	54, 69, 125, 213
Bst4CI	ACNGT	2 cut(s)	76, 511
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	4 cut(s)	54, 69, 125, 213
BstC8I	GCNNGC	3 cut(s)	432, 436, 443
BstDEI	CTNAG	2 cut(s)	188, 563
BstDSI	CCRYGG	2 cut(s)	166, 420
BstFNI	CGCG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	1 cut(s)	483
BstMAI	GTCTC	4 cut(s)	262, 384, 500, 553
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	7 cut(s)	180, 189, 212, 297, 375, 410, 431
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	362, 450
BstV2I	GAAGAC	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	233, 315
BsuTUI	ATCGAT	1 cut(s)	479
BtgI	CCRYGG	2 cut(s)	166, 420
BtsIMutI	CAGTG	1 cut(s)	499
Cac8I	GCNNGC	3 cut(s)	432, 436, 443
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	479
CseI	GACGC	3 cut(s)	43, 221, 410
Csp6I	GTAC	1 cut(s)	304
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	2 cut(s)	188, 563
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
DraIII	CACNNNGTG	1 cut(s)	421
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	477
FaiI	YATR	1 cut(s)	19
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	1 cut(s)	98
FauI	CCCGC	4 cut(s)	95, 145, 253, 380
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	5 cut(s)	172, 175, 223, 376, 439
Fsp4HI	GCNGC	5 cut(s)	172, 175, 223, 376, 439
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	5 cut(s)	172, 175, 223, 376, 439
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	233, 315
HapII	CCGG	2 cut(s)	387, 545
HgaI	GACGC	3 cut(s)	43, 221, 410
HhaI	GCGC	1 cut(s)	398
Hin1I	GRCGYC	4 cut(s)	54, 69, 125, 213
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HincII	GTYRAC	2 cut(s)	79, 265
HindII	GTYRAC	2 cut(s)	79, 265
HinfI	GANTC	2 cut(s)	197, 344
HpaII	CCGG	2 cut(s)	387, 545
HphI	GGTGA	2 cut(s)	49, 64
Hpy166II	GTNNAC	2 cut(s)	79, 265
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	484, 503
Hpy8I	GTNNAC	2 cut(s)	79, 265
HpyAV	CCTTC	2 cut(s)	126, 509
HpyCH4III	ACNGT	2 cut(s)	76, 511
HpyCH4IV	ACGT	2 cut(s)	69, 125
HpyCH4V	TGCA	1 cut(s)	438
HpyF10VI	GCNNNNNNNGC	7 cut(s)	180, 189, 212, 297, 375, 410, 431
HpyF3I	CTNAG	2 cut(s)	188, 563
HpySE526I	ACGT	2 cut(s)	69, 125
Hsp92I	GRCGYC	4 cut(s)	54, 69, 125, 213
HspAI	GCGC	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	480
LmnI	GCTCC	2 cut(s)	26, 374
Lsp1109I	GCAGC	2 cut(s)	362, 450
MaeII	ACGT	2 cut(s)	69, 125
MaeIII	GTNAC	2 cut(s)	55, 70
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	4 cut(s)	97, 100, 123, 154
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	2 cut(s)	227, 323
MlyI	GAGTC	2 cut(s)	191, 338
MroXI	GAANNNNTTC	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	2 cut(s)	387, 545
MspR9I	CCNGG	1 cut(s)	545
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	7 cut(s)	180, 189, 212, 297, 375, 410, 431
NciI	CCSGG	1 cut(s)	545
NdeII	GATC	1 cut(s)	480
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	2 cut(s)	55, 70
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 258, 315
PdmI	GAANNNNTTC	1 cut(s)	519
PflFI	GACNNNGTC	2 cut(s)	127, 215
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	5 cut(s)	173, 176, 224, 377, 440
PleI	GAGTC	2 cut(s)	191, 338
PpsI	GAGTC	2 cut(s)	191, 338
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	440
PsyI	GACNNNGTC	2 cut(s)	127, 215
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	5 cut(s)	172, 175, 223, 376, 439
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	2 cut(s)	191, 338
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	9 cut(s)	8, 65, 72, 96, 128, 185, 276, 360, 569
SfcI	CTRYAG	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	2 cut(s)	227, 323
SsiI	CCGC	9 cut(s)	27, 88, 138, 171, 174, 223, 246, 373, 425
StyD4I	CCNGG	1 cut(s)	543
TaaI	ACNGT	2 cut(s)	76, 511
TaiI	ACGT	2 cut(s)	72, 128
TaqI	TCGA	7 cut(s)	12, 78, 237, 318, 330, 354, 479
TasI	AATT	2 cut(s)	227, 323
TauI	GCSGC	3 cut(s)	174, 177, 225
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	2 cut(s)	55, 70
TseI	GCWGC	2 cut(s)	375, 438
Tsp45I	GTSAC	2 cut(s)	55, 70
TspDTI	ATGAA	1 cut(s)	543
TspGWI	ACGGA	2 cut(s)	250, 409
TspRI	CASTG	1 cut(s)	499
Tth111I	GACNNNGTC	2 cut(s)	127, 215
Van91I	CCANNNNNTGG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	2 cut(s)	491, 544
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	519
ZraI	GACGTC	2 cut(s)	70, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.