Rroxscaffold_1G00028400

Steryl acetyl hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000184
Physical Location & Seq
Forward (+)
36191084 .. 36192076
993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028400.1

Sequence Viewer

Length: 597 bp
ATGACGACGACATCGGCGCCACAACTTCCATGCAAGCTCCGCTTCTTACTCTTCATCCTCTCCATTCTCCTCGACGCCGCTCGCCGCTCCAACGGCACCGTCAACCGCCATAGCGCCGGCGGCAACGTGGCTCACCACGTGGCAGTAAAGGCCAGTGATCACGAGTTTTCCAAAATGAAGGTTATTGGTGTTATAGGGATACAACCGTTTTTTGGAGGGGAAGAGAGGACTGAATCAGAAACCAAGCTGACCAAGGCTCTTTTAATTACTCTGGAGCGAACCGACTGGTACTGGAAGGCGCTTTTGCCGGAAGGGAGGGATAGAGACCACCCAGTGGTTCATGTATTCGGTCCACAGTCAGATGGTGTTTTGGGGAAGAAGTTTCCGGCGACGATCGTTTTCATGGGAGGGTTTGATCCTTTACAAGACTGGCAAAAGAGATACTACGAGGGGTTGAAGAAAGCTGGGAAAGAAGCTTACTTGGTCGAGTACCCGAACTCGTTTCATGGGTTTTACTGTTTTCCTGAACTGAAGGAGTCTTCATTATTAATTGAGGAGGTGAAAGATTTCATCGAGAAGCAATCAGCTCCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

198

Amino Acids

22.35

Weight (kDa)

