RchiOBHm_Chr6g0250261

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000184
Physical Location & Seq
Forward (+)
5862721 .. 5863173
453 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22433

Sequence Viewer

Length: 453 bp
ATGGCGATCAGAGAGAGCGAGCACAAGTTTCGGGATCTAAAGGTGGTCGGAATCTTGGCGATTCAGCCGTTTTTCGGCGGAGAGGAGCGGACGGAATCGGAGACGAGACTGAAGAGTGTGCCGCTGGTGAATGTAGAGCGGACGGACTGGATGTGGAAGGCGTTTTTGCAGGAGGGATCGGATCGGGACCACCCGGTGGTCAATGTGTTCGGGCCGAACGAGGTGGATATTTCGGGGGTTGATTTTCCGGAGACGATTGTGTTTGTTGGGGGATTTGATCCATTGCAGGATTGGCAGAAGAGGTACTACGAGGGATTGAAGAAACGGGGAACCAAGCGGAGCTGGTGGTGTTTCCAAATGCCATTCATACTTTCTATGCTTATACCGAGTTGGATGACTCTTCCGTGTTTATTAACAGAGTCAGAGATTTCGTACAAAACGCAATTAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

150

Amino Acids

17.5

Weight (kDa)

5.45

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 12 - 112 3.1e-16 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 196
AccBSI CCGCTC 2 cut(s) 88, 139
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 5 cut(s) 78, 88, 122, 139, 337
AclWI GGATC 4 cut(s) 42, 184, 189, 272
AcuI CTGAAG 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 305, 434
AfiI CCNNNNNNNGG 2 cut(s) 74, 196
AgsI TTSAA 1 cut(s) 319
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 3 cut(s) 95, 100, 245
AlwI GGATC 4 cut(s) 42, 184, 189, 272
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 187, 212
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 187
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
Bbv12I GWGCWC 1 cut(s) 24
BceAI ACGGC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 3 cut(s) 95, 100, 245
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 187, 212
BmiI GGNNCC 2 cut(s) 188, 331
BmrFI CCNGG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 196
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 281
BseAI TCCGGA 1 cut(s) 247
BseGI GGATG 2 cut(s) 156, 399
BseLI CCNNNNNNNGG 2 cut(s) 74, 196
BseMI GCAATG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 98
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 194, 248
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 74, 196
BsmAI GTCTC 3 cut(s) 95, 100, 245
BsmBI CGTCTC 2 cut(s) 95, 245
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 5 cut(s) 6, 34, 176, 181, 277
BspACI CCGC 5 cut(s) 78, 88, 122, 139, 337
BspANI GGCC 1 cut(s) 214
BspEI TCCGGA 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 188, 331
BspPI GGATC 4 cut(s) 42, 184, 189, 272
BsrBI CCGCTC 2 cut(s) 88, 139
BsrDI GCAATG 1 cut(s) 281
BsrI ACTGG 1 cut(s) 152
BssMI GATC 5 cut(s) 6, 34, 176, 181, 277
Bst6I CTCTTC 3 cut(s) 107, 293, 405
BstC8I GCNNGC 1 cut(s) 20
BstF5I GGATG 2 cut(s) 156, 399
BstKTI GATC 5 cut(s) 9, 37, 179, 184, 280
BstMAI GTCTC 3 cut(s) 95, 100, 245
BstMBI GATC 5 cut(s) 6, 34, 176, 181, 277
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 156, 399
Cac8I GCNNGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 187, 212
Csp6I GTAC 2 cut(s) 304, 433
CviJI RGCY 3 cut(s) 67, 214, 342
CviKI_1 RGCY 3 cut(s) 67, 214, 342
CviQI GTAC 2 cut(s) 304, 433
DpnI GATC 5 cut(s) 8, 36, 178, 183, 279
DpnII GATC 5 cut(s) 6, 34, 176, 181, 277
DraIII CACNNNGTG 1 cut(s) 196
Eam1104I CTCTTC 3 cut(s) 107, 293, 405
EarI CTCTTC 3 cut(s) 107, 293, 405
EciI GGCGGA 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 131
Esp3I CGTCTC 2 cut(s) 95, 245
FaiI YATR 3 cut(s) 368, 377, 383
FaqI GGGAC 1 cut(s) 200
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 2 cut(s) 163, 406
Fsp4HI GCNGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 122
HaeIII GGCC 1 cut(s) 214
HapII CCGG 2 cut(s) 194, 248
HinfI GANTC 5 cut(s) 51, 61, 95, 397, 419
HpaII CCGG 2 cut(s) 194, 248
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 5 cut(s) 11, 50, 100, 181, 424
Hpy188III TCNNGA 3 cut(s) 32, 185, 248
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 169, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 5 cut(s) 6, 34, 176, 181, 277
LmnI GCTCC 2 cut(s) 85, 339
LpnPI CCDG 7 cut(s) 110, 133, 155, 207, 261, 272, 328
MalI GATC 5 cut(s) 8, 36, 178, 183, 279
MbiI CCGCTC 2 cut(s) 88, 139
MboI GATC 5 cut(s) 6, 34, 176, 181, 277
MboII GAAGA 4 cut(s) 124, 310, 331, 392
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 1 cut(s) 443
MlyI GAGTC 2 cut(s) 391, 428
MmeI TCCRAC 2 cut(s) 28, 371
MnlI CCTC 5 cut(s) 76, 166, 214, 294, 304
MroI TCCGGA 1 cut(s) 247
MseI TTAA 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 2 cut(s) 194, 248
MspR9I CCNGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 292
NciI CCSGG 1 cut(s) 194
NdeII GATC 5 cut(s) 6, 34, 176, 181, 277
NlaIV GGNNCC 2 cut(s) 188, 331
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 3 cut(s) 51, 61, 95
PflMI CCANNNNNTGG 1 cut(s) 196
PkrI GCNGC 1 cut(s) 123
PleI GAGTC 2 cut(s) 391, 427
PpsI GAGTC 2 cut(s) 391, 427
PspN4I GGNNCC 2 cut(s) 188, 331
PspPI GGNCC 2 cut(s) 187, 212
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 2 cut(s) 305, 434
RsaNI GTAC 2 cut(s) 304, 433
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 5 cut(s) 6, 34, 176, 181, 277
Sau96I GGNCC 2 cut(s) 187, 212
SchI GAGTC 2 cut(s) 391, 428
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 24
SetI ASST 4 cut(s) 45, 225, 305, 344
SinI GGWCC 1 cut(s) 187
Sse9I AATT 1 cut(s) 443
SsiI CCGC 5 cut(s) 78, 88, 122, 139, 337
StyD4I CCNGG 1 cut(s) 192
TasI AATT 1 cut(s) 443
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 3 cut(s) 51, 61, 95
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TspDTI ATGAA 1 cut(s) 355
TspGWI ACGGA 3 cut(s) 107, 158, 393
Van91I CCANNNNNTGG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.