FvH4_3g28580

Steryl acetyl hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000184
Physical Location & Seq
Reverse (-)
21590035 .. 21590601
567 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28580.t1

Sequence Viewer

Length: 567 bp
ATGAAGTTTGTCGATACATCAAATTTCGAGGGCTTTTCGAGTAACGCTGACCTTAGCAAGTGTTTCCTTGCCGGAGACAGCGCCGGCGGCAACATGGCTCACCACCTGGCTGTCATGGCGGGTAAGCACGAGTTTTCTAGGATAAAATTGATTGGCATCATAGGGATACAACCGTTTTTTGGCGGGGAAGAGAGGACTGAATCAGAAACCAAGCTTAACAACAAGGCTTTGATACTCTCTCTGGAAATAACTGACTGGTACTGGAAGGCGTTTTTGCCGGTCGGGGAGGACCGAGATCACTCTGTGGTGAATGTATTCGGGCCCCGATCAGATGATGTTCTAGGGTTGAACTTTCCGGCGACGATCGTTTTCATTGGAGGGTTTGATCTATTAAAAGACGGGCAAAAGAGATACTGCGAGGGGTTGAAGAAAGCTGGAAAAGAAGTTTACATGGTGGAGTACCCGAAAGCATTTCATGGTTTTTACTGTTTTCCTCAGCTGAAGGAGTGGTCTTTATTAGTTGAGGTGCTGAAGGACTTTATTGAGAAGCAATTGGATGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

189

Amino Acids

21.13

Weight (kDa)