7.81

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 37 - 172 3.1e-28 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 16, 95
AccB7I CCANNNNNTGG 1 cut(s) 334
AccBSI CCGCTC 2 cut(s) 80, 87
AciI CCGC 5 cut(s) 40, 78, 85, 106, 120
AclWI GGATC 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 551
AcvI CACGTG 1 cut(s) 139
AcyI GRCGYC 2 cut(s) 17, 75
AdeI CACNNNGTG 2 cut(s) 139, 334
AfaI GTAC 2 cut(s) 290, 491
AfiI CCNNNNNNNGG 2 cut(s) 212, 334
AgsI TTSAA 1 cut(s) 457
AluBI AGCT 5 cut(s) 37, 247, 464, 476, 587
AluI AGCT 5 cut(s) 37, 247, 464, 476, 587
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 1 cut(s) 410
AoxI GGCC 1 cut(s) 150
AseI ATTAAT 1 cut(s) 548
Asp700I GAANNNNTTC 1 cut(s) 566
AspLEI GCGC 3 cut(s) 19, 116, 301
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 125, 571
AvaII GGWCC 1 cut(s) 350
BaeI ACNNNNGTAYC 2 cut(s) 191, 224
BanI GGYRCC 2 cut(s) 16, 95
BauI CACGAG 1 cut(s) 161
BbrPI CACGTG 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 531
BccI CCATC 1 cut(s) 356
BceAI ACGGC 1 cut(s) 109
BciVI GTATCC 1 cut(s) 192
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 318
BfoI RGCGCY 3 cut(s) 20, 117, 302
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 3 cut(s) 78, 85, 121
BlsI GCNGC 3 cut(s) 79, 86, 122
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 18, 97
BmrI ACTGGG 1 cut(s) 326
BmuI ACTGGG 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 531
BpmI CTGGAG 1 cut(s) 293
BsaAI YACGTR 1 cut(s) 139
BsaHI GRCGYC 2 cut(s) 17, 75
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 334
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 5 cut(s) 153, 290, 296, 332, 434
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 212, 334
BseNI ACTGG 5 cut(s) 153, 290, 296, 332, 434
BseRI GAGGAG 3 cut(s) 59, 569, 579
BseYI CCCAGC 1 cut(s) 464
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 2 cut(s) 16, 95
BsiEI CGRYCG 1 cut(s) 396
BsiSI CCGG 3 cut(s) 117, 308, 386
BslI CCNNNNNNNGG 2 cut(s) 212, 334
BsmAI GTCTC 1 cut(s) 318
BsnI GGCC 1 cut(s) 152
Bso31I GGTCTC 1 cut(s) 318
Bsp143I GATC 3 cut(s) 157, 393, 415
BspACI CCGC 5 cut(s) 40, 78, 85, 106, 120
BspANI GGCC 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 18, 97
BspPI GGATC 1 cut(s) 410
BspT107I GGYRCC 2 cut(s) 16, 95
BspTNI GGTCTC 1 cut(s) 318
BsrBI CCGCTC 2 cut(s) 80, 87
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 5 cut(s) 153, 290, 296, 332, 434
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 157, 393, 415
BssNI GRCGYC 2 cut(s) 17, 75
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 4 cut(s) 100, 207, 357, 518
Bst6I CTCTTC 2 cut(s) 56, 216
BstACI GRCGYC 2 cut(s) 17, 75
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 3 cut(s) 35, 82, 118
BstF5I GGATG 1 cut(s) 54
BstH2I RGCGCY 3 cut(s) 20, 117, 302
BstHHI GCGC 3 cut(s) 19, 116, 301
BstKTI GATC 3 cut(s) 160, 396, 418
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 3 cut(s) 157, 393, 415
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 4 cut(s) 39, 93, 120, 149
BstV2I GAAGAC 1 cut(s) 531
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 160, 339
Cac8I GCNNGC 3 cut(s) 35, 82, 118
CfoI GCGC 3 cut(s) 19, 116, 301
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 350
CseI GACGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 289, 490
CviAII CATG 4 cut(s) 30, 341, 403, 506
CviJI RGCY 8 cut(s) 37, 131, 152, 247, 257, 464, 476, 587
CviKI_1 RGCY 8 cut(s) 37, 131, 152, 247, 257, 464, 476, 587
CviQI GTAC 2 cut(s) 289, 490
DinI GGCGCC 1 cut(s) 18
DpnI GATC 3 cut(s) 159, 395, 417
DpnII GATC 3 cut(s) 157, 393, 415
DraIII CACNNNGTG 2 cut(s) 139, 334
Eam1104I CTCTTC 2 cut(s) 56, 216
EarI CTCTTC 2 cut(s) 56, 216
Eco130I CCWWGG 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 551
Eco72I CACGTG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 252
