Rmu_sc0001209.1_g000044

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001209.1
OG0000184
Physical Location & Seq
Reverse (-)
207557 .. 209281
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001209.1_g000044.1.cds

Sequence Viewer

Length: 843 bp
atgaatgtgattgggtgcgttcacattgaagagaagcaaaacatcaaatgtcatcaagccgattgggattgggggcgaattctcgaagaagacgccggagtggaggaggctggggcagaagatggcgagcttgtgaagggaggaccagccgccgggaggctcggaggagacccagttcgattcactcgtcattatcagtcccctgaagttccgattggggattctccgccgaggacggttgatgagggtggtgggtcttccttattgtacgacgacggtttcgacgtcctcaagttcatcgacgacagtcaaagcagcttgttcgagggcgcgaatctcgcgcagtgttttctggccggggacagctccggcgggaacatagcgcaccacgtggcgatcagagcgagcgggcacgagtttcgggatctgaaagtggtcgggatcttggcgattcagccgtttttcggcggagaagagcggacggaatcggagaagaaactgaagagtgtgccgctggtgaacgtagagcggacggactggatgtggaaggcgtttttgccggaagggtcggatcgggatcatccggtggtgaatgtgttcgggccgaacgcggtggatatttcgggggtggattttccggcgacgattgtgtttgttgggggatttgatccgttgcaggattggcagaagaggtactacgagggattgaagaaacgcgggaaacaagcggagctggtggtgtttccaaatgccattcatactttctatgcttatcctgagttggatgactcttctgcttttattaacagagtcagggatttcgtacaaaacgcaattagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

280

Amino Acids

30.81

Weight (kDa)

