RchiOBHm_Chr6g0249211

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000184
Physical Location & Seq
Forward (+)
5102420 .. 5102647
228 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22342

Sequence Viewer

Length: 228 bp
ATGCCATATAGGTATAATTTCATAACAGTGCCGCAGGTGAACGTAGAGCGGACGGACTGGATGTGGAAGGCGTTTTTGCCGGAGGGTTCGAATCGGGACCACCCGGTGGTCAATGTGTTTAGACCGAATGCAGTGGATATTTCGATGGTTGATTTTCCGGTGACGATTGTGGTTGTTGGGGGATTTGATCCTTTGCAAGATTGGCATAAGGGATACTACGAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

75

Amino Acids

8.76

Weight (kDa)

5.03

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 11 - 74 6.7e-10 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 25
AccB7I CCANNNNNTGG 1 cut(s) 106
AccBSI CCGCTC 1 cut(s) 49
AciI CCGC 2 cut(s) 32, 49
AclWI GGATC 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 106
AlwI GGATC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 49, 172
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 97
BccI CCATC 1 cut(s) 139
BciVI GTATCC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 25
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 62
BsiSI CCGG 3 cut(s) 80, 104, 158
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 89
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 2 cut(s) 32, 49
BspLI GGNNCC 1 cut(s) 98
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 1 cut(s) 182
BspT104I TTCGAA 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 62
BssMI GATC 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 89
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 102
BsuI GTATCC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 33, 138
BveI ACCTGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 97
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DraIII CACNNNGTG 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 97
FaiI YATR 5 cut(s) 7, 9, 15, 23, 207
FaqI GGGAC 1 cut(s) 110
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
HapII CCGG 3 cut(s) 80, 104, 158
HinfI GANTC 1 cut(s) 91
HpaII CCGG 3 cut(s) 80, 104, 158
HphI GGTGA 2 cut(s) 49, 172
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 131, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpySE526I ACGT 1 cut(s) 42
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 5 cut(s) 20, 43, 93, 117, 171
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 160
MalI GATC 1 cut(s) 189
MbiI CCGCTC 1 cut(s) 49
MboI GATC 1 cut(s) 187
MluCI AATT 1 cut(s) 16
MnlI CCTC 2 cut(s) 76, 214
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 3 cut(s) 80, 104, 158
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 104
NdeII GATC 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 160
NspV TTCGAA 1 cut(s) 89
PaqCI CACCTGC 1 cut(s) 25
PctI GAATGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 91
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 26
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 104
SetI ASST 3 cut(s) 14, 39, 45
SfuI TTCGAA 1 cut(s) 89
SgeI CNNG 8 cut(s) 47, 70, 92, 107, 115, 116, 170, 209
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 1 cut(s) 16
SsiI CCGC 2 cut(s) 32, 49
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 45
TaqI TCGA 2 cut(s) 89, 143
TaqII GACCGA 1 cut(s) 139
TasI AATT 1 cut(s) 16
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 1 cut(s) 91
TscAI CASTG 2 cut(s) 33, 138
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 10
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 2 cut(s) 33, 138
Van91I CCANNNNNTGG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.