Rmu_ssc0000066.1_g000013

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000066.1
OG0000184
Physical Location & Seq
Reverse (-)
42704 .. 45115
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000066.1_g000013.1.cds

Sequence Viewer

Length: 456 bp
atgaatcggagacaagtggaatgggagaagaaaggaatcggtattgattccggaggaatgattcctaaacccatatccccccttctctccgtcaactaccgcctctccccggagcacggctacttttgccagtacgacgacggcctcgacgtcctcaaattcctcgaccaaaaccccgactccctccccgaccttgctgactgctcccgcttcttcctcgccggagacagcgccggcgcgaacattgcccaccacgtggcggtgcgagcttgccgcgagccgtttcgggtcgtgaaaccaatcgggttgatatcgatccagccgttcttcggcggagaggaacagaccgagtccgagatccgactagagggcgctccgctggtgtcggtgacccgaaccgattggctgtggaaggctttcttgccacaaaacccagaaacccagtggcttcgttga

Protein Analysis

151

Amino Acids

17.03

Weight (kDa)

5.35

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AccB7I CCANNNNNTGG 1 cut(s) 256
AccII CGCG 2 cut(s) 239, 276
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 6 cut(s) 100, 208, 260, 274, 333, 377
AclWI GGATC 2 cut(s) 310, 352
AcsI RAATTY 1 cut(s) 158
AcvI CACGTG 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 256
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 6 cut(s) 109, 116, 256, 259, 329, 367
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 2 cut(s) 4, 219
AlwI GGATC 2 cut(s) 310, 352
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 3 cut(s) 233, 239, 374
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 400
BbrPI CACGTG 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 117
BceAI ACGGC 4 cut(s) 133, 157, 265, 307
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 4, 219
BfaI CTAG 1 cut(s) 365
BfoI RGCGCY 2 cut(s) 234, 375
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 436
BmuI ACTGGG 1 cut(s) 436
BpuMI CCSGG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 314
BsaAI YACGTR 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 164, 194
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 116, 256, 259, 329, 367
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 130, 442
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 314
BseAI TCCGGA 1 cut(s) 50
BseCI ATCGAT 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 314
BseLI CCNNNNNNNGG 6 cut(s) 109, 116, 256, 259, 329, 367
BseMI GCAATG 1 cut(s) 243
BseNI ACTGG 2 cut(s) 130, 442
Bsh1236I CGCG 2 cut(s) 239, 276
BshFI GGCC 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 4 cut(s) 51, 110, 222, 234
BslI CCNNNNNNNGG 6 cut(s) 109, 116, 256, 259, 329, 367
BsmAI GTCTC 2 cut(s) 4, 219
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 117
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 2 cut(s) 315, 357
BspACI CCGC 6 cut(s) 100, 208, 260, 274, 333, 377
BspANI GGCC 1 cut(s) 144
BspDI ATCGAT 1 cut(s) 314
BspEI TCCGGA 1 cut(s) 50
BspFNI CGCG 2 cut(s) 239, 276
BspPI GGATC 2 cut(s) 310, 352
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 2 cut(s) 130, 442
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 315, 357
BssNI GRCGYC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 256
BstC8I GCNNGC 4 cut(s) 235, 267, 271, 278
BstEII GGTNACC 1 cut(s) 388
BstFNI CGCG 2 cut(s) 239, 276
BstH2I RGCGCY 2 cut(s) 234, 375
BstHHI GCGC 3 cut(s) 233, 239, 374
BstKTI GATC 2 cut(s) 318, 360
BstMAI GTCTC 2 cut(s) 4, 219
BstMBI GATC 2 cut(s) 315, 357
BstMWI GCNNNNNNNGC 3 cut(s) 126, 245, 266
BstPI GGTNACC 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 2 cut(s) 239, 276
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
Bsu15I ATCGAT 1 cut(s) 314
BsuRI GGCC 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 314
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 4 cut(s) 235, 267, 271, 278
CfoI GCGC 3 cut(s) 233, 239, 374