4.78

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
AccBSI CCGCTC 3 cut(s) 408, 478, 529
AccII CGCG 4 cut(s) 332, 341, 611, 717
AclWI GGATC 5 cut(s) 432, 449, 579, 585, 662
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 225, 521
AcvI CACGTG 1 cut(s) 391
AcyI GRCGYC 2 cut(s) 93, 285
AdeI CACNNNGTG 1 cut(s) 391
AfaI GTAC 3 cut(s) 269, 695, 825
AfiI CCNNNNNNNGG 3 cut(s) 152, 156, 464
AgsI TTSAA 2 cut(s) 29, 709
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 4 cut(s) 130, 318, 366, 733
AluI AGCT 4 cut(s) 130, 318, 366, 733
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 5 cut(s) 432, 449, 579, 585, 662
AoxI GGCC 2 cut(s) 354, 602
ApeKI GCWGC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 78
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
Asp700I GAANNNNTTC 1 cut(s) 596
AspLEI GCGC 3 cut(s) 332, 343, 385
AspS9I GGNCC 2 cut(s) 143, 602
AsuC2I CCSGG 2 cut(s) 154, 358
AsuHPI GGTGA 2 cut(s) 529, 601
AvaII GGWCC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 414
BarI GAAGNNNNNNTAC 2 cut(s) 680, 712
BauI CACGAG 1 cut(s) 413
BbrPI CACGTG 1 cut(s) 391
BbsI GAAGAC 2 cut(s) 96, 249
BbvI GCAGC 1 cut(s) 327
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 442
BcgI CGANNNNNNTGC 4 cut(s) 304, 338, 401, 435
BcnI CCSGG 2 cut(s) 154, 358
BcoDI GTCTC 1 cut(s) 162
BisI GCNGC 3 cut(s) 150, 316, 512
BlsI GCNGC 3 cut(s) 151, 317, 513
Bme1390I CCNGG 2 cut(s) 154, 358
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 143, 602
BmrFI CCNGG 2 cut(s) 154, 358
BmrI ACTGGG 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 167
BoxI GACNNNNGTC 1 cut(s) 306
BpiI GAAGAC 2 cut(s) 96, 249
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 2 cut(s) 154, 358
BsaAI YACGTR 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 576
BsaHI GRCGYC 2 cut(s) 93, 285
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 230, 357
BsaWI WCCGGW 1 cut(s) 583
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 156, 464
Bse1I ACTGG 2 cut(s) 173, 542
Bse8I GATNNNNATC 1 cut(s) 576
BseDI CCNNGG 2 cut(s) 230, 357
BseGI GGATG 3 cut(s) 546, 580, 790
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 3 cut(s) 152, 156, 464
BseMII CTCAG 1 cut(s) 768
BseNI ACTGG 2 cut(s) 173, 542
BseRI GAGGAG 2 cut(s) 119, 180
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 1 cut(s) 327
BseYI CCCAGC 1 cut(s) 110
Bsh1236I CGCG 4 cut(s) 332, 341, 611, 717
BshFI GGCC 2 cut(s) 356, 604
BsiSI CCGG 7 cut(s) 96, 153, 357, 369, 560, 584, 638
BslFI GGGAC 2 cut(s) 184, 374
BslI CCNNNNNNNGG 3 cut(s) 152, 156, 464
BsmAI GTCTC 1 cut(s) 162
BsmFI GGGAC 2 cut(s) 184, 374
BsnI GGCC 2 cut(s) 356, 604
Bso31I GGTCTC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 6 cut(s) 396, 424, 441, 571, 577, 667
BspANI GGCC 2 cut(s) 356, 604
BspCNI CTCAG 1 cut(s) 769
BspFNI CGCG 4 cut(s) 332, 341, 611, 717
BspPI GGATC 5 cut(s) 432, 449, 579, 585, 662
BspQI GCTCTTC 1 cut(s) 468
BspTNI GGTCTC 1 cut(s) 162
BsrBI CCGCTC 3 cut(s) 408, 478, 529
BsrI ACTGG 2 cut(s) 173, 542
BssECI CCNNGG 2 cut(s) 230, 357
BssMI GATC 6 cut(s) 396, 424, 441, 571, 577, 667
BssNI GRCGYC 2 cut(s) 93, 285
BssSI CACGAG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 238, 278, 308
Bst6I CTCTTC 5 cut(s) 24, 468, 497, 683, 796
BstACI GRCGYC 2 cut(s) 93, 285
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 3 cut(s) 128, 406, 410
BstDEI CTNAG 1 cut(s) 777
BstF5I GGATG 3 cut(s) 546, 580, 790
BstFNI CGCG 4 cut(s) 332, 341, 611, 717
BstHHI GCGC 3 cut(s) 332, 343, 385
BstKTI GATC 6 cut(s) 399, 427, 444, 574, 580, 670
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 6 cut(s) 396, 424, 441, 571, 577, 667
BstMWI GCNNNNNNNGC 3 cut(s) 338, 401, 682
BstPAI GACNNNNGTC 1 cut(s) 306
BstSCI CCNGG 2 cut(s) 152, 356
BstSLI GKGCMC 1 cut(s) 414
BstUI CGCG 4 cut(s) 332, 341, 611, 717
BstV1I GCAGC 1 cut(s) 327
BstV2I GAAGAC 2 cut(s) 96, 249
BstX2I RGATCY 2 cut(s) 424, 441
BstYI RGATCY 2 cut(s) 424, 441
BsuRI GGCC 2 cut(s) 356, 604
BtsCI GGATG 3 cut(s) 546, 580, 790
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 350
Cac8I GCNNGC 3 cut(s) 128, 406, 410
CfoI GCGC 3 cut(s) 332, 343, 385
