Rorug06G0439500

Carboxylesterase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
57291735 .. 57293407
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0439500.1

Sequence Viewer

Length: 213 bp
ATGGGAGGAGGACATGGAGATGGCATAACGTACAAGGGCGTTACCATCCATCAGCCGAAGCGGTGGCACACTGTCACCGGAAAAGGCCTTTGCGCCGTCATGTGGTTTTGGGTACTTTACAGGGCCAAGCAAGATGGTCCTGTAGTGCTGGGTTGGAGACATCCCTGGGAGGGCCATGATGATCATGGTCATGGGCATGATGAACATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

7.97

Weight (kDa)

7.17

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AfaI GTAC 2 cut(s) 32, 114
AfiI CCNNNNNNNGG 2 cut(s) 102, 170
AjnI CCWGG 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 151
AoxI GGCC 3 cut(s) 85, 123, 172
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 3 cut(s) 123, 137, 172
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 137
BccI CCATC 4 cut(s) 14, 53, 57, 128
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 166
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 3 cut(s) 123, 137, 172
BmrFI CCNGG 1 cut(s) 166
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 164, 165
BsaWI WCCGGW 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 170
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 164, 165
BseGI GGATG 2 cut(s) 45, 160
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 2 cut(s) 102, 170
BseRI GAGGAG 1 cut(s) 21
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 3 cut(s) 87, 125, 174
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 102, 170
BsmAI GTCTC 1 cut(s) 151
BsnI GGCC 3 cut(s) 87, 125, 174
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 61
BspANI GGCC 3 cut(s) 87, 125, 174
BssECI CCNNGG 2 cut(s) 164, 165
BssMI GATC 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 73
BstF5I GGATG 2 cut(s) 45, 160
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 141
BsuRI GGCC 3 cut(s) 87, 125, 174
BtsCI GGATG 2 cut(s) 45, 160
BtsIMutI CAGTG 1 cut(s) 69
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 123, 137, 172
Csp6I GTAC 2 cut(s) 31, 113
CviAII CATG 6 cut(s) 14, 100, 176, 185, 191, 197
CviJI RGCY 4 cut(s) 55, 87, 125, 174
CviKI_1 RGCY 4 cut(s) 55, 87, 125, 174
CviQI GTAC 2 cut(s) 31, 113
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eco147I AGGCCT 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 164
FaeI CATG 6 cut(s) 17, 103, 179, 188, 194, 200
FaiI YATR 7 cut(s) 15, 26, 101, 177, 186, 192, 198
FatI CATG 6 cut(s) 13, 99, 175, 184, 190, 196
FbaI TGATCA 1 cut(s) 181
FokI GGATG 2 cut(s) 32, 147
GlaI GCGC 1 cut(s) 94
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 3 cut(s) 87, 125, 174
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 95
Hin1II CATG 6 cut(s) 17, 103, 179, 188, 194, 200
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 6 cut(s) 17, 103, 179, 188, 194, 200
HspAI GCGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 6 cut(s) 91, 106, 134, 151, 153, 178
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 40, 73
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 1 cut(s) 163
MslI CAYNNNNRTG 3 cut(s) 18, 189, 195
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
NdeII GATC 1 cut(s) 181
NlaIII CATG 6 cut(s) 17, 103, 179, 188, 194, 200
NmuCI GTSAC 1 cut(s) 73
PasI CCCWGGG 1 cut(s) 165
PceI AGGCCT 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 164
PspPI GGNCC 3 cut(s) 123, 137, 172
RsaI GTAC 2 cut(s) 32, 114
RsaNI GTAC 2 cut(s) 31, 113
RseI CAYNNNNRTG 3 cut(s) 18, 189, 195
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 3 cut(s) 123, 137, 172
ScrFI CCNGG 1 cut(s) 166
SetI ASST 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 3 cut(s) 18, 189, 195
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 1 cut(s) 61
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 32
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.