Rroxscaffold_1G00028450

Steryl acetyl hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000184
Physical Location & Seq
Forward (+)
36247895 .. 36248645
751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028450.1

Sequence Viewer

Length: 567 bp
ATGGCGGGTAAGCACGAGTTTTTGAAGATGAAAGTGATTGGCATTATAGGGATACAACCGTTTTTTGGCGGGGAAGAAAGGACTGAATCGGAAACCCAGCTTAAAAACGCGTTGATACTCTCTCTGGAGATAACTGACTGGTACTGGAAGGCGTTTTTGCCGGTCGGGGAGGACAGAGACCACCCTTTGGTTAATGTATTCGGTCCCCGATCGGATGCTGTTCTTGGGATAAACTTTCCGGCATCGATTGTTTTCGTTGCTGGGTTTGATCCATTGAAAGACTGGCAAAAGAGATACTGCGAGGGGTTGACGAAAGCTGGAAAAGAAGTTTACATGGTCGAGTACCCGAATGCATTTCATGGATTTTACTGTTTTCCTCAGCTAAAGGAGTGGTCGTTATTAGTTGAGGAGGTGAAGGATTTTATTGAGAAGCAATCAGCTGCTCACCGGGGAGCTTCAAACGACAGCTTAGTCTGGCATTTCCACAAGACTACAAATAGTGCTTATTTTGTTGCTCGATTGAGACATTGCTTTGGGCTTAGTTTTGGCTCCTCCGGCGCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

188

Amino Acids

21.33

Weight (kDa)

