Rroxscaffold_7G00216660

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000184
Physical Location & Seq
Forward (+)
67393979 .. 67395313
1335 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00216660.1

Sequence Viewer

Length: 255 bp
ATGTGGAAGGCGTTTTTGCCAAAGGGGTCGGATCGGGACTATCCTGTGGCGAATGTGTTTCGGCCAGACGTGGTGGATATTTCGGGGGTGGATTTTCCGGCGACAATTGTGTATGTTAGGGGATTCGATTCGTGGCAAGATTGGCAGTTGAGGTATTGCAAGGGATTGAAGAAACGCGGGAAACAAGCGGAGGTAGTGGTGTTTCCAAATGTCATTCACATTTTCTGTACTTATCCGAGTTGGAAGACTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

84

Amino Acids

9.8

Weight (kDa)

9.26

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 1 - 76 2.3e-11 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 177
AciI CCGC 2 cut(s) 177, 188
AclWI GGATC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 62
AfaI GTAC 1 cut(s) 229
AgsI TTSAA 1 cut(s) 169
AjiI CACGTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 39
AoxI GGCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 251
BmgBI CACGTC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 2 cut(s) 177, 188
BspANI GGCC 1 cut(s) 64
BspFNI CGCG 1 cut(s) 177
BspPI GGATC 1 cut(s) 39
BssMI GATC 1 cut(s) 31
BstFNI CGCG 1 cut(s) 177
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstUI CGCG 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 64
BtrI CACGTC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 228
CviJI RGCY 1 cut(s) 64
CviKI_1 RGCY 1 cut(s) 64
CviQI GTAC 1 cut(s) 228
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 62
FaiI YATR 1 cut(s) 114
FaqI GGGAC 1 cut(s) 50
FauI CCCGC 1 cut(s) 170
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 98
HinfI GANTC 3 cut(s) 123, 128, 247
HpaII CCGG 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 31, 237
Hpy188III TCNNGA 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 69
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 3 cut(s) 57, 78, 111
MaeII ACGT 1 cut(s) 69
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 181
MfeI CAATTG 1 cut(s) 105
MluCI AATT 1 cut(s) 105
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 2 cut(s) 9, 221
MnlI CCTC 2 cut(s) 144, 184
MspI CCGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 105
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 123, 128
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 241
SetI ASST 3 cut(s) 72, 155, 195
Sse9I AATT 1 cut(s) 105
SsiI CCGC 2 cut(s) 177, 188
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 126
TasI AATT 1 cut(s) 105
TatI WGTACW 1 cut(s) 227
TfiI GAWTC 2 cut(s) 123, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.