Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8108364.1

Orthogroup ID

OG0000184

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 571

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8108364.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 571 bp

cctctggttccgcttcttcgtcccctctacgacgtcgtcttcccccgcctctttaccggtcgtcgttttcttccacggcggaggctttagctttctcagccccgactcctacgcctacgacgccgtctgccgcaaattcgcccgcgaaatccccgccgttgtagtctccgtcaactaccgcctctccctggagcactgctacccctgccagtacgacgacggcctcgacgtcctcaaattcctcgaccaaaaccccaactccctccccgacctcgctgactgctcccgctgcttcctcgtcggagacagcgtcggcgcgaacattgcccaccacgtggaggtgcgagcctgctgcgagccgtttcgggtcgtgaaaccaatcaggttgatatcgatccaactgttcttcggcggtgaggaacggaccgagtccgagatccgactcgagggtgcgccgctggtgtcggtgacccgaaccgattggctgtggaaggctttcttgacacaaaacccagaatcctgccgcaaaacccagaaacccggtggcttcgttgagactgaggagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

189

Amino Acids

21.22

Weight (kDa)

5.38

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23530
fragaria_vesca	FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica	MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica	Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis	pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis	RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata	RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora	Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii	Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa	Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha	Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana	Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	36, 232
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccII	CGCG	2 cut(s)	145, 318
AclWI	GGATC	2 cut(s)	389, 431
AcsI	RAATTY	2 cut(s)	135, 237
AcvI	CACGTG	1 cut(s)	335
AcyI	GRCGYC	3 cut(s)	33, 121, 229
AdeI	CACNNNGTG	1 cut(s)	335
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	188, 335, 338, 446
AgeI	ACCGGT	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	3 cut(s)	170, 298, 549
AlwI	GGATC	2 cut(s)	389, 431
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	289, 352
ApoI	RAATTY	2 cut(s)	135, 237
AsiGI	ACCGGT	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	318, 455
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	2 cut(s)	426, 479
AvaI	CYCGRG	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	424
BbrPI	CACGTG	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	276, 339
BceAI	ACGGC	5 cut(s)	92, 108, 141, 236, 344
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	3 cut(s)	170, 298, 549
BisI	GCNGC	5 cut(s)	131, 290, 353, 456, 524
BlsI	GCNGC	5 cut(s)	132, 291, 354, 457, 525
Bme1390I	CCNGG	2 cut(s)	189, 541
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	189, 541
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	541
Bsa29I	ATCGAT	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	3 cut(s)	33, 121, 229
BsaJI	CCNNGG	2 cut(s)	74, 187
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	6 cut(s)	168, 198, 243, 273, 295, 325
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 335, 338, 446
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	322
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	74, 187
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	4 cut(s)	188, 335, 338, 446
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	110, 550
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	276, 339
Bsh1236I	CGCG	2 cut(s)	145, 318
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	223
BshTI	ACCGGT	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	393
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	57, 541
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	4 cut(s)	188, 335, 338, 446
BsmAI	GTCTC	3 cut(s)	170, 298, 549
BsmFI	GGGAC	1 cut(s)	6
BsnI	GGCC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	394, 436
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	2 cut(s)	109, 551
BspDI	ATCGAT	1 cut(s)	393
BspFNI	CGCG	2 cut(s)	145, 318
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	389, 431
BsrDI	GCAATG	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	74, 187
BssMI	GATC	2 cut(s)	394, 436
BssNI	GRCGYC	3 cut(s)	33, 121, 229
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	403
BstACI	GRCGYC	3 cut(s)	33, 121, 229
BstBAI	YACGTR	1 cut(s)	335
BstC8I	GCNNGC	4 cut(s)	143, 346, 350, 357
BstDEI	CTNAG	2 cut(s)	96, 559
BstDSI	CCRYGG	1 cut(s)	74
BstEII	GGTNACC	1 cut(s)	467
BstFNI	CGCG	2 cut(s)	145, 318
BstHHI	GCGC	2 cut(s)	318, 455
BstKTI	GATC	2 cut(s)	397, 439
BstMAI	GTCTC	3 cut(s)	170, 298, 549
BstMBI	GATC	2 cut(s)	394, 436
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 120, 205, 289, 324
BstNI	CCWGG	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	187, 539
