Rroxscaffold_7G00217380

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000184
Physical Location & Seq
Reverse (-)
67846757 .. 67848101
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217380.1

Sequence Viewer

Length: 420 bp
ATGTTGGCCATTCAGCCGTTTTTCGGCGGAGAAGAGCGGACGGAATCGGAGAAGAGACTGAAGAGTGTGCCGCTGGTGAACGTAGAGCGGACGGACTGGATGTGGAAGGCGTTTTTGCCGGAGTGGTCGGATCGGGACCATCCGGTGGTGAATGTGTTCGGGCCGAACGCGGTGGATATTTCGGGGGTGGATTTTCCGGCGACGATTGTGGTTGTTGGGGGATTTGATCCGTTGCAGGATTGGCAGAAGAGATACTACGAGGGATTGAAGGAACGCGGGAAACAAGCGGAGCTGGTGGTGTTTCCAAATGCCATTCATACTTTCTATGCTTATCCTGAGTTGGATGACTCTTCTGTGTTTATTAACAAAGTCAGGGATTTCGTGCAAGTGCAATCAGCTAATGCCACTTTCAGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

139

Amino Acids

15.99

Weight (kDa)

5.15

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 3 - 109 2.6e-19 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 145
AccBSI CCGCTC 2 cut(s) 37, 88
AccII CGCG 2 cut(s) 170, 276
AciI CCGC 7 cut(s) 27, 37, 71, 88, 170, 276, 287
AclWI GGATC 2 cut(s) 138, 221
AcoI YGGCCR 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 23, 145
AgsI TTSAA 1 cut(s) 268
AluBI AGCT 2 cut(s) 292, 398
AluI AGCT 2 cut(s) 292, 398
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 2 cut(s) 138, 221
AoxI GGCC 2 cut(s) 6, 161
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 136, 161
AsuHPI GGTGA 2 cut(s) 88, 160
AvaII GGWCC 1 cut(s) 136
BalI TGGCCA 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BccI CCATC 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 49
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 136, 161
BmiI GGNNCC 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 145
Bse1I ACTGG 1 cut(s) 101
BseGI GGATG 3 cut(s) 105, 139, 349
BseLI CCNNNNNNNGG 2 cut(s) 23, 145
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 101
Bsh1236I CGCG 2 cut(s) 170, 276
BshFI GGCC 2 cut(s) 8, 163
BsiSI CCGG 3 cut(s) 119, 143, 197
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 23, 145
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 2 cut(s) 8, 163
Bsp143I GATC 2 cut(s) 130, 226
BspACI CCGC 7 cut(s) 27, 37, 71, 88, 170, 276, 287
BspANI GGCC 2 cut(s) 8, 163
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 2 cut(s) 170, 276
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 2 cut(s) 138, 221
BspQI GCTCTTC 1 cut(s) 27
BsrBI CCGCTC 2 cut(s) 37, 88
BsrI ACTGG 1 cut(s) 101
BssMI GATC 2 cut(s) 130, 226
Bst6I CTCTTC 5 cut(s) 27, 47, 56, 242, 355
BstDEI CTNAG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 105, 139, 349
BstFNI CGCG 2 cut(s) 170, 276
BstKTI GATC 2 cut(s) 133, 229
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 130, 226
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstUI CGCG 2 cut(s) 170, 276
BsuRI GGCC 2 cut(s) 8, 163
BtsCI GGATG 3 cut(s) 105, 139, 349
Cfr13I GGNCC 2 cut(s) 136, 161
CviJI RGCY 5 cut(s) 8, 16, 163, 292, 398
CviKI_1 RGCY 5 cut(s) 8, 16, 163, 292, 398
DdeI CTNAG 1 cut(s) 336
DpnI GATC 2 cut(s) 132, 228
DpnII GATC 2 cut(s) 130, 226
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 5 cut(s) 27, 47, 56, 242, 355
EarI CTCTTC 5 cut(s) 27, 47, 56, 242, 355
EciI GGCGGA 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 80
FaiI YATR 2 cut(s) 318, 327
FaqI GGGAC 1 cut(s) 149
FauI CCCGC 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 3 cut(s) 112, 126, 356
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 2 cut(s) 8, 163
HapII CCGG 3 cut(s) 119, 143, 197
HinfI GANTC 2 cut(s) 44, 347
HpaII CCGG 3 cut(s) 119, 143, 197
HphI GGTGA 2 cut(s) 88, 160
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 49, 130, 413
Hpy188III TCNNGA 2 cut(s) 134, 335
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 100, 262
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 235, 385, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 81
Kzo9I GATC 2 cut(s) 130, 226
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 9 cut(s) 59, 82, 132, 156, 210, 221, 278, 348, 358
MaeII ACGT 1 cut(s) 81
MalI GATC 2 cut(s) 132, 228
MbiI CCGCTC 2 cut(s) 37, 88
MboI GATC 2 cut(s) 130, 226
MboII GAAGA 5 cut(s) 44, 64, 73, 259, 342
MlsI TGGCCA 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 8
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 2 cut(s) 108, 321
MnlI CCTC 1 cut(s) 253
Mox20I TGGCCA 1 cut(s) 8
MroXI GAANNNNTTC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 8
MseI TTAA 2 cut(s) 363, 418
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 3 cut(s) 119, 143, 197
MvnI CGCG 2 cut(s) 170, 276
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 2 cut(s) 130, 226
NlaIV GGNNCC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 44
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 2 cut(s) 136, 161
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 363, 418
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 2 cut(s) 130, 226
Sau96I GGNCC 2 cut(s) 136, 161
SchI GAGTC 1 cut(s) 341
SetI ASST 3 cut(s) 84, 294, 400
SinI GGWCC 1 cut(s) 136
SsiI CCGC 7 cut(s) 27, 37, 71, 88, 170, 276, 287
TaiI ACGT 1 cut(s) 84
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 363, 418
Tru9I TTAA 2 cut(s) 363, 418
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 3 cut(s) 56, 107, 219
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.