Rorug05G0494500

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000184
Physical Location & Seq
Reverse (-)
67698930 .. 67699634
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0494500.1

Sequence Viewer

Length: 705 bp
ATGGCGGCTTCTACCTCCGCTGAGCCAAGGGCGATCTGTCCTTGGCCGTTTCTGAATCTGGCGTCGGCCACGGAGAAGCCTTCGCCGCCTCTGGCACAGGCCGCCACACCGAAGACCTTTGCTTCCGTCCTTTCTGGGTCTGTTGAGTCCACGGTGGCTCTTAGCCAACTACCTACTCCAGTCATTCGTGGTGATATGACTTACGTCAAGATTAATGAAGCGCTGTATCAGGAACAGTTGAAAACTTTCAAGACTAATTTGATTGGTCGACTACTTCAGCGTAAGGGATCGACTCCATTAAAACTTCATGATTTGAAGGCCTCTCTTACTTCTCTTTGGAAACCCTCATCACCATGGCGGTTGGTTCCTTTAGGGAGGGCCTATTTTGATATTCACTTTGCTACAGAGGAAGACATGCGGAGAGTTTGGGGTGGAGGTACCTGTACGTTGGCTAGTGGGTTGTTTCGTCTATCACAATGGCAGCCTGATTTCAAGCCTGGGGACACTCTCCCTCAGACCCATTCTCAAATCTGGGTTAGGTTTTATGGACTGAGTCAAGATTACTGGCACCCGCAACATCTAATGGAGATTGCTCGTGGAGTAGGCACACCTTTGCAATTGGACAGGGCAACTAAAGAAAGAGAATTTGGCTACTTTGCTAGGGTTCTTGTGGATGTTGGAAAGAAAATTTGGCTACTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

234

Amino Acids

26.26

Weight (kDa)

