Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006110.1

Orthogroup ID

OG0000184

Physical Location & Seq

Genomic Coordinates Reverse (-)

3594 .. 4187

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006110.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgagcttcctcgacttacgctcctccgccactccctcagccccctacaaaggcgtcaccacctccgacgtcaccgtcgaccaaacctgcaagctctggttccgcttcttcgtcccttctacgacatcgtcttcccccgcctctttacccgtcgtctttttcttccacggcagcggcttcagctttctcagccccgactcctacgcctacgacgccgtctgccgcaaattggcctgcgaaatctccgtcgtcgtagtctccgtcaactaccacctctcccctgagaacggctacccctgccagtacgacgacggcctcgacgtccttaaattcctcgaccaaaaccccgactccctcctcgacctcgctgactgctcccgctgcttcctcgccggagacagcgccggcgtgaacattgcccaccacgtggcggtgcgagcctgccgcgagccgtttcgggttgtgaaaccaaccgggttgatatcgatccagaaaacccagaaacccggtggctttcttgagactgtggaaggctttcttgccacaaaacccagaaacccggtggcttcattgatactgaggagatttgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

197

Amino Acids

21.57

Weight (kDa)

6.41

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23530
fragaria_vesca	FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica	MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica	Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis	pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis	RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata	RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora	Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii	Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa	Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha	Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana	Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	2 cut(s)	72, 324
Acc36I	ACCTGC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	447
AciI	CCGC	8 cut(s)	27, 103, 138, 174, 223, 379, 431, 445
AclWI	GGATC	1 cut(s)	481
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	163
AcvI	CACGTG	1 cut(s)	427
AcyI	GRCGYC	4 cut(s)	54, 69, 213, 321
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	5 cut(s)	50, 229, 287, 427, 430
AgsI	TTSAA	1 cut(s)	590
AluBI	AGCT	3 cut(s)	6, 94, 183
AluI	AGCT	3 cut(s)	6, 94, 183
Alw26I	GTCTC	3 cut(s)	262, 390, 515
AlwI	GGATC	1 cut(s)	481
AoxI	GGCC	2 cut(s)	231, 313
ApeKI	GCWGC	2 cut(s)	171, 381
ApoI	RAATTY	1 cut(s)	329
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	1 cut(s)	404
AsuC2I	CCSGG	3 cut(s)	475, 507, 560
AsuHPI	GGTGA	2 cut(s)	49, 64
BbrPI	CACGTG	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	123
BbvCI	CCTCAGC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	183, 368
BceAI	ACGGC	5 cut(s)	184, 200, 304, 328, 436
BcnI	CCSGG	3 cut(s)	475, 507, 560
BcoDI	GTCTC	3 cut(s)	262, 390, 515
BfoI	RGCGCY	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	5 cut(s)	172, 175, 223, 382, 445
BlsI	GCNGC	5 cut(s)	173, 176, 224, 383, 446
Bme1390I	CCNGG	3 cut(s)	475, 507, 560
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	3 cut(s)	475, 507, 560
BpiI	GAAGAC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	3 cut(s)	475, 507, 560
Bsa29I	ATCGAT	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	485
BsaHI	GRCGYC	4 cut(s)	54, 69, 213, 321
BsaJI	CCNNGG	1 cut(s)	166
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 260, 290, 335, 365
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 229, 287, 427, 430
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	414
Bse8I	GATNNNNATC	1 cut(s)	485
BseCI	ATCGAT	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	5 cut(s)	50, 229, 287, 427, 430
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	4 cut(s)	51, 202, 273, 569
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	2 cut(s)	13, 347
BseXI	GCAGC	2 cut(s)	183, 368
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	233, 315
BshVI	ATCGAT	1 cut(s)	485
BsiSI	CCGG	5 cut(s)	393, 405, 474, 507, 560
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	5 cut(s)	50, 229, 287, 427, 430
BsmAI	GTCTC	3 cut(s)	262, 390, 515
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	233, 315
Bsp143I	GATC	1 cut(s)	486
BspACI	CCGC	8 cut(s)	27, 103, 138, 174, 223, 379, 431, 445
BspANI	GGCC	2 cut(s)	233, 315
BspCNI	CTCAG	4 cut(s)	50, 201, 274, 570
BspDI	ATCGAT	1 cut(s)	485
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	486
BssNI	GRCGYC	4 cut(s)	54, 69, 213, 321
Bst4CI	ACNGT	2 cut(s)	76, 526
BstACI	GRCGYC	4 cut(s)	54, 69, 213, 321
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	6 cut(s)	92, 235, 406, 438, 442, 449
BstDEI	CTNAG	4 cut(s)	37, 188, 282, 578
BstDSI	CCRYGG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	447
