FvH4_2g00440

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000184
Physical Location & Seq
Forward (+)
522456 .. 530651
8196 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00440.t1

Sequence Viewer

Length: 717 bp
ATGTCCGCCGCTTCCAAACCCTACGACGACTTCTGCCAACGCCTCGCCCGCGAGCTCCCCGCTGTCGTCATCTCCGTCAACTACCGCCTCTCCCCGGAGCATCGGTATCCCTCCCAGTACGACGACGGACTCGACGTCCTTAAGTTCATCGACGACCGACAAAACAGCTCCTTGTTCGAGGCCGCGAATCTCGGACACTGCTTTCTTGCCGGGGACAGCGCTGGCGGGAACATAGCGCACCACGTGGCGGTCAGAGCGAGCCGCCACGAGTTCGATAATGTGAAAGTGGTCGGAATGTTGGCGATCCAGCCGTTTTTCGGCGGGGAAGAGAGGACAGAATCGGAGACGAGGCTGAAGAGTGCGCCGATAGTGAACATGGAGAGGACGGACTGGATGTGGAAGGCGTTTTTGCCTGAGGGGTCGGATCGGGACCATCCGGTGGTGAACGTGTTCGGTCCGAACGCGGTGGATATATCGGCGGTGGATTTTCCGGCGACGGTTGTGTTCGTCGGGGGATTTGATCCGTTGCAGGATTGGCAGAGGAGGTACTACGAGGGACTCAAGAAACGCGGGAAGCAAGCGGAGCTGGTGTTTTTTCCCAACGCCATTCACACTTTCTATGCTTATCCCGAGCTGGAGGACTCTTCTGCTTTCATTCACAAAGTCAGGGATTTCGTACAATCCAGATCAGTTGCTGCTACTGATACAGTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

239

Amino Acids

26.81

Weight (kDa)

