RchiOBHm_Chr6g0250281

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000184
Physical Location & Seq
Forward (+)
5867747 .. 5868229
483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22435

Sequence Viewer

Length: 432 bp
ATGTTGGCGATTCAGCCGTTTTTTGGCGGAGAAGAGCGGACGGAATCGGAGAAGAGACTGAAGAGTGTGCCGCTGGTGAACGTAGAGCGGACGGACTGGATGTGGAAGGCGTTTTTGCCTGACGGGTCGGATCGGGACCACCCGGTGGTCAATGTGTTCGGGCCGAACGCGGTGGATATTTCGGGGGTGGATTTTCCGGCGACGATTGTGGTTGTTGGGGGATTTGATTTTGATCCGTTGCAGGATTGGCAGAAGAGGTACTACGAGGGATTGAAGAAACGCGGGAAACAAGCGGAGCTGGTGGTGTTTCCGAACGCCATTCATACTTTCTATGCTTATCCCGAGTTGGATGACTCTTCTGTGTTTATTAACCGAGTCAGGGATTTTGTGCAATCGCAATTGGTTAATGCTATTATTGAAACAAGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

143

Amino Acids

16.39

Weight (kDa)

5.15

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 3 - 111 5.8e-18 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 145
AccBSI CCGCTC 2 cut(s) 37, 88
AccII CGCG 2 cut(s) 170, 282
AciI CCGC 7 cut(s) 27, 37, 71, 88, 170, 282, 293
AclWI GGATC 2 cut(s) 138, 227
AcuI CTGAAG 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 145
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 3 cut(s) 23, 145, 379
AgsI TTSAA 2 cut(s) 274, 419
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 2 cut(s) 138, 227
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 136, 161
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 49
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 136, 161
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 231
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 145, 379
Bse1I ACTGG 1 cut(s) 101
Bse8I GATNNNNATC 1 cut(s) 231
BseGI GGATG 2 cut(s) 105, 355
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 3 cut(s) 23, 145, 379
BseNI ACTGG 1 cut(s) 101
Bsh1236I CGCG 2 cut(s) 170, 282
BshFI GGCC 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 143, 197
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 3 cut(s) 23, 145, 379
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 341
Bsp143I GATC 2 cut(s) 130, 232
BspACI CCGC 7 cut(s) 27, 37, 71, 88, 170, 282, 293
BspANI GGCC 1 cut(s) 163
BspFNI CGCG 2 cut(s) 170, 282
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 2 cut(s) 138, 227
BspQI GCTCTTC 1 cut(s) 27
BsrBI CCGCTC 2 cut(s) 37, 88
BsrI ACTGG 1 cut(s) 101
BssMI GATC 2 cut(s) 130, 232
Bst6I CTCTTC 5 cut(s) 27, 47, 56, 248, 361
BstF5I GGATG 2 cut(s) 105, 355
BstFNI CGCG 2 cut(s) 170, 282
BstKTI GATC 2 cut(s) 133, 235
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 130, 232
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 141
BstUI CGCG 2 cut(s) 170, 282
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 105, 355
Cfr13I GGNCC 2 cut(s) 136, 161
Csp6I GTAC 1 cut(s) 259
CviJI RGCY 3 cut(s) 16, 163, 298
CviKI_1 RGCY 3 cut(s) 16, 163, 298
CviQI GTAC 1 cut(s) 259
DpnI GATC 2 cut(s) 132, 234
DpnII GATC 2 cut(s) 130, 232
DraIII CACNNNGTG 1 cut(s) 145
Eam1104I CTCTTC 5 cut(s) 27, 47, 56, 248, 361
EarI CTCTTC 5 cut(s) 27, 47, 56, 248, 361
EciI GGCGGA 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 341
FaiI YATR 2 cut(s) 324, 333
FaqI GGGAC 1 cut(s) 149
FauI CCCGC 1 cut(s) 275
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 2 cut(s) 112, 362
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 1 cut(s) 163
HapII CCGG 2 cut(s) 143, 197
HinfI GANTC 4 cut(s) 10, 44, 353, 375
HpaII CCGG 2 cut(s) 143, 197
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 49, 130, 312
Hpy188III TCNNGA 2 cut(s) 134, 341
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 241, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 81
Kzo9I GATC 2 cut(s) 130, 232
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 8 cut(s) 59, 82, 132, 156, 210, 227, 284, 364
MaeII ACGT 1 cut(s) 81
MalI GATC 2 cut(s) 132, 234
MbiI CCGCTC 2 cut(s) 37, 88
MboI GATC 2 cut(s) 130, 232
MboII GAAGA 6 cut(s) 44, 64, 73, 265, 286, 348
MfeI CAATTG 1 cut(s) 398
MluCI AATT 1 cut(s) 398
MlyI GAGTC 2 cut(s) 347, 384
MmeI TCCRAC 2 cut(s) 108, 327
MnlI CCTC 2 cut(s) 249, 259
MseI TTAA 3 cut(s) 369, 405, 430
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 2 cut(s) 143, 197
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 398
MvnI CGCG 2 cut(s) 170, 282
MwoI GCNNNNNNNGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 143
NdeII GATC 2 cut(s) 130, 232
NlaIV GGNNCC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 10, 44
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 2 cut(s) 347, 383
PpsI GAGTC 2 cut(s) 347, 383
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 2 cut(s) 136, 161
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 3 cut(s) 369, 405, 430
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 2 cut(s) 130, 232
Sau96I GGNCC 2 cut(s) 136, 161
SchI GAGTC 2 cut(s) 347, 384
ScrFI CCNGG 1 cut(s) 143
SetI ASST 3 cut(s) 84, 260, 300
SinI GGWCC 1 cut(s) 136
Sse9I AATT 1 cut(s) 398
SsiI CCGC 7 cut(s) 27, 37, 71, 88, 170, 282, 293
StyD4I CCNGG 1 cut(s) 141
TaiI ACGT 1 cut(s) 84
TasI AATT 1 cut(s) 398
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 2 cut(s) 10, 44
Tru1I TTAA 3 cut(s) 369, 405, 430
Tru9I TTAA 3 cut(s) 369, 405, 430
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 3 cut(s) 56, 107, 225
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.