Cfr13I GGNCC 2 cut(s) 143, 602
CseI GACGC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 268, 694, 824
CviQI GTAC 3 cut(s) 268, 694, 824
DdeI CTNAG 1 cut(s) 777
DpnI GATC 6 cut(s) 398, 426, 443, 573, 579, 669
DpnII GATC 6 cut(s) 396, 424, 441, 571, 577, 667
DraIII CACNNNGTG 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 5 cut(s) 24, 468, 497, 683, 796
EarI CTCTTC 5 cut(s) 24, 468, 497, 683, 796
EciI GGCGGA 2 cut(s) 216, 483
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 2 cut(s) 225, 521
Eco72I CACGTG 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 78
FaiI YATR 3 cut(s) 380, 759, 768
FaqI GGGAC 2 cut(s) 184, 374
FauI CCCGC 3 cut(s) 365, 401, 710
Fnu4HI GCNGC 3 cut(s) 150, 316, 512
FokI GGATG 3 cut(s) 553, 567, 797
Fsp4HI GCNGC 3 cut(s) 150, 316, 512
GlaI GCGC 3 cut(s) 331, 342, 384
GluI GCNGC 3 cut(s) 150, 316, 512
GsaI CCCAGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 356, 604
HapII CCGG 7 cut(s) 96, 153, 357, 369, 560, 584, 638
HgaI GACGC 1 cut(s) 101
HhaI GCGC 3 cut(s) 332, 343, 385
Hin1I GRCGYC 2 cut(s) 93, 285
Hin6I GCGC 3 cut(s) 330, 341, 383
HinP1I GCGC 3 cut(s) 330, 341, 383
HinfI GANTC 7 cut(s) 180, 221, 334, 451, 485, 788, 810
HpaII CCGG 7 cut(s) 96, 153, 357, 369, 560, 584, 638
HphI GGTGA 2 cut(s) 529, 601
Hpy166II GTNNAC 2 cut(s) 22, 520
Hpy188I TCNGA 6 cut(s) 164, 213, 401, 429, 490, 571
Hpy188III TCNNGA 5 cut(s) 83, 422, 439, 575, 776
Hpy8I GTNNAC 2 cut(s) 22, 520
Hpy99I CGWCG 5 cut(s) 275, 278, 287, 305, 646
HpyAV CCTTC 3 cut(s) 130, 541, 557
HpyCH4III ACNGT 3 cut(s) 238, 278, 308
HpyCH4IV ACGT 3 cut(s) 285, 390, 522
HpyCH4V TGCA 1 cut(s) 676
HpyF10VI GCNNNNNNNGC 3 cut(s) 338, 401, 682
HpyF3I CTNAG 1 cut(s) 777
HpySE526I ACGT 3 cut(s) 285, 390, 522
Hsp92I GRCGYC 2 cut(s) 93, 285
HspAI GCGC 3 cut(s) 330, 341, 383
Kzo9I GATC 6 cut(s) 396, 424, 441, 571, 577, 667
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 371, 730
Lsp1109I GCAGC 1 cut(s) 327
MaeII ACGT 3 cut(s) 285, 390, 522
MalI GATC 6 cut(s) 398, 426, 443, 573, 579, 669
MbiI CCGCTC 3 cut(s) 408, 478, 529
MboI GATC 6 cut(s) 396, 424, 441, 571, 577, 667
MflI RGATCY 2 cut(s) 424, 441
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 2 cut(s) 78, 834
MlyI GAGTC 2 cut(s) 782, 819
MmeI TCCRAC 2 cut(s) 549, 762
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 2 cut(s) 804, 841
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 7 cut(s) 96, 153, 357, 369, 560, 584, 638
MspR9I CCNGG 2 cut(s) 154, 358
MvnI CGCG 4 cut(s) 332, 341, 611, 717
MwoI GCNNNNNNNGC 3 cut(s) 338, 401, 682
NciI CCSGG 2 cut(s) 154, 358
NdeII GATC 6 cut(s) 396, 424, 441, 571, 577, 667
NmeAIII GCCGAG 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 3 cut(s) 184, 279, 282
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 5 cut(s) 180, 221, 334, 451, 485
PkrI GCNGC 3 cut(s) 151, 317, 513
PleI GAGTC 2 cut(s) 782, 818
PmaCI CACGTG 1 cut(s) 391
PmlI CACGTG 1 cut(s) 391
PpsI GAGTC 2 cut(s) 782, 818
Ppu21I YACGTR 1 cut(s) 391
PshAI GACNNNNGTC 1 cut(s) 306
PspCI CACGTG 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 143, 602
PsuI RGATCY 2 cut(s) 424, 441
RsaI GTAC 3 cut(s) 269, 695, 825
RsaNI GTAC 3 cut(s) 268, 694, 824
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 804, 841
SatI GCNGC 3 cut(s) 150, 316, 512
Sau3AI GATC 6 cut(s) 396, 424, 441, 571, 577, 667
Sau96I GGNCC 2 cut(s) 143, 602
SchI GAGTC 2 cut(s) 782, 819
ScrFI CCNGG 2 cut(s) 154, 358
SduI GDGCHC 1 cut(s) 414
SetI ASST 8 cut(s) 132, 288, 320, 368, 393, 525, 695, 735
SinI GGWCC 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 78, 834
StyD4I CCNGG 2 cut(s) 152, 356
TaaI ACNGT 3 cut(s) 238, 278, 308
TaiI ACGT 3 cut(s) 288, 393, 525
TaqI TCGA 5 cut(s) 84, 178, 282, 300, 324
TasI AATT 2 cut(s) 78, 834
TauI GCSGC 2 cut(s) 152, 514
TfiI GAWTC 5 cut(s) 180, 221, 334, 451, 485
Tru1I TTAA 2 cut(s) 804, 841
Tru9I TTAA 2 cut(s) 804, 841
TscAI CASTG 1 cut(s) 350
TseI GCWGC 1 cut(s) 315
TspDTI ATGAA 3 cut(s) 17, 286, 746
TspGWI ACGGA 3 cut(s) 497, 548, 660
TspRI CASTG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 596
ZraI GACGTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.