Rh7CG026000

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000184
Physical Location & Seq
Forward (+)
1861967 .. 1863651
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG026000.1

Sequence Viewer

Length: 666 bp
ATGAGCTTCCTCGATTTATGCTCCTCTGCCACTCCCTCAGCTCCCTACAAAGGCGTCACCACCTCCAACGTCACCGTCGACCAAACCCGCAACCTCTGGTTCCGCTTCTTCGTCCCCTCTATGACGTCGTCTTCCCCCGCCTCTTTACCCGTCGTCGTTTTCTTCCACGGCGGCGGCTTCAGCTTTCTCAGCCCCGACTCCTACGCCTACGACGCCGTCTGCCACAAATTCGCCCGCGAAATCCCCGCCGTCGTAGTCTCCGTCAACTACCGCCTCTCCCCGGAGCACGGCTACCCCTGCCAGTACGACGACGGCCTCGACGTCCTCAAATTCCTCAACCAAAACCCCGACTCCCTCCCCGACGTCGTTAACTGCTCCCGCTGCTTCCTCGCCGGAGACAGTGCCGGCGCGAACACTGCCCACCACGTGGCGATGCGAGCCTGCTGCGAGCTGTTTCGGGTCGTGAAACCAATCGGGTTGATATCGATCCAACCGTTCTTCGGCGGCGAGGAACGGACCAAGTCCGAGATCCGACTCGAGGGAGCGCCGCTGGTGTCGGTGACCCGAACCGATTGGCTGTGGAAGGCTTTCTTGCCACAAAACCCAGAATCCTGCCACAAAACCCAGAAACCCGGAAAACAAGTTTATGATGGCATCAAAGGTTAA

Protein Analysis

221

Amino Acids

24.32

Weight (kDa)