5.68

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 13 - 162 1.5e-33 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 87, 119, 183
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 2 cut(s) 521, 551
AdeI CACNNNGTG 1 cut(s) 304
AfaI GTAC 2 cut(s) 260, 461
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 2 cut(s) 349, 427
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 3 cut(s) 214, 434, 499
AluI AGCT 3 cut(s) 214, 434, 499
Alw26I GTCTC 1 cut(s) 69
AoxI GGCC 1 cut(s) 320
ApaI GGGCCC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 314
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 3 cut(s) 289, 320, 321
AsuHPI GGTGA 2 cut(s) 92, 319
AvaII GGWCC 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 324
BaeI ACNNNNGTAYC 2 cut(s) 158, 191
BanII GRGCYC 1 cut(s) 324
BauI CACGAG 1 cut(s) 128
BbvCI CCTCAGC 1 cut(s) 495
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 138, 341
BfoI RGCGCY 1 cut(s) 84
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 3 cut(s) 289, 320, 321
BmiI GGNNCC 2 cut(s) 322, 323
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 2 cut(s) 165, 547
Bpu10I CCTNAGC 2 cut(s) 53, 495
BsaBI GATNNNNATC 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 2 cut(s) 83, 277
Bse1I ACTGG 2 cut(s) 260, 266
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 562
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 2 cut(s) 260, 266
BseSI GKGCMC 1 cut(s) 324
Bsh1285I CGRYCG 2 cut(s) 282, 366
BshFI GGCC 1 cut(s) 322
BsiEI CGRYCG 2 cut(s) 282, 366
BsiSI CCGG 4 cut(s) 72, 84, 278, 356
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 69
BsnI GGCC 1 cut(s) 322
Bsp120I GGGCCC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 4 cut(s) 295, 326, 363, 385
BspACI CCGC 3 cut(s) 87, 119, 183
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 322, 323
BsrFI RCCGGY 2 cut(s) 83, 277
BsrI ACTGG 2 cut(s) 260, 266
BssAI RCCGGY 2 cut(s) 83, 277
BssMI GATC 4 cut(s) 295, 326, 363, 385
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 174, 488
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 53, 495
BstF5I GGATG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 4 cut(s) 298, 329, 366, 388
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 4 cut(s) 295, 326, 363, 385
BstMCI CGRYCG 2 cut(s) 282, 366
BstMWI GCNNNNNNNGC 2 cut(s) 87, 116
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 324
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 2 cut(s) 83, 277
Cfr13I GGNCC 3 cut(s) 289, 320, 321
Csp6I GTAC 2 cut(s) 259, 460
CviAII CATG 4 cut(s) 94, 115, 451, 476
CviJI RGCY 8 cut(s) 33, 98, 110, 214, 227, 322, 434, 499
CviKI_1 RGCY 8 cut(s) 33, 98, 110, 214, 227, 322, 434, 499
CviQI GTAC 2 cut(s) 259, 460
DdeI CTNAG 2 cut(s) 53, 495
DpnI GATC 4 cut(s) 297, 328, 365, 387
DpnII GATC 4 cut(s) 295, 326, 363, 385
DraIII CACNNNGTG 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 521, 551
EcoO109I RGGNCCY 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 4 cut(s) 97, 118, 454, 479
FaiI YATR 5 cut(s) 95, 116, 161, 452, 477
FatI CATG 4 cut(s) 93, 114, 450, 475
FauI CCCGC 2 cut(s) 112, 176
Fnu4HI GCNGC 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 2 cut(s) 138, 341
GlaI GCGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 1 cut(s) 322
HapII CCGG 4 cut(s) 72, 84, 278, 356
HhaI GCGC 1 cut(s) 83
Hin1II CATG 4 cut(s) 97, 118, 454, 479
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 1 cut(s) 200
HpaII CCGG 4 cut(s) 72, 84, 278, 356
HphI GGTGA 2 cut(s) 92, 319
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 2 cut(s) 205, 331
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 1 cut(s) 364
HpyAV CCTTC 3 cut(s) 259, 496, 526
HpyCH4III ACNGT 2 cut(s) 174, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 116
HpyF3I CTNAG 2 cut(s) 53, 495
Hsp92II CATG 4 cut(s) 97, 118, 454, 479
HspAI GCGC 1 cut(s) 81
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 4 cut(s) 295, 326, 363, 385
LweI GCATC 2 cut(s) 165, 547
MaeI CTAG 2 cut(s) 138, 341
MaeIII GTNAC 1 cut(s) 41
MalI GATC 4 cut(s) 297, 328, 365, 387
MboI GATC 4 cut(s) 295, 326, 363, 385
MboII GAAGA 2 cut(s) 200, 439
MfeI CAATTG 1 cut(s) 551
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 3 cut(s) 22, 146, 551
MnlI CCTC 7 cut(s) 22, 186, 280, 371, 412, 504, 517
MreI CGCCGGCG 1 cut(s) 83
MroNI GCCGGC 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 2 cut(s) 216, 392
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 4 cut(s) 72, 84, 278, 356
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 551
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 87, 116
NaeI GCCGGC 1 cut(s) 85
NdeII GATC 4 cut(s) 295, 326, 363, 385
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 4 cut(s) 97, 118, 454, 479
NlaIV GGNNCC 2 cut(s) 322, 323
PdiI GCCGGC 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 89
Ple19I CGATCG 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 322, 323
PspOMI GGGCCC 1 cut(s) 320
PspPI GGNCC 3 cut(s) 289, 320, 321
PvuI CGATCG 1 cut(s) 366
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 2 cut(s) 260, 461
RsaNI GTAC 2 cut(s) 259, 460
SaqAI TTAA 2 cut(s) 216, 392
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 4 cut(s) 295, 326, 363, 385
Sau96I GGNCC 3 cut(s) 289, 320, 321
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 324
SetI ASST 6 cut(s) 54, 108, 216, 436, 501, 528
SfaNI GCATC 2 cut(s) 165, 547
SgrAI CRCCGGYG 1 cut(s) 83
SinI GGWCC 1 cut(s) 289
Sse9I AATT 3 cut(s) 22, 146, 551
SsiI CCGC 3 cut(s) 87, 119, 183
SspMI CTAG 2 cut(s) 138, 341
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 174, 488
TaqI TCGA 3 cut(s) 12, 27, 38
TaqII GACCGA 1 cut(s) 306
TasI AATT 3 cut(s) 22, 146, 551
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 216, 392
Tru9I TTAA 2 cut(s) 216, 392
TspDTI ATGAA 3 cut(s) 17, 361, 464
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 2 cut(s) 138, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.