Rmu_sc0000704.1_g000038

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000704.1
OG0000184
Physical Location & Seq
Reverse (-)
150043 .. 151030
988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000704.1_g000038.1.cds

Sequence Viewer

Length: 924 bp
atgggctggaaacccaacaccgtccgcctcttcatctccgccgcttcctttgcagtcgacgcccctcgcggctcaaacctcaccatcaaccatcgcctctttaacttgtttgactacaaaccctcccccttaacaaaacctcacaagaatctcaagagctccgacatcgtcgtcgccgccgacccttcccgcaacctctggttccacctctacagtcccaccgctgctaccaccaagctccccatcatcgtcttcttccacggcggcgggttcgccttcatgtccgccacttctacgactgcttctatcaacgcctcgcttgccagctccccgccctcatcgtctccgtcaactaccgcctcgtgccggaacatcgatatctatgctagtacaacgacggcagtgttttctggtcggagacagcgttggcgggaatatagcgcaccacgtggagatcagagagagcgagcactagtttcgggatctaaaggtggtcggaatcttggcgattcagtagttttttggcagagaggaacggacggaatcggagacgagactgaagagtgtgccgctggtgaatgtagagcggacggactggatgtggaaggcgttttgccggaggggtcggatcgggaccacccggtggtcaatgtgttctggcctaacgaggtggatatttcgggggttgattttccggcgacgattgtgtttgttgggggatttgatccattgcaggattggcaaaagaggtactacgagggattgaagaaacgcgggaaccaagcggagctggtggtgtttccaaatgccattcatactttctatgcttataccaagttggatgactcttccgtgtttattaacagagttagggatttcgtacaaaacgcaattagtgtaaaagtaaaatggaattggaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

307

Amino Acids

33.89

Weight (kDa)