BstUI	CGCG	2 cut(s)	145, 318
BstV1I	GCAGC	2 cut(s)	276, 339
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	223
BsuTUI	ATCGAT	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	4 cut(s)	143, 346, 350, 357
CfoI	GCGC	2 cut(s)	318, 455
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	424
ClaI	ATCGAT	1 cut(s)	393
CpoI	CGGWCCG	1 cut(s)	424
CseI	GACGC	2 cut(s)	129, 299
Csp6I	GTAC	1 cut(s)	212
CspAI	ACCGGT	1 cut(s)	56
CspI	CGGWCCG	1 cut(s)	424
CviJI	RGCY	9 cut(s)	85, 91, 100, 223, 348, 359, 485, 495, 547
CviKI_1	RGCY	9 cut(s)	85, 91, 100, 223, 348, 359, 485, 495, 547
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	96, 559
DpnI	GATC	2 cut(s)	396, 438
DpnII	GATC	2 cut(s)	394, 436
DraIII	CACNNNGTG	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	424
Eco72I	CACGTG	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	391
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	6
FauI	CCCGC	4 cut(s)	53, 150, 161, 294
Fnu4HI	GCNGC	5 cut(s)	131, 290, 353, 456, 524
Fsp4HI	GCNGC	5 cut(s)	131, 290, 353, 456, 524
GlaI	GCGC	2 cut(s)	317, 454
GluI	GCNGC	5 cut(s)	131, 290, 353, 456, 524
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	2 cut(s)	57, 541
HgaI	GACGC	2 cut(s)	129, 299
HhaI	GCGC	2 cut(s)	318, 455
Hin1I	GRCGYC	3 cut(s)	33, 121, 229
Hin6I	GCGC	2 cut(s)	316, 453
HinP1I	GCGC	2 cut(s)	316, 453
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HinfI	GANTC	4 cut(s)	105, 429, 442, 516
HpaII	CCGG	2 cut(s)	57, 541
HphI	GGTGA	2 cut(s)	426, 479
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	3 cut(s)	303, 434, 441
Hpy188III	TCNNGA	2 cut(s)	371, 500
Hpy8I	GTNNAC	1 cut(s)	173
Hpy99I	CGWCG	9 cut(s)	35, 38, 66, 123, 219, 222, 231, 303, 315
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	3 cut(s)	33, 229, 334
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 120, 205, 289, 324
HpyF3I	CTNAG	2 cut(s)	96, 559
HpySE526I	ACGT	3 cut(s)	33, 229, 334
Hsp92I	GRCGYC	3 cut(s)	33, 121, 229
HspAI	GCGC	2 cut(s)	316, 453
Kzo9I	GATC	2 cut(s)	394, 436
LmnI	GCTCC	2 cut(s)	191, 288
Lsp1109I	GCAGC	2 cut(s)	276, 339
MaeII	ACGT	3 cut(s)	33, 229, 334
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	2 cut(s)	396, 438
MboI	GATC	2 cut(s)	394, 436
MboII	GAAGA	4 cut(s)	8, 31, 62, 398
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	2 cut(s)	135, 237
MlyI	GAGTC	3 cut(s)	99, 436, 438
MmeI	TCCRAC	3 cut(s)	281, 422, 464
MroXI	GAANNNNTTC	1 cut(s)	495
MspA1I	CMGCKG	2 cut(s)	289, 458
MspI	CCGG	2 cut(s)	57, 541
MspR9I	CCNGG	2 cut(s)	189, 541
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	2 cut(s)	145, 318
MwoI	GCNNNNNNNGC	5 cut(s)	97, 120, 205, 289, 324
NciI	CCSGG	1 cut(s)	541
NdeII	GATC	2 cut(s)	394, 436
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	467
PaeR7I	CTCGAG	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	3 cut(s)	223, 226, 307
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	516
PflFI	GACNNNGTC	4 cut(s)	35, 123, 309, 428
PflMI	CCANNNNNTGG	1 cut(s)	335
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	5 cut(s)	132, 291, 354, 457, 525
PleI	GAGTC	3 cut(s)	99, 436, 437
PmaCI	CACGTG	1 cut(s)	335
PmlI	CACGTG	1 cut(s)	335
PpsI	GAGTC	3 cut(s)	99, 436, 437
Ppu21I	YACGTR	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	335
PspEI	GGTNACC	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	424
PspXI	VCTCGAGB	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	436
PsyI	GACNNNGTC	4 cut(s)	35, 123, 309, 428
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
Rsr2I	CGGWCCG	1 cut(s)	424
RsrII	CGGWCCG	1 cut(s)	424
SatI	GCNGC	5 cut(s)	131, 290, 353, 456, 524
Sau3AI	GATC	2 cut(s)	394, 436
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	3 cut(s)	99, 436, 438
ScrFI	CCNGG	2 cut(s)	189, 541
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	7 cut(s)	36, 93, 232, 274, 337, 343, 387
Sfr274I	CTCGAG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	424
SlaI	CTCGAG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	2 cut(s)	135, 237
StyD4I	CCNGG	2 cut(s)	187, 539
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	3 cut(s)	36, 232, 337
TaqI	TCGA	4 cut(s)	226, 244, 393, 445
TaqII	GACCGA	1 cut(s)	441
TasI	AATT	2 cut(s)	135, 237
TauI	GCSGC	3 cut(s)	133, 458, 526
TfiI	GAWTC	1 cut(s)	516
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	2 cut(s)	289, 352
Tsp45I	GTSAC	1 cut(s)	467
TspGWI	ACGGA	2 cut(s)	158, 437
TspRI	CASTG	1 cut(s)	201
Tth111I	GACNNNGTC	4 cut(s)	35, 123, 309, 428
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	2 cut(s)	135, 237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XhoI	CTCGAG	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	495
ZraI	GACGTC	2 cut(s)	34, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.