5.57

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 6 - 207 7.9e-54 alpha/beta hydrolase fold
BD-FAE PF20434 22 - 93 5.5e-08 BD-FAE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 439
AccII CGCG 4 cut(s) 51, 185, 464, 570
AclWI GGATC 3 cut(s) 298, 432, 515
AcuI CTGAAG 1 cut(s) 374
AcvI CACGTG 1 cut(s) 244
AcyI GRCGYC 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 244
AfaI GTAC 4 cut(s) 119, 548, 678, 711
AfeI AGCGCT 1 cut(s) 220
AfiI CCNNNNNNNGG 4 cut(s) 94, 247, 317, 439
AflII CTTAAG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 447
AhdI GACNNNNNGTC 1 cut(s) 134
AluBI AGCT 4 cut(s) 55, 168, 586, 634
AluI AGCT 4 cut(s) 55, 168, 586, 634
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 3 cut(s) 298, 432, 515
AlwNI CAGNNNCTG 1 cut(s) 695
Ama87I CYCGRG 1 cut(s) 629
Aor51HI AGCGCT 1 cut(s) 220
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 695
Asp700I GAANNNNTTC 1 cut(s) 449
AspLEI GCGC 3 cut(s) 221, 238, 364
AspS9I GGNCC 2 cut(s) 430, 455
AsuC2I CCSGG 2 cut(s) 95, 211
AsuHPI GGTGA 1 cut(s) 454
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 2 cut(s) 430, 455
AxyI CCTNAGG 1 cut(s) 414
BanII GRGCYC 1 cut(s) 57
BauI CACGAG 1 cut(s) 266
BbrPI CACGTG 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 682
BccI CCATC 1 cut(s) 441
BceAI ACGGC 1 cut(s) 295
BciVI GTATCC 1 cut(s) 117
BcnI CCSGG 2 cut(s) 95, 211
BcoDI GTCTC 1 cut(s) 338
BfoI RGCGCY 1 cut(s) 222
BfrI CTTAAG 1 cut(s) 140
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 4 cut(s) 9, 183, 262, 696
BlsI GCNGC 4 cut(s) 10, 184, 263, 697
Bme1390I CCNGG 2 cut(s) 95, 211
Bme18I GGWCC 2 cut(s) 430, 455
BmeRI GACNNNNNGTC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 2 cut(s) 430, 455
BmiI GGNNCC 1 cut(s) 431
BmrFI CCNGG 2 cut(s) 95, 211
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 656
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 95, 211
BsaAI YACGTR 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 93, 210
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 6 cut(s) 74, 89, 104, 119, 575, 605
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 247, 317, 439
Bse1I ACTGG 2 cut(s) 115, 395
Bse21I CCTNAGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 93, 210
BseGI GGATG 2 cut(s) 399, 433
BseLI CCNNNNNNNGG 4 cut(s) 94, 247, 317, 439
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 2 cut(s) 115, 395
BseRI GAGGAG 1 cut(s) 556
BseXI GCAGC 1 cut(s) 682
Bsh1236I CGCG 4 cut(s) 51, 185, 464, 570
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 4 cut(s) 95, 210, 437, 491
BslFI GGGAC 3 cut(s) 227, 443, 570
BslI CCNNNNNNNGG 4 cut(s) 94, 247, 317, 439
BsmAI GTCTC 1 cut(s) 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 3 cut(s) 227, 443, 570
BsnI GGCC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 303, 424, 520, 686
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 4 cut(s) 51, 185, 464, 570
BspLI GGNNCC 1 cut(s) 431
BspPI GGATC 3 cut(s) 298, 432, 515
BspTI CTTAAG 1 cut(s) 140
BsrI ACTGG 2 cut(s) 115, 395
BssECI CCNNGG 2 cut(s) 93, 210
BssMI GATC 4 cut(s) 303, 424, 520, 686
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 266
Bst4CI ACNGT 2 cut(s) 499, 709
Bst6I CTCTTC 3 cut(s) 321, 350, 649
BstACI GRCGYC 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 244
BstC8I GCNNGC 5 cut(s) 49, 53, 223, 259, 579
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 399, 433
BstFNI CGCG 4 cut(s) 51, 185, 464, 570
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 3 cut(s) 221, 238, 364
BstKTI GATC 4 cut(s) 306, 427, 523, 689
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 4 cut(s) 303, 424, 520, 686
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 4 cut(s) 48, 254, 535, 583
BstSCI CCNGG 2 cut(s) 93, 209
BstUI CGCG 4 cut(s) 51, 185, 464, 570
BstV1I GCAGC 1 cut(s) 682
Bsu36I CCTNAGG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 2 cut(s) 399, 433
