Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000184

Physical Location & Seq

Genomic Coordinates Forward (+)

20487292 .. 20488914

Gene Structure 1623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007738

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAAACCAAGGCCGCCGCCGTCAAGAGCAACGCCACCGGGCTCAACTTGGCCGTTATATCACCCACCTTGGAACCTCCAGCGAGAAGCGGCGGCAGGTGAGATCGTAAAAGATGCGCCCGTGGTAACGGAAGATGTTCGTGTCGCTGCCGAGGCTGAATCTTCCCCCGCCTCTTTACCCGTCGTCATTTTCTTCCACGGCGGCGGCTTCAGCTTTCTCAGCCCCGACTCCTACGCCTACGACGCTGTCTACCGTAAATTCGCCCGCGAAATCCCTGCCGTCGTAGTCTCCGTCAACTACCGCCTCTCCTCGGAGCACGACGACGGCCTCGACGACCTCAAATTCCTCGACCAAAACCCCGACTCCCTCCCCGACCTCACTGACTGCTCCCACTGCTTCCTCGCCGGAGACAGCGCCAGCGTGAACAATGCCCACCACGTGGCGGTGCGAGCCTGCCGCGAGCCGTTTCGGGTCGTGAAACCAATCGGGTTGATATCAATCCAACCGTTCTTCGGCGGCGAGGAACGGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

178

Amino Acids

19.36

Weight (kDa)