9.51

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 83 - 166 1.2e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 2 cut(s) 437, 567
AccI GTMKAC 1 cut(s) 268
AciI CCGC 7 cut(s) 5, 18, 86, 102, 358, 418, 572
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 2 cut(s) 44, 66
AcsI RAATTY 2 cut(s) 644, 687
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 439, 445
AfeI AGCGCT 1 cut(s) 222
AgsI TTSAA 4 cut(s) 241, 250, 316, 493
AjnI CCWGG 1 cut(s) 496
AjuI GAANNNNNNNTTGG 4 cut(s) 630, 662, 673, 705
AlwI GGATC 1 cut(s) 295
Aor51HI AGCGCT 1 cut(s) 222
AoxI GGCC 5 cut(s) 44, 66, 99, 318, 378
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 2 cut(s) 644, 687
AseI ATTAAT 1 cut(s) 213
Asp700I GAANNNNTTC 1 cut(s) 245
Asp718I GGTACC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 203, 342
BanI GGYRCC 2 cut(s) 437, 567
BauI CACGAG 1 cut(s) 594
BbsI GAAGAC 2 cut(s) 119, 417
BbvI GCAGC 1 cut(s) 493
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 498
BfaI CTAG 3 cut(s) 453, 660, 703
BfmI CTRYAG 1 cut(s) 402
BfoI RGCGCY 1 cut(s) 224
BisI GCNGC 4 cut(s) 6, 86, 102, 482
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 4 cut(s) 7, 87, 103, 483
Bme1390I CCNGG 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 3 cut(s) 366, 439, 569
BmrFI CCNGG 1 cut(s) 498
BoxI GACNNNNGTC 1 cut(s) 203
BpiI GAAGAC 2 cut(s) 119, 417
BpmI CTGGAG 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 6 cut(s) 26, 41, 69, 150, 353, 497
Bse1I ACTGG 2 cut(s) 179, 569
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 6 cut(s) 26, 41, 69, 150, 353, 497
BseGI GGATG 1 cut(s) 679
BseMII CTCAG 3 cut(s) 12, 527, 542
BseNI ACTGG 2 cut(s) 179, 569
BseXI GCAGC 1 cut(s) 493
BshFI GGCC 5 cut(s) 46, 68, 101, 320, 380
BshNI GGYRCC 2 cut(s) 437, 567
BslFI GGGAC 1 cut(s) 515
BsmFI GGGAC 1 cut(s) 515
BsnI GGCC 5 cut(s) 46, 68, 101, 320, 380
Bsp143I GATC 2 cut(s) 33, 287
Bsp1720I GCTNAGC 1 cut(s) 21
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 7 cut(s) 5, 18, 86, 102, 358, 418, 572
BspANI GGCC 5 cut(s) 46, 68, 101, 320, 380
BspCNI CTCAG 3 cut(s) 13, 526, 543
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 366, 439, 569
BspPI GGATC 1 cut(s) 295
BspT107I GGYRCC 2 cut(s) 437, 567
BsrI ACTGG 2 cut(s) 179, 569
BssECI CCNNGG 6 cut(s) 26, 41, 69, 150, 353, 497
BssMI GATC 2 cut(s) 33, 287
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 3 cut(s) 26, 41, 353
Bst2BI CACGAG 1 cut(s) 594
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 154, 237
BstACI GRCGYC 1 cut(s) 62
BstDEI CTNAG 4 cut(s) 21, 161, 513, 551
BstDSI CCRYGG 3 cut(s) 69, 150, 353
BstF5I GGATG 1 cut(s) 679
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 2 cut(s) 36, 290
BstMBI GATC 2 cut(s) 33, 287
BstMWI GCNNNNNNNGC 2 cut(s) 85, 101
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 1 cut(s) 418
BstPAI GACNNNNGTC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 496
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 493
BstV2I GAAGAC 2 cut(s) 119, 417
BsuRI GGCC 5 cut(s) 46, 68, 101, 320, 380
BtgI CCRYGG 3 cut(s) 69, 150, 353
BtsCI GGATG 1 cut(s) 679
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 378
CseI GACGC 1 cut(s) 51
Csp6I GTAC 2 cut(s) 438, 444
CviAII CATG 3 cut(s) 308, 354, 415
CviQI GTAC 2 cut(s) 438, 444
DdeI CTNAG 4 cut(s) 21, 161, 513, 551
DpnI GATC 2 cut(s) 35, 289
DpnII GATC 2 cut(s) 33, 287
EaeI YGGCCR 2 cut(s) 44, 66
Eco130I CCWWGG 3 cut(s) 26, 41, 353
Eco147I AGGCCT 1 cut(s) 320
Eco47III AGCGCT 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 3 cut(s) 26, 41, 353
ErhI CCWWGG 3 cut(s) 26, 41, 353
FaeI CATG 3 cut(s) 311, 357, 418
FaiI YATR 5 cut(s) 197, 309, 355, 416, 546
FaqI GGGAC 1 cut(s) 515
FatI CATG 3 cut(s) 307, 353, 414
FauI CCCGC 1 cut(s) 579
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 4 cut(s) 6, 86, 102, 482
FokI GGATG 1 cut(s) 686
Fsp4HI GCNGC 4 cut(s) 6, 86, 102, 482
FspBI CTAG 3 cut(s) 453, 660, 703
GlaI GCGC 1 cut(s) 222
GluI GCNGC 4 cut(s) 6, 86, 102, 482
GsuI CTGGAG 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 5 cut(s) 46, 68, 101, 320, 380
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 311, 357, 418
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HinfI GANTC 4 cut(s) 55, 146, 292, 553
HphI GGTGA 2 cut(s) 203, 342
Hpy166II GTNNAC 2 cut(s) 150, 269
Hpy188I TCNGA 2 cut(s) 54, 516
Hpy188III TCNNGA 5 cut(s) 208, 230, 250, 308, 557
Hpy8I GTNNAC 2 cut(s) 150, 269
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 90, 310
HpyCH4III ACNGT 2 cut(s) 154, 237
HpyCH4IV ACGT 2 cut(s) 204, 446
HpyCH4V TGCA 1 cut(s) 616
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 101
HpyF3I CTNAG 4 cut(s) 21, 161, 513, 551
HpySE526I ACGT 2 cut(s) 204, 446
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 311, 357, 418
HspAI GCGC 1 cut(s) 221
KpnI GGTACC 1 cut(s) 441
Kzo9I GATC 2 cut(s) 33, 287
Lsp1109I GCAGC 1 cut(s) 493
MaeI CTAG 3 cut(s) 453, 660, 703
MaeII ACGT 2 cut(s) 204, 446
MalI GATC 2 cut(s) 35, 289
MboI GATC 2 cut(s) 33, 287
MboII GAAGA 2 cut(s) 124, 422
MfeI CAATTG 1 cut(s) 617
MluCI AATT 4 cut(s) 256, 617, 644, 687
MlyI GAGTC 3 cut(s) 155, 286, 562
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 8 cut(s) 25, 99, 331, 355, 369, 400, 428, 522
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 2 cut(s) 213, 299
MslI CAYNNNNRTG 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 498
MunI CAATTG 1 cut(s) 617
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 85, 101
NcoI CCATGG 1 cut(s) 353
NdeII GATC 2 cut(s) 33, 287
NlaIII CATG 3 cut(s) 311, 357, 418
NlaIV GGNNCC 3 cut(s) 366, 439, 569
NspI RCATGY 1 cut(s) 418
PagI TCATGA 1 cut(s) 307
PceI AGGCCT 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 55
PflFI GACNNNGTC 1 cut(s) 552
PkrI GCNGC 4 cut(s) 7, 87, 103, 483
PleI GAGTC 3 cut(s) 154, 286, 561
PpsI GAGTC 3 cut(s) 154, 286, 561
PshAI GACNNNNGTC 1 cut(s) 203
PshBI ATTAAT 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 3 cut(s) 366, 439, 569
PspPI GGNCC 1 cut(s) 378
PsyI GACNNNGTC 1 cut(s) 552
RsaI GTAC 2 cut(s) 439, 445
RsaNI GTAC 2 cut(s) 438, 444
RseI CAYNNNNRTG 1 cut(s) 352
SalI GTCGAC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 213, 299
SatI GCNGC 4 cut(s) 6, 86, 102, 482
Sau3AI GATC 2 cut(s) 33, 287
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 3 cut(s) 155, 286, 562
ScrFI CCNGG 1 cut(s) 498
SetI ASST 9 cut(s) 17, 119, 175, 207, 439, 443, 449, 542, 613
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 352
Sse9I AATT 4 cut(s) 256, 617, 644, 687
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 7 cut(s) 5, 18, 86, 102, 358, 418, 572
SspMI CTAG 3 cut(s) 453, 660, 703
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 496
StyI CCWWGG 3 cut(s) 26, 41, 353
TaaI ACNGT 2 cut(s) 154, 237
TaiI ACGT 2 cut(s) 207, 449
TaqI TCGA 2 cut(s) 268, 290
TasI AATT 4 cut(s) 256, 617, 644, 687
TauI GCSGC 3 cut(s) 8, 88, 104
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 213, 299
Tru9I TTAA 2 cut(s) 213, 299
TseI GCWGC 1 cut(s) 481
TspDTI ATGAA 2 cut(s) 231, 296
TspGWI ACGGA 2 cut(s) 86, 115
Tth111I GACNNNGTC 1 cut(s) 552
VspI ATTAAT 1 cut(s) 213
XapI RAATTY 2 cut(s) 644, 687
XceI RCATGY 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 3 cut(s) 453, 660, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.