Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000704.1

Orthogroup ID

OG0000184

Physical Location & Seq

Genomic Coordinates Reverse (-)

30082 .. 30447

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000704.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ctggccggggacagcgccggcgggaacatagcgcaccacgtggctatcggagcgagcgggcacgagtttcgggagctgaaggtggtcggaatgttggcgatacagctgtttttcggtggagaggagcggacggaatcggagacgagattgaagagggtgccgctggtcaacatagagcggacgggctggatgtggaaggcgtttttgccggaggggtccgatcgggaccacccggtggtcaatgtgttcgggccgaacgcggtggatatttcgggggttgattttccggcgacgattgtgtttgttgggggatttgatccagaattgacgaccgcgatgatagccatggcagtcaggatgagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

121

Amino Acids

13.04

Weight (kDa)

5.24

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23530
fragaria_vesca	FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica	MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica	Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis	pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis	RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata	RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora	Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii	Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa	Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha	Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana	Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccBSI	CCGCTC	3 cut(s)	57, 127, 178
AccII	CGCG	2 cut(s)	260, 335
AciI	CCGC	7 cut(s)	21, 57, 127, 161, 178, 260, 333
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	98
AcvI	CACGTG	1 cut(s)	40
AdeI	CACNNNGTG	2 cut(s)	40, 235
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	3 cut(s)	76, 106, 363
AluI	AGCT	3 cut(s)	76, 106, 363
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	2 cut(s)	3, 251
AspLEI	GCGC	2 cut(s)	17, 34
AspS9I	GGNCC	3 cut(s)	216, 226, 251
AsuC2I	CCSGG	2 cut(s)	7, 233
AvaII	GGWCC	2 cut(s)	216, 226
BaeGI	GKGCMC	1 cut(s)	63
BaeI	ACNNNNGTAYC	2 cut(s)	92, 125
BanI	GGYRCC	1 cut(s)	157
BauI	CACGAG	1 cut(s)	62
BbrPI	CACGTG	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BcnI	CCSGG	2 cut(s)	7, 233
BcoDI	GTCTC	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	2 cut(s)	7, 233
Bme18I	GGWCC	2 cut(s)	216, 226
BmgT120I	GGNCC	3 cut(s)	216, 226, 251
BmiI	GGNNCC	3 cut(s)	159, 217, 227
BmrFI	CCNGG	2 cut(s)	7, 233
BpuMI	CCSGG	2 cut(s)	7, 233
BsaAI	YACGTR	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	6, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	6, 345
BseGI	GGATG	2 cut(s)	195, 363
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	63
Bsh1236I	CGCG	2 cut(s)	260, 335
Bsh1285I	CGRYCG	2 cut(s)	223, 333
BshFI	GGCC	2 cut(s)	5, 253
BshNI	GGYRCC	1 cut(s)	157
BsiEI	CGRYCG	2 cut(s)	223, 333
BsiSI	CCGG	5 cut(s)	6, 18, 209, 233, 287
BslFI	GGGAC	2 cut(s)	23, 239
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	23, 239
BsnI	GGCC	2 cut(s)	5, 253
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	220, 316
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	7 cut(s)	21, 57, 127, 161, 178, 260, 333
BspANI	GGCC	2 cut(s)	5, 253
BspFNI	CGCG	2 cut(s)	260, 335
BspLI	GGNNCC	3 cut(s)	159, 217, 227
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	157
BsrBI	CCGCTC	3 cut(s)	57, 127, 178
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	6, 345
BssMI	GATC	2 cut(s)	220, 316
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	3 cut(s)	19, 55, 59
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	195, 363
BstFNI	CGCG	2 cut(s)	260, 335
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 34
BstKTI	GATC	2 cut(s)	223, 319
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	220, 316
BstMCI	CGRYCG	2 cut(s)	223, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 341
BstSCI	CCNGG	2 cut(s)	5, 231
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	2 cut(s)	260, 335
BsuRI	GGCC	2 cut(s)	5, 253
BtgI	CCRYGG	1 cut(s)	345
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	195, 363
Cac8I	GCNNGC	3 cut(s)	19, 55, 59
CfoI	GCGC	2 cut(s)	17, 34
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	3 cut(s)	216, 226, 251
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	8 cut(s)	5, 44, 76, 106, 186, 253, 344, 363
CviKI_1	RGCY	8 cut(s)	5, 44, 76, 106, 186, 253, 344, 363
DpnI	GATC	2 cut(s)	222, 318
DpnII	GATC	2 cut(s)	220, 316
DraIII	CACNNNGTG	2 cut(s)	40, 235
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	216, 226
Eco57I	CTGAAG	1 cut(s)	98
Eco72I	CACGTG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	1 cut(s)	349
FaiI	YATR	3 cut(s)	29, 173, 347
FaqI	GGGAC	2 cut(s)	23, 239
FatI	CATG	1 cut(s)	345
FauI	CCCGC	2 cut(s)	14, 50
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	161
GlaI	GCGC	2 cut(s)	16, 33
GluI	GCNGC	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	5, 253
HapII	CCGG	5 cut(s)	6, 18, 209, 233, 287
HhaI	GCGC	2 cut(s)	17, 34
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	2 cut(s)	15, 32
HinP1I	GCGC	2 cut(s)	15, 32
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	5 cut(s)	6, 18, 209, 233, 287
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	4 cut(s)	50, 89, 139, 220
Hpy188III	TCNNGA	4 cut(s)	71, 224, 320, 355
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	73, 190
HpyCH4IV	ACGT	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 341
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	2 cut(s)	15, 32
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	220, 316
LmnI	GCTCC	3 cut(s)	50, 73, 124
LpnPI	CCDG	9 cut(s)	19, 31, 149, 172, 222, 246, 300, 333, 340
MaeII	ACGT	1 cut(s)	39
MalI	GATC	2 cut(s)	222, 318
MbiI	CCGCTC	3 cut(s)	57, 127, 178
MboI	GATC	2 cut(s)	220, 316
MboII	GAAGA	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	115, 147, 205
MreI	CGCCGGCG	1 cut(s)	17
MroNI	GCCGGC	1 cut(s)	17
MspA1I	CMGCKG	2 cut(s)	106, 163
MspI	CCGG	5 cut(s)	6, 18, 209, 233, 287
MspR9I	CCNGG	2 cut(s)	7, 233
MvnI	CGCG	2 cut(s)	260, 335
MwoI	GCNNNNNNNGC	2 cut(s)	50, 341
NaeI	GCCGGC	1 cut(s)	19
NciI	CCSGG	2 cut(s)	7, 233
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	220, 316
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	3 cut(s)	159, 217, 227
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	162
Ple19I	CGATCG	1 cut(s)	223
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	40
PspN4I	GGNNCC	3 cut(s)	159, 217, 227
PspPI	GGNCC	3 cut(s)	216, 226, 251
PvuI	CGATCG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	106
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	220, 316
Sau96I	GGNCC	3 cut(s)	216, 226, 251
ScrFI	CCNGG	2 cut(s)	7, 233
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	5 cut(s)	42, 78, 84, 108, 365
SgrAI	CRCCGGYG	1 cut(s)	17
SinI	GGWCC	2 cut(s)	216, 226
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	7 cut(s)	21, 57, 127, 161, 178, 260, 333
StyD4I	CCNGG	2 cut(s)	5, 231
StyI	CCWWGG	1 cut(s)	345
TaiI	ACGT	1 cut(s)	42
TasI	AATT	1 cut(s)	323
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	216, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.