Rmu_co8274775.1_g000001

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8274775.1
OG0000184
Physical Location & Seq
Forward (+)
1 .. 510
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8274775.1_g000001.1.cds

Sequence Viewer

Length: 510 bp
tgctttctggccggggacagcgccggcgggaacatagcgcaccacgtggcgatcagagccagcgggcacgagttccggcacgtaaaggtggtcggcatgttggcgattcagccgtttttcggcggagaagagcggacggaatcggagacgagactgacaaatatgccgctggtgaacatagagcggacggactggatgtggaaggcgtttttgccggaggggtcggatcgggaccatccggtggcgaatgtgttcgggccgaacgcagtggatatatcgggggtggattttccggcgacggttgtgattgttgggggattggatccgttgcaagattggcagaagaggtactacgagggattgaaaaaacgcgggaaacaagcggagctggtggtgtttccgaatgcaattcacactttctatggttttcccgagttggatgactcttctgtgtttattcacaaagtcagggatttcgtacaagcgcatgcaactgaaactcaacattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

169

Amino Acids

18.87

Weight (kDa)

5.81

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 241
AccBSI CCGCTC 2 cut(s) 133, 184
AccII CGCG 1 cut(s) 372
AciI CCGC 8 cut(s) 27, 63, 123, 133, 167, 184, 372, 383
AclWI GGATC 3 cut(s) 234, 317, 330
AcoI YGGCCR 1 cut(s) 9
AcvI CACGTG 1 cut(s) 46
AdeI CACNNNGTG 1 cut(s) 46
AfaI GTAC 2 cut(s) 350, 480
AfiI CCNNNNNNNGG 2 cut(s) 119, 241
AgsI TTSAA 1 cut(s) 364
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
Alw26I GTCTC 2 cut(s) 140, 145
AlwI GGATC 3 cut(s) 234, 317, 330
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 2 cut(s) 9, 257
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 3 cut(s) 23, 40, 487
AspS9I GGNCC 2 cut(s) 232, 257
AsuC2I CCSGG 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 184
AvaI CYCGRG 1 cut(s) 431
AvaII GGWCC 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 69
BamHI GGATCC 1 cut(s) 322
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BauI CACGAG 1 cut(s) 68
BbrPI CACGTG 1 cut(s) 46
BccI CCATC 1 cut(s) 243
BceAI ACGGC 1 cut(s) 97
BcnI CCSGG 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 140, 145
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 2 cut(s) 232, 257
BmiI GGNNCC 2 cut(s) 233, 324
BmrFI CCNGG 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 13
BsaAI YACGTR 2 cut(s) 46, 82
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 241
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 3 cut(s) 201, 235, 445
BseLI CCNNNNNNNGG 2 cut(s) 119, 241
BseNI ACTGG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 2 cut(s) 11, 259
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 6 cut(s) 12, 24, 76, 215, 239, 293
BslFI GGGAC 2 cut(s) 29, 245
BslI CCNNNNNNNGG 2 cut(s) 119, 241
BsmAI GTCTC 2 cut(s) 140, 145
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 2 cut(s) 29, 245
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 2 cut(s) 11, 259
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 51, 226, 322
BspACI CCGC 8 cut(s) 27, 63, 123, 133, 167, 184, 372, 383
BspANI GGCC 2 cut(s) 11, 259
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 2 cut(s) 233, 324
BspPI GGATC 3 cut(s) 234, 317, 330
BspQI GCTCTTC 1 cut(s) 123
BsrBI CCGCTC 2 cut(s) 133, 184
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 3 cut(s) 51, 226, 322
BssSI CACGAG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 3 cut(s) 123, 338, 451
BstBAI YACGTR 2 cut(s) 46, 82
BstC8I GCNNGC 4 cut(s) 25, 61, 65, 489
BstF5I GGATG 3 cut(s) 201, 235, 445
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 3 cut(s) 23, 40, 487
BstKTI GATC 3 cut(s) 54, 229, 325
BstMAI GTCTC 2 cut(s) 140, 145
BstMBI GATC 3 cut(s) 51, 226, 322
BstMWI GCNNNNNNNGC 2 cut(s) 56, 337
BstNSI RCATGY 2 cut(s) 100, 491
BstSCI CCNGG 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 69
BstUI CGCG 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 2 cut(s) 11, 259
BtsCI GGATG 3 cut(s) 201, 235, 445
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 4 cut(s) 25, 61, 65, 489
CfoI GCGC 3 cut(s) 23, 40, 487
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 232, 257
Csp6I GTAC 2 cut(s) 349, 479
