Rmu_co8002032.1_g000001

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8002032.1
OG0000184
Physical Location & Seq
Reverse (-)
2 .. 462
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8002032.1_g000001.1.cds

Sequence Viewer

Length: 461 bp
atggccaaaatccaaagctcaccagatctgccatggaccgtccgccttttcatctccgccgtttccttcgcagtcgacacctcttgccgctcaaacttcaccgtcaaccgtcgcctctggaacttgctcgactacaaaccctctcccttaacaaaacctcacagaaacctcaagagctccgacgtcgtcaccgacccttcccgcaacctctggttccgcctatacactcccaccgccgcaaccaccaagaagctccccatcctagtcttcttccacggcggcgggttcgccttcatgtccgccagttcaaaactctacgacgatttttgtcaacgcctcgctcgggagctccccgccatcgtcgtctccgtcaactaccgcctctcaccggagcatcgatatccttgccagtacgacgacggattcgacgtcctcaagttcatcgacggcagcagcagcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

153

Amino Acids

17.43

Weight (kDa)

9.4

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 186, 432
AccBSI CCGCTC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 183, 429
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 2 cut(s) 343, 388
AgsI TTSAA 1 cut(s) 309
AluBI AGCT 4 cut(s) 18, 177, 253, 349
AluI AGCT 4 cut(s) 18, 177, 253, 349
Alw21I GWGCWC 2 cut(s) 179, 351
Alw26I GTCTC 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 450, 453, 456
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 4 cut(s) 12, 91, 181, 378
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 1 cut(s) 36
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 179, 351
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 2 cut(s) 179, 351
BccI CCATC 2 cut(s) 266, 365
BceAI ACGGC 2 cut(s) 44, 292
BcgI CGANNNNNNTGC 2 cut(s) 387, 421
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 1 cut(s) 263
BglII AGATCT 1 cut(s) 25
BisI GCNGC 6 cut(s) 88, 237, 280, 451, 454, 457
BlsI GCNGC 6 cut(s) 89, 238, 281, 452, 455, 458
Bme18I GGWCC 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 215
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 259
BpuEI CTTGAG 2 cut(s) 155, 419
Bsa29I ATCGAT 1 cut(s) 397
BsaHI GRCGYC 2 cut(s) 183, 429
BsaJI CCNNGG 2 cut(s) 32, 274
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 388
Bse1I ACTGG 2 cut(s) 303, 409
BseCI ATCGAT 1 cut(s) 397
BseDI CCNNGG 2 cut(s) 32, 274
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 343, 388
BseNI ACTGG 2 cut(s) 303, 409
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 397
BsiHKAI GWGCWC 2 cut(s) 179, 351
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 343, 388
BsmAI GTCTC 1 cut(s) 370
BsmBI CGTCTC 1 cut(s) 370
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 2 cut(s) 179, 351
Bsp143I GATC 1 cut(s) 25
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 90
BsrI ACTGG 2 cut(s) 303, 409
BssECI CCNNGG 2 cut(s) 32, 274
BssMI GATC 1 cut(s) 25
BssNI GRCGYC 2 cut(s) 183, 429
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 40, 103, 110
BstACI GRCGYC 2 cut(s) 183, 429
BstDSI CCRYGG 2 cut(s) 32, 274
BstF5I GGATG 1 cut(s) 258
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 456
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 397
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 397
BtgI CCRYGG 2 cut(s) 32, 274
BtsCI GGATG 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 36
ClaI ATCGAT 1 cut(s) 397
Csp6I GTAC 1 cut(s) 412
CviAII CATG 2 cut(s) 33, 295
CviJI RGCY 5 cut(s) 5, 18, 177, 253, 349
CviKI_1 RGCY 5 cut(s) 5, 18, 177, 253, 349
CviQI GTAC 1 cut(s) 412
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 4 cut(s) 32, 46, 206, 289
Ecl136II GAGCTC 2 cut(s) 177, 349
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 2 cut(s) 179, 351
Eco32I GATATC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 36
Eco53kI GAGCTC 2 cut(s) 177, 349
Eco88I CYCGRG 1 cut(s) 342
EcoICRI GAGCTC 2 cut(s) 177, 349
EcoRV GATATC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 2 cut(s) 179, 351
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 2 cut(s) 36, 298
FaiI YATR 3 cut(s) 34, 223, 296
FatI CATG 2 cut(s) 32, 294
FauI CCCGC 3 cut(s) 209, 275, 361
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 6 cut(s) 88, 237, 280, 451, 454, 457
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 2 cut(s) 179, 351
Fsp4HI GCNGC 6 cut(s) 88, 237, 280, 451, 454, 457
FspBI CTAG 1 cut(s) 263
GluI GCNGC 6 cut(s) 88, 237, 280, 451, 454, 457
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 389
Hin1I GRCGYC 2 cut(s) 183, 429
Hin1II CATG 2 cut(s) 36, 298
HincII GTYRAC 4 cut(s) 76, 106, 332, 373
HindII GTYRAC 4 cut(s) 76, 106, 332, 373
HinfI GANTC 1 cut(s) 423
HpaII CCGG 1 cut(s) 389
HphI GGTGA 4 cut(s) 12, 91, 181, 378
Hpy166II GTNNAC 4 cut(s) 76, 106, 332, 373
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 3 cut(s) 118, 172, 344
Hpy8I GTNNAC 4 cut(s) 76, 106, 332, 373
Hpy99I CGWCG 9 cut(s) 114, 185, 188, 323, 365, 419, 422, 431, 449
HpyAV CCTTC 3 cut(s) 76, 207, 301
HpyCH4III ACNGT 3 cut(s) 40, 103, 110
HpyCH4IV ACGT 2 cut(s) 183, 429
HpyF10VI GCNNNNNNNGC 1 cut(s) 456
HpySE526I ACGT 2 cut(s) 183, 429
Hsp92I GRCGYC 2 cut(s) 183, 429
Hsp92II CATG 2 cut(s) 36, 298
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 5 cut(s) 182, 258, 346, 354, 391
LpnPI CCDG 6 cut(s) 36, 103, 196, 316, 402, 422
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 263
MaeII ACGT 2 cut(s) 183, 429
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 27
MbiI CCGCTC 1 cut(s) 90
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 259, 262
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 179, 351
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 9 cut(s) 91, 125, 151, 168, 179, 218, 347, 392, 443
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 456
NcoI CCATGG 1 cut(s) 32
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 36, 298
NlaIV GGNNCC 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 187
PcsI WCGNNNNNNNCGW 4 cut(s) 189, 366, 423, 426
PfeI GAWTC 1 cut(s) 423
PflFI GACNNNGTC 1 cut(s) 185
PkrI GCNGC 6 cut(s) 89, 238, 281, 452, 455, 458
Psp124BI GAGCTC 2 cut(s) 179, 351
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SacI GAGCTC 2 cut(s) 179, 351
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 6 cut(s) 88, 237, 280, 451, 454, 457
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 36
SduI GDGCHC 2 cut(s) 179, 351
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 170, 434
SmoI CTYRAG 2 cut(s) 170, 434
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 2 cut(s) 179, 351
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 3 cut(s) 40, 103, 110
TaiI ACGT 2 cut(s) 186, 432
TaqI TCGA 5 cut(s) 75, 129, 397, 426, 444
TauI GCSGC 3 cut(s) 90, 239, 282
TfiI GAWTC 1 cut(s) 423
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 3 cut(s) 450, 453, 456
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 40, 283, 430
TspGWI ACGGA 2 cut(s) 358, 435
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 36
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 263
ZraI GACGTC 2 cut(s) 184, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.