Rh6AG005500

Carboxylesterase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
736532 .. 737463
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG005500.1

Sequence Viewer

Length: 336 bp
ATGAAGAGAGCGGAGACAAATCCGCCATCACCTTCGCTCCCCATCATCGTCTTCTTCCACGGCGGCGGGTTCGCCTTCATGTCTGCCGCTTCAAAACCGTACGACGACTTCTGTCAACGCCTCGCTCGCGAGATCCCCGCCGTCGTCGTCTCCGTCAACTACCGCCTCGCGCCGGAGCATCGGTATCCGCCGCCGCCGTCTCCGTTAACTACCGCCGCCAGTACGACGACGGATTCGACGTCCTCAAGTTCATCGACAACAGTCAAAGCAGCTTGTTCGAGGGCGCGAATCTCGGGCAGTGCTTTCTGGCCGGGGACAGAGCTGGCGGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

11.73

Weight (kDa)

9.18

Isoelectric Point (pI)

56.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 9 - 57 2.8e-07 Carboxylesterase family
Abhydrolase_3 PF07859 16 - 74 5.8e-18 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 11
AccII CGCG 3 cut(s) 129, 170, 286
AclWI GGATC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 2 cut(s) 101, 223
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 93
AluBI AGCT 2 cut(s) 272, 322
AluI AGCT 2 cut(s) 272, 322
Alw26I GTCTC 3 cut(s) 8, 154, 204
AlwI GGATC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 292
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
AspLEI GCGC 2 cut(s) 172, 286
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 21
AvaI CYCGRG 1 cut(s) 292
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 281
BccI CCATC 2 cut(s) 34, 50
BceAI ACGGC 3 cut(s) 76, 125, 181
BcgI CGANNNNNNTGC 2 cut(s) 258, 292
BciVI GTATCC 1 cut(s) 195
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 8, 154, 204
BfuI GTATCC 1 cut(s) 195
BisI GCNGC 6 cut(s) 64, 87, 191, 194, 216, 270
BlsI GCNGC 6 cut(s) 65, 88, 192, 195, 217, 271
Bme1390I CCNGG 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 187
BoxI GACNNNNGTC 2 cut(s) 111, 260
BpiI GAAGAC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 58, 311
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 58, 311
BseLI CCNNNNNNNGG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 281
Bsh1236I CGCG 3 cut(s) 129, 170, 286
BshFI GGCC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 2 cut(s) 173, 311
BsiWI CGTACG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 3 cut(s) 8, 154, 204
BsmBI CGTCTC 2 cut(s) 154, 204
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 292
Bsp143I GATC 1 cut(s) 132
Bsp68I TCGCGA 1 cut(s) 129
BspANI GGCC 1 cut(s) 310
BspFNI CGCG 3 cut(s) 129, 170, 286
BspPI GGATC 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 58, 311
BssMI GATC 1 cut(s) 132
BssNI GRCGYC 1 cut(s) 239
Bst4CI ACNGT 2 cut(s) 99, 262
BstACI GRCGYC 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 127, 324
BstDSI CCRYGG 1 cut(s) 58
BstFNI CGCG 3 cut(s) 129, 170, 286
BstHHI GCGC 2 cut(s) 172, 286
BstKTI GATC 1 cut(s) 135
BstMAI GTCTC 3 cut(s) 8, 154, 204
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstPAI GACNNNNGTC 2 cut(s) 111, 260
BstSCI CCNGG 1 cut(s) 310
BstUI CGCG 3 cut(s) 129, 170, 286
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 132
BstYI RGATCY 1 cut(s) 132
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
BtuMI TCGCGA 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 127, 324
CfoI GCGC 2 cut(s) 172, 286
Csp6I GTAC 2 cut(s) 100, 222
CviAII CATG 1 cut(s) 79
CviJI RGCY 3 cut(s) 272, 310, 322
CviKI_1 RGCY 3 cut(s) 272, 310, 322
CviQI GTAC 2 cut(s) 100, 222
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 308
EciI GGCGGA 2 cut(s) 12, 177
Eco88I CYCGRG 1 cut(s) 292
Esp3I CGTCTC 2 cut(s) 154, 204
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 334
FaqI GGGAC 1 cut(s) 328
FatI CATG 1 cut(s) 78
FauI CCCGC 3 cut(s) 59, 145, 319
Fnu4HI GCNGC 6 cut(s) 64, 87, 191, 194, 216, 270
Fsp4HI GCNGC 6 cut(s) 64, 87, 191, 194, 216, 270
GlaI GCGC 2 cut(s) 171, 285
GluI GCNGC 6 cut(s) 64, 87, 191, 194, 216, 270
HaeIII GGCC 1 cut(s) 310
HapII CCGG 2 cut(s) 173, 311
HhaI GCGC 2 cut(s) 172, 286
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 2 cut(s) 170, 284
HinP1I GCGC 2 cut(s) 170, 284
HincII GTYRAC 3 cut(s) 116, 157, 207
HindII GTYRAC 3 cut(s) 116, 157, 207
HinfI GANTC 2 cut(s) 233, 288
HpaI GTTAAC 1 cut(s) 207
HpaII CCGG 2 cut(s) 173, 311
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 3 cut(s) 116, 157, 207
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 3 cut(s) 116, 157, 207
Hpy99I CGWCG 6 cut(s) 107, 146, 149, 229, 232, 241
HpyAV CCTTC 2 cut(s) 42, 85
HpyCH4III ACNGT 2 cut(s) 99, 262
HpyCH4IV ACGT 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 2 cut(s) 170, 284
KspAI GTTAAC 1 cut(s) 207
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 42, 175
LpnPI CCDG 5 cut(s) 186, 232, 292, 308, 324
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 1 cut(s) 187
MaeII ACGT 1 cut(s) 239
MalI GATC 1 cut(s) 134
MbiI CCGCTC 1 cut(s) 11
MboI GATC 1 cut(s) 132
MboII GAAGA 3 cut(s) 16, 43, 46
MflI RGATCY 1 cut(s) 132
MnlI CCTC 4 cut(s) 131, 176, 253, 273
MseI TTAA 1 cut(s) 206
MspI CCGG 2 cut(s) 173, 311
MspR9I CCNGG 1 cut(s) 312
MvnI CGCG 3 cut(s) 129, 170, 286
MwoI GCNNNNNNNGC 1 cut(s) 126
NciI CCSGG 1 cut(s) 312
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 82
NruI TCGCGA 1 cut(s) 129
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 233, 236
PfeI GAWTC 2 cut(s) 233, 288
Pfl23II CGTACG 1 cut(s) 99
PkrI GCNGC 6 cut(s) 65, 88, 192, 195, 217, 271
PshAI GACNNNNGTC 2 cut(s) 111, 260
PspLI CGTACG 1 cut(s) 99
PsuI RGATCY 1 cut(s) 132
RruI TCGCGA 1 cut(s) 129
RsaI GTAC 2 cut(s) 101, 223
RsaNI GTAC 2 cut(s) 100, 222
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 6 cut(s) 64, 87, 191, 194, 216, 270
Sau3AI GATC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 312
SetI ASST 4 cut(s) 34, 242, 274, 324
SfaNI GCATC 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 99, 262
TaiI ACGT 1 cut(s) 242
TaqI TCGA 3 cut(s) 236, 254, 278
TauI GCSGC 5 cut(s) 66, 89, 193, 196, 218
TfiI GAWTC 2 cut(s) 233, 288
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 3 cut(s) 17, 67, 240
TspGWI ACGGA 3 cut(s) 142, 192, 245
TspRI CASTG 1 cut(s) 304
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.