6.38

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 10 - 123 2.3e-21 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 470
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 187
AccII CGCG 1 cut(s) 110
AciI CCGC 2 cut(s) 5, 69
AclWI GGATC 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 558
AfaI GTAC 2 cut(s) 143, 344
AfiI CCNNNNNNNGG 2 cut(s) 65, 187
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 3 cut(s) 25, 277, 459
AluBI AGCT 6 cut(s) 100, 317, 382, 440, 455, 468
AluI AGCT 6 cut(s) 100, 317, 382, 440, 455, 468
Alw26I GTCTC 2 cut(s) 171, 517
AlwI GGATC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 440
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 2 cut(s) 424, 437
AvaII GGWCC 1 cut(s) 203
BaeI ACNNNNGTAYC 2 cut(s) 44, 77
BanI GGYRCC 1 cut(s) 557
BauI CACGAG 1 cut(s) 14
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 427
BciVI GTATCC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 449
BcoDI GTCTC 2 cut(s) 171, 517
BfoI RGCGCY 1 cut(s) 561
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 449
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 3 cut(s) 205, 550, 559
BmrFI CCNGG 1 cut(s) 449
BmsI GCATC 2 cut(s) 205, 251
BpmI CTGGAG 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 449
Bsa29I ATCGAT 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 448
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 187
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 3 cut(s) 143, 149, 287
Bse3DI GCAATG 1 cut(s) 526
BseCI ATCGAT 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 2 cut(s) 65, 187
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 3 cut(s) 143, 149, 287
BseRI GAGGAG 2 cut(s) 422, 541
BseXI GCAGC 1 cut(s) 427
BseYI CCCAGC 2 cut(s) 96, 260
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 2 cut(s) 165, 212
BshNI GGYRCC 1 cut(s) 557
BshVI ATCGAT 1 cut(s) 245
BsiEI CGRYCG 2 cut(s) 165, 212
BsiSI CCGG 4 cut(s) 161, 239, 448, 555
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 65, 187
BsmAI GTCTC 2 cut(s) 171, 517
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 355
Bso31I GGTCTC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 209, 268
BspACI CCGC 2 cut(s) 5, 69
BspCNI CTCAG 1 cut(s) 391
BspDI ATCGAT 1 cut(s) 245
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 205, 550, 559
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 3 cut(s) 143, 149, 287
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 2 cut(s) 209, 268
BssNI GRCGYC 1 cut(s) 558
BssSI CACGAG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 14
Bst4CI ACNGT 2 cut(s) 60, 371
BstACI GRCGYC 1 cut(s) 558
BstDEI CTNAG 3 cut(s) 378, 469, 539
BstF5I GGATG 1 cut(s) 220
BstFNI CGCG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 2 cut(s) 212, 271
BstMAI GTCTC 2 cut(s) 171, 517
BstMBI GATC 2 cut(s) 209, 268
BstMCI CGRYCG 2 cut(s) 165, 212
BstMWI GCNNNNNNNGC 1 cut(s) 555
BstSCI CCNGG 1 cut(s) 447
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 245
BsuI GTATCC 1 cut(s) 45
BsuTUI ATCGAT 1 cut(s) 245
BtsCI GGATG 1 cut(s) 220
CfoI GCGC 1 cut(s) 560
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 245
Csp6I GTAC 2 cut(s) 142, 343
CviAII CATG 2 cut(s) 334, 359
CviJI RGCY 8 cut(s) 100, 317, 382, 440, 455, 468, 538, 549
CviKI_1 RGCY 8 cut(s) 100, 317, 382, 440, 455, 468, 538, 549
CviQI GTAC 2 cut(s) 142, 343
DdeI CTNAG 3 cut(s) 378, 469, 539
DinI GGCGCC 1 cut(s) 559
DpnI GATC 2 cut(s) 211, 270
DpnII GATC 2 cut(s) 209, 268
DrdI GACNNNNNNGTC 1 cut(s) 470
DseDI GACNNNNNNGTC 1 cut(s) 470
Eco31I GGTCTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 355
EgeI GGCGCC 1 cut(s) 559
EheI GGCGCC 1 cut(s) 559
FaeI CATG 2 cut(s) 337, 362
FaiI YATR 3 cut(s) 47, 335, 360
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 333, 358
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 441
GlaI GCGC 1 cut(s) 559
GluI GCNGC 1 cut(s) 441
GsaI CCCAGC 2 cut(s) 100, 264
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 561
HapII CCGG 4 cut(s) 161, 239, 448, 555
HhaI GCGC 1 cut(s) 560
Hin1I GRCGYC 1 cut(s) 558
Hin1II CATG 2 cut(s) 337, 362
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 1 cut(s) 86
HpaII CCGG 4 cut(s) 161, 239, 448, 555
HphI GGTGA 2 cut(s) 424, 437
Hpy166II GTNNAC 2 cut(s) 309, 331
Hpy188I TCNGA 2 cut(s) 91, 214
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 2 cut(s) 309, 331
HpyAV CCTTC 2 cut(s) 142, 409
HpyCH4III ACNGT 2 cut(s) 60, 371
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 555
HpyF3I CTNAG 3 cut(s) 378, 469, 539
Hsp92I GRCGYC 1 cut(s) 558
Hsp92II CATG 2 cut(s) 337, 362
HspAI GCGC 1 cut(s) 558
KasI GGCGCC 1 cut(s) 557
Kzo9I GATC 2 cut(s) 209, 268
LmnI GCTCC 2 cut(s) 452, 554
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 2 cut(s) 205, 251
MalI GATC 2 cut(s) 211, 270
MboI GATC 2 cut(s) 209, 268
MboII GAAGA 2 cut(s) 37, 86
MfeI CAATTG 1 cut(s) 562
MluCI AATT 1 cut(s) 562
MluI ACGCGT 1 cut(s) 108
Mly113I GGCGCC 1 cut(s) 558
MnlI CCTC 6 cut(s) 163, 295, 387, 400, 403, 562
Mph1103I ATGCAT 1 cut(s) 355
MseI TTAA 2 cut(s) 102, 192
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 4 cut(s) 161, 239, 448, 555
MspR9I CCNGG 1 cut(s) 449
MunI CAATTG 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 355
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 555
NarI GGCGCC 1 cut(s) 558
NciI CCSGG 1 cut(s) 449
NdeII GATC 2 cut(s) 209, 268
NlaIII CATG 2 cut(s) 337, 362
NlaIV GGNNCC 3 cut(s) 205, 550, 559
NsiI ATGCAT 1 cut(s) 355
PctI GAATGC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 1 cut(s) 442
Ple19I CGATCG 1 cut(s) 212
PluTI GGCGCC 1 cut(s) 561
PspFI CCCAGC 2 cut(s) 96, 260
PspN4I GGNNCC 3 cut(s) 205, 550, 559
PspPI GGNCC 1 cut(s) 203
PvuI CGATCG 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 143, 344
RsaNI GTAC 2 cut(s) 142, 343
SaqAI TTAA 2 cut(s) 102, 192
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 2 cut(s) 209, 268
Sau96I GGNCC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 449
SetI ASST 7 cut(s) 102, 319, 384, 414, 442, 457, 470
SfaNI GCATC 2 cut(s) 205, 251
SfoI GGCGCC 1 cut(s) 559
SinI GGWCC 1 cut(s) 203
Sse9I AATT 1 cut(s) 562
SsiI CCGC 2 cut(s) 5, 69
SspDI GGCGCC 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 447
TaaI ACNGT 2 cut(s) 60, 371
TaqI TCGA 3 cut(s) 245, 339, 517
TaqII GACCGA 1 cut(s) 191
TasI AATT 1 cut(s) 562
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 102, 192
Tru9I TTAA 2 cut(s) 102, 192
TseI GCWGC 1 cut(s) 440
TspDTI ATGAA 2 cut(s) 44, 347
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.