6.98

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Say1_Mug180 PF10340 31 - 198 4e-07 Steryl acetyl hydrolase
COesterase PF00135 36 - 94 2e-08 Carboxylesterase family
BD-FAE PF20434 45 - 146 4e-11 BD-FAE
Abhydrolase_3 PF07859 52 - 203 4.1e-37 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 128, 324, 366
AccB7I CCANNNNNTGG 1 cut(s) 427
AccI GTMKAC 1 cut(s) 78
AccII CGCG 2 cut(s) 237, 410
AclWI GGATC 2 cut(s) 481, 523
AcsI RAATTY 2 cut(s) 227, 329
AcuI CTGAAG 1 cut(s) 163
AcvI CACGTG 1 cut(s) 427
AcyI GRCGYC 5 cut(s) 54, 125, 213, 321, 363
AdeI CACNNNGTG 1 cut(s) 427
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 6 cut(s) 50, 280, 287, 427, 500, 538
AluBI AGCT 4 cut(s) 6, 41, 183, 451
AluI AGCT 4 cut(s) 6, 41, 183, 451
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 262, 390
AlwI GGATC 2 cut(s) 481, 523
Ama87I CYCGRG 1 cut(s) 536
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 2 cut(s) 381, 444
ApoI RAATTY 2 cut(s) 227, 329
Asp700I GAANNNNTTC 1 cut(s) 587
AspLEI GCGC 2 cut(s) 410, 547
AspS9I GGNCC 1 cut(s) 516
AsuC2I CCSGG 2 cut(s) 281, 633
AsuHPI GGTGA 3 cut(s) 49, 64, 571
AvaI CYCGRG 1 cut(s) 536
AvaII GGWCC 1 cut(s) 516
BbrPI CACGTG 1 cut(s) 427
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 368, 431
BccI CCATC 1 cut(s) 644
BceAI ACGGC 5 cut(s) 184, 200, 233, 304, 328
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BcnI CCSGG 2 cut(s) 281, 633
BcoDI GTCTC 2 cut(s) 262, 390
BfoI RGCGCY 1 cut(s) 548
BisI GCNGC 6 cut(s) 172, 175, 382, 445, 505, 548
BlsI GCNGC 6 cut(s) 173, 176, 383, 446, 506, 549
Bme1390I CCNGG 2 cut(s) 281, 633
Bme18I GGWCC 1 cut(s) 516
BmeT110I CYCGRG 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 281, 633
BmsI GCATC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 37
BpuMI CCSGG 2 cut(s) 281, 633
Bsa29I ATCGAT 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 485
BsaHI GRCGYC 5 cut(s) 54, 125, 213, 321, 363
BsaJI CCNNGG 2 cut(s) 166, 279
BsaXI ACNNNNNCTCC 4 cut(s) 260, 290, 335, 365
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 280, 287, 427, 500, 538
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 485
BseCI ATCGAT 1 cut(s) 485
BseDI CCNNGG 2 cut(s) 166, 279
BseJI GATNNNNATC 1 cut(s) 485
BseLI CCNNNNNNNGG 6 cut(s) 50, 280, 287, 427, 500, 538
BseMII CTCAG 2 cut(s) 51, 202
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 2 cut(s) 368, 431
Bsh1236I CGCG 2 cut(s) 237, 410
BshFI GGCC 1 cut(s) 315
BshVI ATCGAT 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 536
BsiSI CCGG 4 cut(s) 281, 393, 405, 633
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 6 cut(s) 50, 280, 287, 427, 500, 538
BsmAI GTCTC 2 cut(s) 262, 390
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 486, 528
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 50, 201
BspDI ATCGAT 1 cut(s) 485
BspFNI CGCG 2 cut(s) 237, 410
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 2 cut(s) 481, 523
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 2 cut(s) 166, 279
BssMI GATC 2 cut(s) 486, 528
BssNI GRCGYC 5 cut(s) 54, 125, 213, 321, 363
Bst4CI ACNGT 3 cut(s) 76, 401, 495
BstACI GRCGYC 5 cut(s) 54, 125, 213, 321, 363
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 5 cut(s) 235, 406, 438, 442, 449
BstDEI CTNAG 2 cut(s) 37, 188
BstDSI CCRYGG 1 cut(s) 166
BstEII GGTNACC 1 cut(s) 559
BstFNI CGCG 2 cut(s) 237, 410
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 2 cut(s) 410, 547
BstKTI GATC 2 cut(s) 489, 531
BstMAI GTCTC 2 cut(s) 262, 390
BstMBI GATC 2 cut(s) 486, 528
BstMWI GCNNNNNNNGC 7 cut(s) 180, 189, 212, 297, 381, 416, 437
BstPI GGTNACC 1 cut(s) 559
BstSCI CCNGG 2 cut(s) 279, 631
BstUI CGCG 2 cut(s) 237, 410
BstV1I GCAGC 2 cut(s) 368, 431
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 528
BstYI RGATCY 1 cut(s) 528
Bsu15I ATCGAT 1 cut(s) 485
BsuRI GGCC 1 cut(s) 315
BsuTUI ATCGAT 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 446
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 2 cut(s) 406, 414
Cac8I GCNNGC 5 cut(s) 235, 406, 438, 442, 449
CfoI GCGC 2 cut(s) 410, 547
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 516
ClaI ATCGAT 1 cut(s) 485
CseI GACGC 2 cut(s) 43, 221
Csp6I GTAC 1 cut(s) 304
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 2 cut(s) 37, 188
DpnI GATC 2 cut(s) 488, 530
DpnII GATC 2 cut(s) 486, 528
DraIII CACNNNGTG 1 cut(s) 427