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	3 cut(s)	262, 390, 515
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	6 cut(s)	180, 189, 212, 297, 381, 437
BstSCI	CCNGG	3 cut(s)	473, 505, 558
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	183, 368
BstV2I	GAAGAC	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	233, 315
BsuTUI	ATCGAT	1 cut(s)	485
BtgI	CCRYGG	1 cut(s)	166
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	6 cut(s)	92, 235, 406, 438, 442, 449
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	404
ClaI	ATCGAT	1 cut(s)	485
CseI	GACGC	2 cut(s)	43, 221
Csp6I	GTAC	1 cut(s)	304
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	4 cut(s)	37, 188, 282, 578
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
DraIII	CACNNNGTG	1 cut(s)	427
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	163
Eco72I	CACGTG	1 cut(s)	427
EcoRV	GATATC	1 cut(s)	483
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FaqI	GGGAC	1 cut(s)	98
FauI	CCCGC	2 cut(s)	145, 386
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	5 cut(s)	172, 175, 223, 382, 445
Fsp4HI	GCNGC	5 cut(s)	172, 175, 223, 382, 445
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	5 cut(s)	172, 175, 223, 382, 445
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	233, 315
HapII	CCGG	5 cut(s)	393, 405, 474, 507, 560
HgaI	GACGC	2 cut(s)	43, 221
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	4 cut(s)	54, 69, 213, 321
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	2 cut(s)	79, 265
HindII	GTYRAC	2 cut(s)	79, 265
HinfI	GANTC	2 cut(s)	197, 350
HpaII	CCGG	5 cut(s)	393, 405, 474, 507, 560
HphI	GGTGA	2 cut(s)	49, 64
Hpy166II	GTNNAC	3 cut(s)	79, 265, 412
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	490, 518
Hpy8I	GTNNAC	3 cut(s)	79, 265, 412
Hpy99I	CGWCG	9 cut(s)	71, 80, 155, 215, 251, 254, 311, 314, 323
HpyAV	CCTTC	2 cut(s)	126, 524
HpyCH4III	ACNGT	2 cut(s)	76, 526
HpyCH4IV	ACGT	3 cut(s)	69, 321, 426
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	6 cut(s)	180, 189, 212, 297, 381, 437
HpyF3I	CTNAG	4 cut(s)	37, 188, 282, 578
HpySE526I	ACGT	3 cut(s)	69, 321, 426
Hsp92I	GRCGYC	4 cut(s)	54, 69, 213, 321
HspAI	GCGC	1 cut(s)	402
KroI	GCCGGC	1 cut(s)	404
KroNI	GCCGGC	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	26, 380
Lsp1109I	GCAGC	2 cut(s)	183, 368
MaeII	ACGT	3 cut(s)	69, 321, 426
MaeIII	GTNAC	2 cut(s)	55, 70
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	3 cut(s)	100, 123, 154
MluCI	AATT	2 cut(s)	227, 329
MlyI	GAGTC	2 cut(s)	191, 344
MmeI	TCCRAC	1 cut(s)	90
MreI	CGCCGGCG	1 cut(s)	404
MroNI	GCCGGC	1 cut(s)	404
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	1 cut(s)	327
MspA1I	CMGCKG	2 cut(s)	174, 381
MspI	CCGG	5 cut(s)	393, 405, 474, 507, 560
MspR9I	CCNGG	3 cut(s)	475, 507, 560
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	6 cut(s)	180, 189, 212, 297, 381, 437
NaeI	GCCGGC	1 cut(s)	406
NciI	CCSGG	3 cut(s)	475, 507, 560
NdeII	GATC	1 cut(s)	486
NgoMIV	GCCGGC	1 cut(s)	404
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	2 cut(s)	55, 70
PcsI	WCGNNNNNNNCGW	4 cut(s)	75, 258, 315, 318
PdiI	GCCGGC	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	534
PflFI	GACNNNGTC	2 cut(s)	127, 215
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	5 cut(s)	173, 176, 224, 383, 446
PleI	GAGTC	2 cut(s)	191, 344
PmaCI	CACGTG	1 cut(s)	427
PmlI	CACGTG	1 cut(s)	427
PpsI	GAGTC	2 cut(s)	191, 344
Ppu21I	YACGTR	1 cut(s)	427
PspCI	CACGTG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	101
PsyI	GACNNNGTC	2 cut(s)	127, 215
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	5 cut(s)	172, 175, 223, 382, 445
Sau3AI	GATC	1 cut(s)	486
SchI	GAGTC	2 cut(s)	191, 344
ScrFI	CCNGG	3 cut(s)	475, 507, 560
SgrAI	CRCCGGYG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	2 cut(s)	227, 329
SsiI	CCGC	8 cut(s)	27, 103, 138, 174, 223, 379, 431, 445
StyD4I	CCNGG	3 cut(s)	473, 505, 558
TaaI	ACNGT	2 cut(s)	76, 526
TaiI	ACGT	3 cut(s)	72, 324, 429
TaqI	TCGA	6 cut(s)	12, 78, 318, 336, 360, 485
TasI	AATT	2 cut(s)	227, 329
TauI	GCSGC	3 cut(s)	177, 225, 447
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseFI	GTSAC	2 cut(s)	55, 70
TseI	GCWGC	2 cut(s)	171, 381
Tsp45I	GTSAC	2 cut(s)	55, 70
TspDTI	ATGAA	1 cut(s)	558
TspGWI	ACGGA	2 cut(s)	235, 250
Tth111I	GACNNNGTC	2 cut(s)	127, 215
Van91I	CCANNNNNTGG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	2 cut(s)	506, 559
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	534
ZraI	GACGTC	2 cut(s)	70, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.