8.38

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 643
AccBSI CCGCTC 1 cut(s) 587
AccI GTMKAC 1 cut(s) 57
AccII CGCG 2 cut(s) 69, 774
AclWI GGATC 3 cut(s) 490, 636, 719
AcuI CTGAAG 1 cut(s) 579
AcvI CACGTG 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 60
AdeI CACNNNGTG 2 cut(s) 449, 643
AfaI GTAC 3 cut(s) 391, 752, 882
AfiI CCNNNNNNNGG 2 cut(s) 366, 643
AgsI TTSAA 1 cut(s) 766
AhlI ACTAGT 1 cut(s) 472
AluBI AGCT 4 cut(s) 159, 238, 327, 790
AluI AGCT 4 cut(s) 159, 238, 327, 790
Alw21I GWGCWC 2 cut(s) 161, 472
Alw26I GTCTC 4 cut(s) 348, 412, 543, 548
AlwI GGATC 3 cut(s) 490, 636, 719
AoxI GGCC 1 cut(s) 659
ApeKI GCWGC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 634
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 2 cut(s) 73, 587
AvaII GGWCC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 161
BauI CACGAG 1 cut(s) 361
BbrPI CACGTG 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 244
Bbv12I GWGCWC 2 cut(s) 161, 472
BbvI GCAGC 1 cut(s) 211
BccI CCATC 3 cut(s) 92, 99, 251
BceAI ACGGC 2 cut(s) 277, 414
BcgI CGANNNNNNTGC 4 cut(s) 365, 399, 459, 493
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 4 cut(s) 348, 412, 543, 548
BcuI ACTAGT 1 cut(s) 472
BfaI CTAG 2 cut(s) 387, 473
BfmI CTRYAG 1 cut(s) 211
BisI GCNGC 6 cut(s) 42, 70, 177, 225, 265, 570
BlsI GCNGC 6 cut(s) 43, 71, 178, 226, 266, 571
Bme1390I CCNGG 1 cut(s) 641
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 3 cut(s) 203, 635, 779
BmrFI CCNGG 1 cut(s) 641
BpiI GAAGAC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 641
Bsa29I ATCGAT 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 449
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 409, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 643
Bse1I ACTGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 728
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 604, 847
BseLI CCNNNNNNNGG 2 cut(s) 366, 643
BseMI GCAATG 1 cut(s) 728
BseNI ACTGG 1 cut(s) 600
BseXI GCAGC 1 cut(s) 211
Bsh1236I CGCG 2 cut(s) 69, 774
BshFI GGCC 1 cut(s) 661
BshVI ATCGAT 1 cut(s) 375
BsiHKAI GWGCWC 2 cut(s) 161, 472
BsiSI CCGG 4 cut(s) 367, 617, 641, 695
BslFI GGGAC 2 cut(s) 201, 647
BslI CCNNNNNNNGG 2 cut(s) 366, 643
BsmAI GTCTC 4 cut(s) 348, 412, 543, 548
BsmBI CGTCTC 2 cut(s) 348, 543
BsmFI GGGAC 2 cut(s) 201, 647
BsnI GGCC 1 cut(s) 661
Bsp1286I GDGCHC 2 cut(s) 161, 472
Bsp143I GATC 4 cut(s) 454, 482, 628, 724
BspANI GGCC 1 cut(s) 661
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 2 cut(s) 69, 774
BspLI GGNNCC 3 cut(s) 203, 635, 779
BspPI GGATC 3 cut(s) 490, 636, 719
BsrBI CCGCTC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 728
BsrI ACTGG 1 cut(s) 600
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 4 cut(s) 454, 482, 628, 724
BssNI GRCGYC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 361
Bst2BI CACGAG 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 22, 215
Bst6I CTCTTC 3 cut(s) 35, 555, 853
BstACI GRCGYC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 321, 325, 468
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 2 cut(s) 604, 847
BstFNI CGCG 2 cut(s) 69, 774
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 4 cut(s) 457, 485, 631, 727
BstMAI GTCTC 4 cut(s) 348, 412, 543, 548
BstMBI GATC 4 cut(s) 454, 482, 628, 724
BstMWI GCNNNNNNNGC 4 cut(s) 50, 59, 320, 739
BstSCI CCNGG 1 cut(s) 639
BstSFI CTRYAG 1 cut(s) 211
BstUI CGCG 2 cut(s) 69, 774
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 482
BstYI RGATCY 1 cut(s) 482
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 1 cut(s) 661
BsuTUI ATCGAT 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 2 cut(s) 604, 847
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 3 cut(s) 321, 325, 468
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 634
ClaI ATCGAT 1 cut(s) 375
CseI GACGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 390, 751, 881
CviAII CATG 1 cut(s) 280
CviJI RGCY 7 cut(s) 6, 72, 159, 238, 327, 661, 790
CviKI_1 RGCY 7 cut(s) 6, 72, 159, 238, 327, 661, 790
CviQI GTAC 3 cut(s) 390, 751, 881
DpnI GATC 4 cut(s) 456, 484, 630, 726
DpnII GATC 4 cut(s) 454, 482, 628, 724
DraIII CACNNNGTG 2 cut(s) 449, 643
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 3 cut(s) 35, 555, 853
EarI CTCTTC 3 cut(s) 35, 555, 853
EciI GGCGGA 3 cut(s) 14, 28, 274