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 4 cut(s) 33, 344, 406, 509
FaiI YATR 6 cut(s) 31, 111, 194, 342, 404, 507
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 4 cut(s) 29, 340, 402, 505
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 78, 85, 121
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 78, 85, 121
GlaI GCGC 3 cut(s) 18, 115, 300
GluI GCNGC 3 cut(s) 78, 85, 121
GsaI CCCAGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 3 cut(s) 20, 117, 302
HaeIII GGCC 1 cut(s) 152
HapII CCGG 3 cut(s) 117, 308, 386
HgaI GACGC 1 cut(s) 83
HhaI GCGC 3 cut(s) 19, 116, 301
Hin1I GRCGYC 2 cut(s) 17, 75
Hin1II CATG 4 cut(s) 33, 344, 406, 509
Hin6I GCGC 3 cut(s) 17, 114, 299
HinP1I GCGC 3 cut(s) 17, 114, 299
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 2 cut(s) 233, 536
HpaII CCGG 3 cut(s) 117, 308, 386
HphI GGTGA 2 cut(s) 125, 571
Hpy166II GTNNAC 2 cut(s) 103, 353
Hpy188I TCNGA 2 cut(s) 238, 361
Hpy188III TCNNGA 4 cut(s) 161, 272, 524, 574
Hpy8I GTNNAC 2 cut(s) 103, 353
Hpy99I CGWCG 3 cut(s) 10, 77, 394
HpyAV CCTTC 4 cut(s) 172, 289, 305, 526
HpyCH4III ACNGT 4 cut(s) 100, 207, 357, 518
HpyCH4IV ACGT 2 cut(s) 126, 138
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 93, 120, 149
HpySE526I ACGT 2 cut(s) 126, 138
Hsp92I GRCGYC 2 cut(s) 17, 75
Hsp92II CATG 4 cut(s) 33, 344, 406, 509
HspAI GCGC 3 cut(s) 17, 114, 299
KasI GGCGCC 1 cut(s) 16
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 157, 393, 415
LmnI GCTCC 4 cut(s) 42, 92, 274, 592
MaeII ACGT 2 cut(s) 126, 138
MalI GATC 3 cut(s) 159, 395, 417
MbiI CCGCTC 2 cut(s) 80, 87
MboI GATC 3 cut(s) 157, 393, 415
MboII GAAGA 5 cut(s) 43, 233, 388, 469, 531
MluCI AATT 2 cut(s) 264, 549
Mly113I GGCGCC 1 cut(s) 17
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 9 cut(s) 68, 80, 209, 219, 309, 401, 442, 547, 550
MreI CGCCGGCG 1 cut(s) 116
MroNI GCCGGC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 566
MseI TTAA 2 cut(s) 263, 548
MspI CCGG 3 cut(s) 117, 308, 386
MwoI GCNNNNNNNGC 4 cut(s) 39, 93, 120, 149
NaeI GCCGGC 1 cut(s) 118
NarI GGCGCC 1 cut(s) 17
NdeII GATC 3 cut(s) 157, 393, 415
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 4 cut(s) 33, 344, 406, 509
NlaIV GGNNCC 2 cut(s) 18, 97
PdiI GCCGGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 566
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 3 cut(s) 79, 86, 122
Ple19I CGATCG 1 cut(s) 396
PleI GAGTC 1 cut(s) 544
PluTI GGCGCC 1 cut(s) 20
PmaCI CACGTG 1 cut(s) 139
PmlI CACGTG 1 cut(s) 139
PpsI GAGTC 1 cut(s) 544
Ppu21I YACGTR 1 cut(s) 139
PshBI ATTAAT 1 cut(s) 548
PspCI CACGTG 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 464
PspN4I GGNNCC 2 cut(s) 18, 97
PspPI GGNCC 1 cut(s) 350
PvuI CGATCG 1 cut(s) 396
RsaI GTAC 2 cut(s) 290, 491
RsaNI GTAC 2 cut(s) 289, 490
SaqAI TTAA 2 cut(s) 263, 548
SatI GCNGC 3 cut(s) 78, 85, 121
Sau3AI GATC 3 cut(s) 157, 393, 415
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 545
SetI ASST 9 cut(s) 39, 129, 141, 183, 249, 466, 478, 561, 589
SfoI GGCGCC 1 cut(s) 18
SgrAI CRCCGGYG 1 cut(s) 116
SinI GGWCC 1 cut(s) 350
Sse9I AATT 2 cut(s) 264, 549
SsiI CCGC 5 cut(s) 40, 78, 85, 106, 120
SspDI GGCGCC 1 cut(s) 16
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 4 cut(s) 100, 207, 357, 518
TaiI ACGT 2 cut(s) 129, 141
TaqI TCGA 3 cut(s) 72, 486, 573
TaqII GACCGA 1 cut(s) 338
TasI AATT 2 cut(s) 264, 549
TauI GCSGC 3 cut(s) 80, 87, 123
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 263, 548
Tru9I TTAA 2 cut(s) 263, 548
TscAI CASTG 2 cut(s) 160, 339
TspDTI ATGAA 7 cut(s) 43, 191, 329, 391, 494, 531, 559
TspRI CASTG 2 cut(s) 160, 339
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 350
VspI ATTAAT 1 cut(s) 548
XmnI GAANNNNTTC 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.