Cfr10I RCCGGY 1 cut(s) 233
ClaI ATCGAT 1 cut(s) 314
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 8 cut(s) 120, 144, 269, 280, 322, 406, 416, 448
CviKI_1 RGCY 8 cut(s) 120, 144, 269, 280, 322, 406, 416, 448
CviQI GTAC 1 cut(s) 133
DpnI GATC 2 cut(s) 317, 359
DpnII GATC 2 cut(s) 315, 357
DraIII CACNNNGTG 1 cut(s) 256
EciI GGCGGA 1 cut(s) 348
Eco32I GATATC 1 cut(s) 312
Eco72I CACGTG 1 cut(s) 256
Eco91I GGTNACC 1 cut(s) 388
EcoO65I GGTNACC 1 cut(s) 388
EcoRV GATATC 1 cut(s) 312
FaiI YATR 1 cut(s) 74
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 1 cut(s) 365
GlaI GCGC 3 cut(s) 232, 238, 373
GluI GCNGC 1 cut(s) 274
HaeII RGCGCY 2 cut(s) 234, 375
HaeIII GGCC 1 cut(s) 144
HapII CCGG 4 cut(s) 51, 110, 222, 234
HhaI GCGC 3 cut(s) 233, 239, 374
Hin1I GRCGYC 1 cut(s) 150
Hin6I GCGC 3 cut(s) 231, 237, 372
HinP1I GCGC 3 cut(s) 231, 237, 372
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 6 cut(s) 4, 36, 47, 61, 179, 350
HpaII CCGG 4 cut(s) 51, 110, 222, 234
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 9, 355, 362
Hpy188III TCNNGA 2 cut(s) 51, 292
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 3 cut(s) 140, 143, 152
HpyAV CCTTC 2 cut(s) 92, 406
HpyCH4IV ACGT 2 cut(s) 150, 255
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 245, 266
HpySE526I ACGT 2 cut(s) 150, 255
Hsp92I GRCGYC 1 cut(s) 150
HspAI GCGC 3 cut(s) 231, 237, 372
Kpn2I TCCGGA 1 cut(s) 50
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Kzo9I GATC 2 cut(s) 315, 357
LmnI GCTCC 3 cut(s) 112, 209, 379
LpnPI CCDG 8 cut(s) 64, 123, 143, 235, 247, 332, 365, 447
MaeI CTAG 1 cut(s) 365
MaeII ACGT 2 cut(s) 150, 255
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 317, 359
MboI GATC 2 cut(s) 315, 357
MboII GAAGA 3 cut(s) 40, 205, 319
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 158
MlyI GAGTC 2 cut(s) 173, 359
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 9 cut(s) 47, 113, 155, 164, 173, 194, 227, 331, 361
MreI CGCCGGCG 1 cut(s) 233
MroI TCCGGA 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 4 cut(s) 51, 110, 222, 234
MspR9I CCNGG 1 cut(s) 110
MvnI CGCG 2 cut(s) 239, 276
MwoI GCNNNNNNNGC 3 cut(s) 126, 245, 266
NaeI GCCGGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 110
NdeII GATC 2 cut(s) 315, 357
NgoMIV GCCGGC 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 388
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 147, 320
PdiI GCCGGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 4 cut(s) 4, 36, 47, 61
PflFI GACNNNGTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 256
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 2 cut(s) 173, 358
PmaCI CACGTG 1 cut(s) 256
PmlI CACGTG 1 cut(s) 256
PpsI GAGTC 2 cut(s) 173, 358
Ppu21I YACGTR 1 cut(s) 256
PspCI CACGTG 1 cut(s) 256
PspEI GGTNACC 1 cut(s) 388
PsuI RGATCY 1 cut(s) 357
PsyI GACNNNGTC 1 cut(s) 349
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 2 cut(s) 315, 357
SchI GAGTC 2 cut(s) 173, 359
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 117
SetI ASST 4 cut(s) 153, 195, 258, 271
SgrAI CRCCGGYG 1 cut(s) 233
Sse9I AATT 1 cut(s) 158
SsiI CCGC 6 cut(s) 100, 208, 260, 274, 333, 377
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 108
TaiI ACGT 2 cut(s) 153, 258
TaqI TCGA 3 cut(s) 147, 165, 314
TaqII GACCGA 1 cut(s) 362
TasI AATT 1 cut(s) 158
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 4 cut(s) 4, 36, 47, 61
TscAI CASTG 1 cut(s) 449
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 1 cut(s) 449
Tth111I GACNNNGTC 1 cut(s) 349
Van91I CCANNNNNTGG 1 cut(s) 256
XapI RAATTY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 1 cut(s) 365
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.