Eco32I GATATC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 163
Eco72I CACGTG 1 cut(s) 427
Eco88I CYCGRG 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 559
EcoO65I GGTNACC 1 cut(s) 559
EcoRV GATATC 1 cut(s) 483
FaiI YATR 3 cut(s) 19, 122, 648
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 1 cut(s) 98
FauI CCCGC 5 cut(s) 95, 145, 242, 253, 386
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 6 cut(s) 172, 175, 382, 445, 505, 548
Fsp4HI GCNGC 6 cut(s) 172, 175, 382, 445, 505, 548
GlaI GCGC 2 cut(s) 409, 546
GluI GCNGC 6 cut(s) 172, 175, 382, 445, 505, 548
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 1 cut(s) 315
HapII CCGG 4 cut(s) 281, 393, 405, 633
HgaI GACGC 2 cut(s) 43, 221
HhaI GCGC 2 cut(s) 410, 547
Hin1I GRCGYC 5 cut(s) 54, 125, 213, 321, 363
Hin6I GCGC 2 cut(s) 408, 545
HinP1I GCGC 2 cut(s) 408, 545
HincII GTYRAC 3 cut(s) 79, 265, 370
HindII GTYRAC 3 cut(s) 79, 265, 370
HinfI GANTC 4 cut(s) 197, 350, 534, 608
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 4 cut(s) 281, 393, 405, 633
HphI GGTGA 3 cut(s) 49, 64, 571
Hpy166II GTNNAC 3 cut(s) 79, 265, 370
Hpy188I TCNGA 2 cut(s) 526, 533
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 3 cut(s) 79, 265, 370
HpyAV CCTTC 1 cut(s) 577
HpyCH4III ACNGT 3 cut(s) 76, 401, 495
HpyCH4IV ACGT 5 cut(s) 69, 125, 321, 363, 426
HpyF10VI GCNNNNNNNGC 7 cut(s) 180, 189, 212, 297, 381, 416, 437
HpyF3I CTNAG 2 cut(s) 37, 188
HpySE526I ACGT 5 cut(s) 69, 125, 321, 363, 426
Hsp92I GRCGYC 5 cut(s) 54, 125, 213, 321, 363
HspAI GCGC 2 cut(s) 408, 545
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 2 cut(s) 486, 528
LmnI GCTCC 5 cut(s) 26, 46, 283, 380, 542
Lsp1109I GCAGC 2 cut(s) 368, 431
LweI GCATC 1 cut(s) 423
MaeII ACGT 5 cut(s) 69, 125, 321, 363, 426
MaeIII GTNAC 3 cut(s) 55, 70, 559
MalI GATC 2 cut(s) 488, 530
MboI GATC 2 cut(s) 486, 528
MboII GAAGA 4 cut(s) 100, 123, 154, 490
MflI RGATCY 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 2 cut(s) 227, 329
MlyI GAGTC 3 cut(s) 191, 344, 528
MmeI TCCRAC 3 cut(s) 90, 514, 556
MroNI GCCGGC 1 cut(s) 404
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 2 cut(s) 369, 664
MspA1I CMGCKG 2 cut(s) 381, 550
MspI CCGG 4 cut(s) 281, 393, 405, 633
MspR9I CCNGG 2 cut(s) 281, 633
MvnI CGCG 2 cut(s) 237, 410
MwoI GCNNNNNNNGC 7 cut(s) 180, 189, 212, 297, 381, 416, 437
NaeI GCCGGC 1 cut(s) 406
NciI CCSGG 2 cut(s) 281, 633
NdeII GATC 2 cut(s) 486, 528
NgoMIV GCCGGC 1 cut(s) 404
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 3 cut(s) 55, 70, 559
PaeR7I CTCGAG 1 cut(s) 536
PcsI WCGNNNNNNNCGW 5 cut(s) 75, 258, 315, 318, 491
PdiI GCCGGC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 1 cut(s) 608
PflFI GACNNNGTC 3 cut(s) 127, 215, 520
PflMI CCANNNNNTGG 1 cut(s) 427
PkrI GCNGC 6 cut(s) 173, 176, 383, 446, 506, 549
PleI GAGTC 3 cut(s) 191, 344, 528
PmaCI CACGTG 1 cut(s) 427
PmlI CACGTG 1 cut(s) 427
PpsI GAGTC 3 cut(s) 191, 344, 528
Ppu21I YACGTR 1 cut(s) 427
PspCI CACGTG 1 cut(s) 427
PspEI GGTNACC 1 cut(s) 559
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 516
PspXI VCTCGAGB 1 cut(s) 536
PsuI RGATCY 1 cut(s) 528
PsyI GACNNNGTC 3 cut(s) 127, 215, 520
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 2 cut(s) 369, 664
SatI GCNGC 6 cut(s) 172, 175, 382, 445, 505, 548
Sau3AI GATC 2 cut(s) 486, 528
Sau96I GGNCC 1 cut(s) 516
SchI GAGTC 3 cut(s) 191, 344, 528
ScrFI CCNGG 2 cut(s) 281, 633
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 1 cut(s) 423
Sfr274I CTCGAG 1 cut(s) 536
SinI GGWCC 1 cut(s) 516
SlaI CTCGAG 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 2 cut(s) 227, 329
StyD4I CCNGG 2 cut(s) 279, 631
TaaI ACNGT 3 cut(s) 76, 401, 495
TaiI ACGT 5 cut(s) 72, 128, 324, 366, 429
TaqI TCGA 5 cut(s) 12, 78, 318, 485, 537
TasI AATT 2 cut(s) 227, 329
TauI GCSGC 4 cut(s) 174, 177, 507, 550
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 2 cut(s) 369, 664
Tru9I TTAA 2 cut(s) 369, 664
TscAI CASTG 2 cut(s) 406, 421
TseFI GTSAC 3 cut(s) 55, 70, 559
TseI GCWGC 2 cut(s) 381, 444
Tsp45I GTSAC 3 cut(s) 55, 70, 559
TspGWI ACGGA 2 cut(s) 250, 529
TspRI CASTG 2 cut(s) 406, 421
Tth111I GACNNNGTC 3 cut(s) 127, 215, 520
Van91I CCANNNNNTGG 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 516
XapI RAATTY 2 cut(s) 227, 329
XhoI CTCGAG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 587
ZraI GACGTC 3 cut(s) 126, 322, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.