Rh5BG421800

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000184
Physical Location & Seq
Reverse (-)
68178562 .. 68178909
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG421800.1

Sequence Viewer

Length: 348 bp
ATGGGTCGGGGCGCGCTGGGGTTGGACTCTACGGACTGGTGTTGGCGGGCGGTTTTACCGGACGGGTCGGACAGAGACCACCCGTTTGTGAATTTTTCGGGGCCCAATGCGGTGGACATTTCGGGTCGTGGGTACCCGGATACGCTTTGTTTTATTGGGGGGTTGGATTCGTTGAAGGATTGGGGGAGGAGGTACTGTGAGTGGTTGAAGAAGAGTGGGAAGAAGGTGGAGGTTGTGGAGTATCCGAATGCGATCCATGGGTTTATGTCGGTTCAGTGCGAACCCGAATATGGGATGTTTATAGAAGAGGTGAAGAATTTCATGAAGAAGCAGAACATGGCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

115

Amino Acids

13.03

Weight (kDa)

6.09

Isoelectric Point (pI)

27.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 8 - 89 1.1e-16 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AccII CGCG 1 cut(s) 14
AciI CCGC 3 cut(s) 46, 50, 110
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 2 cut(s) 91, 316
AfaI GTAC 2 cut(s) 134, 194
AfiI CCNNNNNNNGG 2 cut(s) 290, 291
AgsI TTSAA 2 cut(s) 175, 208
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 247
AoxI GGCC 1 cut(s) 101
ApaI GGGCCC 1 cut(s) 105
ApoI RAATTY 2 cut(s) 91, 316
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 1 cut(s) 317
Asp718I GGTACC 1 cut(s) 132
AspLEI GCGC 2 cut(s) 14, 16
AspS9I GGNCC 2 cut(s) 101, 102
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 105
BciVI GTATCC 2 cut(s) 133, 252
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 69
BfuI GTATCC 2 cut(s) 133, 252
Bme1390I CCNGG 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 101, 102
BmiI GGNNCC 3 cut(s) 102, 103, 134
BmrFI CCNGG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 291
Bse1I ACTGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 290, 291
BseNI ACTGG 1 cut(s) 41
BsePI GCGCGC 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 59, 137
BslI CCNNNNNNNGG 2 cut(s) 290, 291
BsmAI GTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 69
Bsp120I GGGCCC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 256
BspACI CCGC 3 cut(s) 46, 50, 110
BspANI GGCC 1 cut(s) 103
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 3 cut(s) 102, 103, 134
BspPI GGATC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 256
BssHII GCGCGC 1 cut(s) 12
BssMI GATC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 2 cut(s) 206, 300
BstC8I GCNNGC 2 cut(s) 14, 48
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 2 cut(s) 14, 16
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 112
BsuI GTATCC 2 cut(s) 133, 252
BsuRI GGCC 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 256
BtsCI GGATG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 14, 48
CciI TCATGA 1 cut(s) 321
CfoI GCGC 2 cut(s) 14, 16
Cfr13I GGNCC 2 cut(s) 101, 102
Csp6I GTAC 2 cut(s) 133, 193
CviAII CATG 3 cut(s) 257, 322, 337
CviJI RGCY 1 cut(s) 103
CviKI_1 RGCY 1 cut(s) 103
CviQI GTAC 2 cut(s) 133, 193
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 206, 300
EarI CTCTTC 2 cut(s) 206, 300
Eco130I CCWWGG 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 3 cut(s) 260, 325, 340
FaiI YATR 6 cut(s) 258, 266, 291, 302, 323, 338
FatI CATG 3 cut(s) 256, 321, 336
FauI CCCGC 1 cut(s) 39
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 105
GlaI GCGC 2 cut(s) 13, 15
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 103
HapII CCGG 2 cut(s) 59, 137
HhaI GCGC 2 cut(s) 14, 16
Hin1II CATG 3 cut(s) 260, 325, 340
Hin6I GCGC 2 cut(s) 12, 14
HinP1I GCGC 2 cut(s) 12, 14
HinfI GANTC 2 cut(s) 26, 167
HpaII CCGG 2 cut(s) 59, 137
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 70, 246
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 169, 217
HpyCH4III ACNGT 1 cut(s) 197
Hsp92II CATG 3 cut(s) 260, 325, 340
HspAI GCGC 2 cut(s) 12, 14
KpnI GGTACC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 4 cut(s) 2, 22, 72, 150
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 6 cut(s) 220, 223, 232, 317, 325, 337
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 91, 316
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 48, 144
MnlI CCTC 4 cut(s) 180, 183, 223, 301
MroXI GAANNNNTTC 1 cut(s) 317
MspI CCGG 2 cut(s) 59, 137
MspR9I CCNGG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 253
MvnI CGCG 1 cut(s) 14
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 256
NdeII GATC 1 cut(s) 252
NlaIII CATG 3 cut(s) 260, 325, 340
NlaIV GGNNCC 3 cut(s) 102, 103, 134
PagI TCATGA 1 cut(s) 321
PauI GCGCGC 1 cut(s) 12
PctI GAATGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 167
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 16
PspN4I GGNNCC 3 cut(s) 102, 103, 134
PspOMI GGGCCC 1 cut(s) 101
PspPI GGNCC 2 cut(s) 101, 102
PteI GCGCGC 1 cut(s) 12
RsaI GTAC 2 cut(s) 134, 194
RsaNI GTAC 2 cut(s) 133, 193
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 101, 102
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 105
SetI ASST 4 cut(s) 194, 228, 234, 312
Sse9I AATT 2 cut(s) 91, 316
SsiI CCGC 3 cut(s) 46, 50, 110
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 197
TasI AATT 2 cut(s) 91, 316
TfiI GAWTC 1 cut(s) 167
TscAI CASTG 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 310, 338
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 281
XapI RAATTY 2 cut(s) 91, 316
XmnI GAANNNNTTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.