CviAII CATG 2 cut(s) 97, 488
CviJI RGCY 5 cut(s) 11, 59, 112, 259, 388
CviKI_1 RGCY 5 cut(s) 11, 59, 112, 259, 388
CviQI GTAC 2 cut(s) 349, 479
DpnI GATC 3 cut(s) 53, 228, 324
DpnII GATC 3 cut(s) 51, 226, 322
DraIII CACNNNGTG 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 3 cut(s) 123, 338, 451
EarI CTCTTC 3 cut(s) 123, 338, 451
EciI GGCGGA 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 232
Eco72I CACGTG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 431
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 2 cut(s) 100, 491
FaiI YATR 7 cut(s) 35, 98, 164, 179, 275, 423, 489
FaqI GGGAC 2 cut(s) 29, 245
FatI CATG 2 cut(s) 96, 487
FauI CCCGC 3 cut(s) 20, 56, 365
Fnu4HI GCNGC 1 cut(s) 167
FokI GGATG 3 cut(s) 208, 222, 452
Fsp4HI GCNGC 1 cut(s) 167
GlaI GCGC 3 cut(s) 22, 39, 486
GluI GCNGC 1 cut(s) 167
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 2 cut(s) 11, 259
HapII CCGG 6 cut(s) 12, 24, 76, 215, 239, 293
HhaI GCGC 3 cut(s) 23, 40, 487
Hin1II CATG 2 cut(s) 100, 491
Hin6I GCGC 3 cut(s) 21, 38, 485
HinP1I GCGC 3 cut(s) 21, 38, 485
HinfI GANTC 3 cut(s) 106, 140, 443
HpaII CCGG 6 cut(s) 12, 24, 76, 215, 239, 293
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 4 cut(s) 56, 145, 226, 402
Hpy188III TCNNGA 2 cut(s) 230, 431
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 2 cut(s) 45, 81
HpyCH4V TGCA 3 cut(s) 331, 407, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 337
HpySE526I ACGT 2 cut(s) 45, 81
Hsp92II CATG 2 cut(s) 100, 491
HspAI GCGC 3 cut(s) 21, 38, 485
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Kzo9I GATC 3 cut(s) 51, 226, 322
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 385
MaeII ACGT 2 cut(s) 45, 81
MalI GATC 3 cut(s) 53, 228, 324
MbiI CCGCTC 2 cut(s) 133, 184
MboI GATC 3 cut(s) 51, 226, 322
MboII GAAGA 3 cut(s) 140, 355, 438
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 1 cut(s) 408
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 2 cut(s) 204, 417
MnlI CCTC 3 cut(s) 211, 339, 349
MreI CGCCGGCG 1 cut(s) 23
MroNI GCCGGC 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 508
MspA1I CMGCKG 2 cut(s) 63, 169
MspI CCGG 6 cut(s) 12, 24, 76, 215, 239, 293
MspR9I CCNGG 1 cut(s) 13
Mva1269I GAATGC 1 cut(s) 409
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 56, 337
NaeI GCCGGC 1 cut(s) 25
NciI CCSGG 1 cut(s) 13
NdeII GATC 3 cut(s) 51, 226, 322
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 2 cut(s) 100, 491
NlaIV GGNNCC 2 cut(s) 233, 324
NspI RCATGY 2 cut(s) 100, 491
PaeI GCATGC 1 cut(s) 491
PciSI GCTCTTC 1 cut(s) 123
PctI GAATGC 1 cut(s) 409
PdiI GCCGGC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 106, 140
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 1 cut(s) 437
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
PpsI GAGTC 1 cut(s) 437
Ppu21I YACGTR 2 cut(s) 46, 82
PspCI CACGTG 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 233, 324
PspPI GGNCC 2 cut(s) 232, 257
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 2 cut(s) 350, 480
RsaNI GTAC 2 cut(s) 349, 479
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 508
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 3 cut(s) 51, 226, 322
Sau96I GGNCC 2 cut(s) 232, 257
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 69
SetI ASST 5 cut(s) 48, 84, 90, 350, 390
SgrAI CRCCGGYG 1 cut(s) 23
SinI GGWCC 1 cut(s) 232
SphI GCATGC 1 cut(s) 491
Sse9I AATT 1 cut(s) 408
SsiI CCGC 8 cut(s) 27, 63, 123, 133, 167, 184, 372, 383
StyD4I CCNGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 2 cut(s) 48, 84
TasI AATT 1 cut(s) 408
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 2 cut(s) 106, 140
Tru1I TTAA 1 cut(s) 508
Tru9I TTAA 1 cut(s) 508
TscAI CASTG 1 cut(s) 273
TspGWI ACGGA 3 cut(s) 152, 203, 315
TspRI CASTG 1 cut(s) 273
Van91I CCANNNNNTGG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 232
XceI RCATGY 2 cut(s) 100, 491
XmnI GAANNNNTTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.