5.28

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	51 - 102	9.8e-07	Carboxylesterase family
Abhydrolase_3	PF07859	62 - 170	7.7e-18	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23530
fragaria_vesca	FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica	MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica	Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis	pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis	RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata	RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora	Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii	Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa	Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha	Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana	Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	2 cut(s)	267, 459
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	2 cut(s)	257, 341
AcuI	CTGAAG	1 cut(s)	193
AcvI	CACGTG	1 cut(s)	439
AdeI	CACNNNGTG	1 cut(s)	439
AfiI	CCNNNNNNNGG	4 cut(s)	310, 439, 442, 512
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	2 cut(s)	292, 402
AoxI	GGCC	3 cut(s)	11, 50, 325
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	257, 341
Asp700I	GAANNNNTTC	1 cut(s)	135
AspLEI	GCGC	2 cut(s)	118, 416
AspS9I	GGNCC	1 cut(s)	528
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	53, 110
AvaII	GGWCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	44
BbrPI	CACGTG	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	133
BceAI	ACGGC	6 cut(s)	4, 37, 214, 263, 340, 448
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	292, 402
BfaI	CTAG	1 cut(s)	532
BfoI	RGCGCY	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	9 cut(s)	14, 17, 90, 93, 147, 202, 205, 457, 517
BlsI	GCNGC	9 cut(s)	15, 18, 91, 94, 148, 203, 206, 458, 518
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	528
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	497
BsaJI	CCNNGG	6 cut(s)	8, 68, 120, 150, 196, 309
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 347, 377
Bsc4I	CCNNNNNNNGG	4 cut(s)	310, 439, 442, 512
Bse8I	GATNNNNATC	1 cut(s)	497
BseDI	CCNNGG	6 cut(s)	8, 68, 120, 150, 196, 309
BseJI	GATNNNNATC	1 cut(s)	497
BseLI	CCNNNNNNNGG	4 cut(s)	310, 439, 442, 512
BseMII	CTCAG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	267, 459
BshFI	GGCC	3 cut(s)	13, 52, 327
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	38, 405
BslI	CCNNNNNNNGG	4 cut(s)	310, 439, 442, 512
BsmAI	GTCTC	2 cut(s)	292, 402
BsnI	GGCC	3 cut(s)	13, 52, 327
Bsp1286I	GDGCHC	2 cut(s)	44, 318
Bsp143I	GATC	1 cut(s)	102
BspANI	GGCC	3 cut(s)	13, 52, 327
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	267, 459
BspLI	GGNNCC	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	86
BssECI	CCNNGG	6 cut(s)	8, 68, 120, 150, 196, 309
BssMI	GATC	1 cut(s)	102
BssT1I	CCWWGG	2 cut(s)	8, 68
Bst4CI	ACNGT	2 cut(s)	254, 507
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	5 cut(s)	265, 418, 450, 454, 461
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	2 cut(s)	120, 196
BstFNI	CGCG	2 cut(s)	267, 459
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	2 cut(s)	118, 416
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	2 cut(s)	292, 402
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 210, 219, 242, 393, 449
BstSCI	CCNGG	1 cut(s)	37
BstUI	CGCG	2 cut(s)	267, 459
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	13, 52, 327
BtgI	CCRYGG	2 cut(s)	120, 196
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	378, 391
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	5 cut(s)	265, 418, 450, 454, 461
CfoI	GCGC	2 cut(s)	118, 416
Cfr13I	GGNCC	1 cut(s)	528
CseI	GACGC	1 cut(s)	251
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
DraIII	CACNNNGTG	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	8, 68
Eco24I	GRGCYC	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	193
Eco72I	CACGTG	1 cut(s)	439
EcoRV	GATATC	1 cut(s)	495
EcoT14I	CCWWGG	2 cut(s)	8, 68
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	8, 68
FaiI	YATR	1 cut(s)	58
FauI	CCCGC	2 cut(s)	175, 272
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	9 cut(s)	14, 17, 90, 93, 147, 202, 205, 457, 517
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	9 cut(s)	14, 17, 90, 93, 147, 202, 205, 457, 517
FspBI	CTAG	1 cut(s)	532
GlaI	GCGC	2 cut(s)	117, 415
GluI	GCNGC	9 cut(s)	14, 17, 90, 93, 147, 202, 205, 457, 517
GsuI	CTGGAG	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	13, 52, 327
HapII	CCGG	2 cut(s)	38, 405
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	118, 416
Hin6I	GCGC	2 cut(s)	116, 414
HinP1I	GCGC	2 cut(s)	116, 414
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	3 cut(s)	158, 227, 362
HpaII	CCGG	2 cut(s)	38, 405
HphI	GGTGA	2 cut(s)	53, 110
Hpy166II	GTNNAC	3 cut(s)	250, 295, 424
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	24, 475
Hpy8I	GTNNAC	3 cut(s)	250, 295, 424
Hpy99I	CGWCG	6 cut(s)	185, 245, 284, 323, 326, 335
HpyCH4III	ACNGT	2 cut(s)	254, 507
HpyCH4IV	ACGT	1 cut(s)	438
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 210, 219, 242, 393, 449
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	438
HspAI	GCGC	2 cut(s)	116, 414
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	2 cut(s)	313, 392
LpnPI	CCDG	7 cut(s)	51, 81, 92, 288, 418, 430, 466
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	532
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	4 cut(s)	143, 153, 184, 502
MhlI	GDGCHC	2 cut(s)	44, 318
MluCI	AATT	2 cut(s)	257, 341
MlyI	GAGTC	2 cut(s)	221, 356
MmeI	TCCRAC	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	135
MspI	CCGG	2 cut(s)	38, 405
MspR9I	CCNGG	1 cut(s)	39
MvnI	CGCG	2 cut(s)	267, 459
MwoI	GCNNNNNNNGC	6 cut(s)	152, 210, 219, 242, 393, 449
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	74
NmeAIII	GCCGAG	1 cut(s)	175
PaqCI	CACCTGC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	3 cut(s)	288, 327, 330
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	158
PflFI	GACNNNGTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	9 cut(s)	15, 18, 91, 94, 148, 203, 206, 458, 518
PleI	GAGTC	2 cut(s)	221, 356
PmaCI	CACGTG	1 cut(s)	439
PmlI	CACGTG	1 cut(s)	439
PpsI	GAGTC	2 cut(s)	221, 356
Ppu21I	YACGTR	1 cut(s)	439
PspCI	CACGTG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	528
PsyI	GACNNNGTC	1 cut(s)	245
SatI	GCNGC	9 cut(s)	14, 17, 90, 93, 147, 202, 205, 457, 517
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	528
SchI	GAGTC	2 cut(s)	221, 356
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	44, 318
SetI	ASST	8 cut(s)	70, 78, 100, 215, 339, 378, 441, 533
SfaNI	GCATC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	528
Sse9I	AATT	2 cut(s)	257, 341
SspMI	CTAG	1 cut(s)	532
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	8, 68
TaaI	ACNGT	2 cut(s)	254, 507
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	2 cut(s)	330, 348
TasI	AATT	2 cut(s)	257, 341
TauI	GCSGC	8 cut(s)	16, 19, 92, 95, 204, 207, 459, 519
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	2 cut(s)	385, 398
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	143, 280
TspRI	CASTG	2 cut(s)	385, 398
Tth111I	GACNNNGTC	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	528
XapI	RAATTY	2 cut(s)	257, 341
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.