Ecl136II GAGCTC 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 634
Eco53kI GAGCTC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 579
Eco72I CACGTG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 159
EcoRV GATATC 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 161
Esp3I CGTCTC 2 cut(s) 348, 543
FaeI CATG 1 cut(s) 283
FaiI YATR 6 cut(s) 281, 384, 438, 816, 825, 831
FaqI GGGAC 2 cut(s) 201, 647
FatI CATG 1 cut(s) 279
FauI CCCGC 5 cut(s) 197, 260, 339, 423, 767
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 6 cut(s) 42, 70, 177, 225, 265, 570
FokI GGATG 2 cut(s) 611, 854
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 6 cut(s) 42, 70, 177, 225, 265, 570
FspBI CTAG 2 cut(s) 387, 473
GlaI GCGC 1 cut(s) 442
GluI GCNGC 6 cut(s) 42, 70, 177, 225, 265, 570
HaeIII GGCC 1 cut(s) 661
HapII CCGG 4 cut(s) 367, 617, 641, 695
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HincII GTYRAC 2 cut(s) 58, 351
HindII GTYRAC 2 cut(s) 58, 351
HinfI GANTC 5 cut(s) 148, 499, 509, 543, 845
HpaII CCGG 4 cut(s) 367, 617, 641, 695
HphI GGTGA 2 cut(s) 73, 587
Hpy166II GTNNAC 2 cut(s) 58, 351
Hpy188I TCNGA 6 cut(s) 163, 417, 459, 498, 548, 628
Hpy188III TCNNGA 3 cut(s) 154, 480, 632
Hpy8I GTNNAC 2 cut(s) 58, 351
Hpy99I CGWCG 5 cut(s) 62, 173, 176, 400, 703
HpyAV CCTTC 3 cut(s) 195, 286, 599
HpyCH4III ACNGT 2 cut(s) 22, 215
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 2 cut(s) 53, 733
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 59, 320, 739
HpySE526I ACGT 1 cut(s) 448
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 1 cut(s) 441
Kzo9I GATC 4 cut(s) 454, 482, 628, 724
LmnI GCTCC 4 cut(s) 164, 243, 332, 787
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 2 cut(s) 387, 473
MaeII ACGT 1 cut(s) 448
MalI GATC 4 cut(s) 456, 484, 630, 726
MbiI CCGCTC 1 cut(s) 587
MboI GATC 4 cut(s) 454, 482, 628, 724
MboII GAAGA 6 cut(s) 22, 244, 247, 572, 778, 840
MflI RGATCY 1 cut(s) 482
MhlI GDGCHC 2 cut(s) 161, 472
MluCI AATT 3 cut(s) 891, 913, 919
MlyI GAGTC 1 cut(s) 839
MmeI TCCRAC 5 cut(s) 186, 395, 476, 606, 819
MseI TTAA 3 cut(s) 102, 131, 861
MspA1I CMGCKG 2 cut(s) 224, 572
MspI CCGG 4 cut(s) 367, 617, 641, 695
MspR9I CCNGG 1 cut(s) 641
MvnI CGCG 2 cut(s) 69, 774
MwoI GCNNNNNNNGC 4 cut(s) 50, 59, 320, 739
NciI CCSGG 1 cut(s) 641
NdeII GATC 4 cut(s) 454, 482, 628, 724
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 3 cut(s) 203, 635, 779
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 421
PfeI GAWTC 4 cut(s) 148, 499, 509, 543
PflFI GACNNNGTC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 643
PkrI GCNGC 6 cut(s) 43, 71, 178, 226, 266, 571
PleI GAGTC 1 cut(s) 839
PmaCI CACGTG 1 cut(s) 449
PmlI CACGTG 1 cut(s) 449
PpsI GAGTC 1 cut(s) 839
Ppu21I YACGTR 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 161
PspCI CACGTG 1 cut(s) 449
PspN4I GGNNCC 3 cut(s) 203, 635, 779
PspPI GGNCC 1 cut(s) 634
PsuI RGATCY 1 cut(s) 482
PsyI GACNNNGTC 1 cut(s) 167
RsaI GTAC 3 cut(s) 391, 752, 882
RsaNI GTAC 3 cut(s) 390, 751, 881
SacI GAGCTC 1 cut(s) 161
SalI GTCGAC 1 cut(s) 56
SaqAI TTAA 3 cut(s) 102, 131, 861
SatI GCNGC 6 cut(s) 42, 70, 177, 225, 265, 570
Sau3AI GATC 4 cut(s) 454, 482, 628, 724
Sau96I GGNCC 1 cut(s) 634
SchI GAGTC 1 cut(s) 839
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 2 cut(s) 161, 472
SfcI CTRYAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 634
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SpeI ACTAGT 1 cut(s) 472
Sse9I AATT 3 cut(s) 891, 913, 919
SspMI CTAG 2 cut(s) 387, 473
SstI GAGCTC 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 639
TaaI ACNGT 2 cut(s) 22, 215
TaiI ACGT 1 cut(s) 451
TaqI TCGA 2 cut(s) 57, 375
TasI AATT 3 cut(s) 891, 913, 919
TatI WGTACW 1 cut(s) 389
TauI GCSGC 5 cut(s) 44, 72, 179, 267, 572
TfiI GAWTC 4 cut(s) 148, 499, 509, 543
Tru1I TTAA 3 cut(s) 102, 131, 861
Tru9I TTAA 3 cut(s) 102, 131, 861
TscAI CASTG 1 cut(s) 408
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 3 cut(s) 22, 268, 803
TspGWI ACGGA 5 cut(s) 336, 551, 555, 606, 841
TspRI CASTG 1 cut(s) 408
Tth111I GACNNNGTC 1 cut(s) 167
Van91I CCANNNNNTGG 1 cut(s) 643
VpaK11BI GGWCC 1 cut(s) 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 735
XmiI GTMKAC 1 cut(s) 57
XspI CTAG 2 cut(s) 387, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.