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 5 cut(s) 49, 53, 223, 259, 579
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 3 cut(s) 221, 238, 364
Cfr13I GGNCC 2 cut(s) 430, 455
CpoI CGGWCCG 1 cut(s) 455
Csp6I GTAC 4 cut(s) 118, 547, 677, 710
CspI CGGWCCG 1 cut(s) 455
CviAII CATG 1 cut(s) 376
CviJI RGCY 8 cut(s) 55, 168, 182, 261, 310, 352, 586, 634
CviKI_1 RGCY 8 cut(s) 55, 168, 182, 261, 310, 352, 586, 634
CviQI GTAC 4 cut(s) 118, 547, 677, 710
DdeI CTNAG 1 cut(s) 414
DpnI GATC 4 cut(s) 305, 426, 522, 688
DpnII GATC 4 cut(s) 303, 424, 520, 686
DraIII CACNNNGTG 1 cut(s) 244
DriI GACNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 3 cut(s) 321, 350, 649
Eam1105I GACNNNNNGTC 1 cut(s) 134
EarI CTCTTC 3 cut(s) 321, 350, 649
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 430, 455
Eco47III AGCGCT 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 374
Eco72I CACGTG 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 1 cut(s) 379
FaiI YATR 4 cut(s) 233, 377, 473, 621
FaqI GGGAC 3 cut(s) 227, 443, 570
FatI CATG 1 cut(s) 375
FauI CCCGC 5 cut(s) 56, 67, 218, 314, 563
Fnu4HI GCNGC 4 cut(s) 9, 183, 262, 696
FokI GGATG 2 cut(s) 406, 420
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 4 cut(s) 9, 183, 262, 696
GlaI GCGC 3 cut(s) 220, 237, 363
GluI GCNGC 4 cut(s) 9, 183, 262, 696
GsuI CTGGAG 1 cut(s) 656
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 1 cut(s) 182
HapII CCGG 4 cut(s) 95, 210, 437, 491
HhaI GCGC 3 cut(s) 221, 238, 364
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 1 cut(s) 379
Hin6I GCGC 3 cut(s) 219, 236, 362
HinP1I GCGC 3 cut(s) 219, 236, 362
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 5 cut(s) 129, 187, 338, 558, 641
HpaII CCGG 4 cut(s) 95, 210, 437, 491
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 3 cut(s) 79, 373, 445
Hpy188I TCNGA 6 cut(s) 194, 254, 293, 343, 424, 459
Hpy188III TCNNGA 4 cut(s) 428, 562, 629, 684
Hpy8I GTNNAC 3 cut(s) 79, 373, 445
Hpy99I CGWCG 7 cut(s) 29, 125, 128, 137, 155, 499, 512
HpyAV CCTTC 1 cut(s) 394
HpyCH4III ACNGT 2 cut(s) 499, 709
HpyCH4IV ACGT 3 cut(s) 135, 243, 447
HpyCH4V TGCA 1 cut(s) 529
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 254, 535, 583
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 3 cut(s) 135, 243, 447
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 1 cut(s) 379
HspAI GCGC 3 cut(s) 219, 236, 362
Kzo9I GATC 4 cut(s) 303, 424, 520, 686
LmnI GCTCC 4 cut(s) 60, 97, 173, 583
Lsp1109I GCAGC 1 cut(s) 682
LweI GCATC 1 cut(s) 109
MaeII ACGT 3 cut(s) 135, 243, 447
MalI GATC 4 cut(s) 305, 426, 522, 688
MboI GATC 4 cut(s) 303, 424, 520, 686
MboII GAAGA 3 cut(s) 338, 367, 636
MhlI GDGCHC 1 cut(s) 57
MlyI GAGTC 3 cut(s) 123, 552, 635
MmeI TCCRAC 2 cut(s) 271, 402
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 4 cut(s) 95, 210, 437, 491
MspR9I CCNGG 2 cut(s) 95, 211
MvnI CGCG 4 cut(s) 51, 185, 464, 570
MwoI GCNNNNNNNGC 4 cut(s) 48, 254, 535, 583
NciI CCSGG 2 cut(s) 95, 211
NdeII GATC 4 cut(s) 303, 424, 520, 686
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 129, 132
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 2 cut(s) 187, 338
PflMI CCANNNNNTGG 1 cut(s) 439
PkrI GCNGC 4 cut(s) 10, 184, 263, 697
PleI GAGTC 3 cut(s) 123, 552, 635
PmaCI CACGTG 1 cut(s) 244
PmlI CACGTG 1 cut(s) 244
PpsI GAGTC 3 cut(s) 123, 552, 635
Ppu21I YACGTR 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 57
PspCI CACGTG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 431
PspPI GGNCC 2 cut(s) 430, 455
PstNI CAGNNNCTG 1 cut(s) 695
RsaI GTAC 4 cut(s) 119, 548, 678, 711
RsaNI GTAC 4 cut(s) 118, 547, 677, 710
Rsr2I CGGWCCG 1 cut(s) 455
RsrII CGGWCCG 1 cut(s) 455
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 4 cut(s) 9, 183, 262, 696
Sau3AI GATC 4 cut(s) 303, 424, 520, 686
Sau96I GGNCC 2 cut(s) 430, 455
SchI GAGTC 3 cut(s) 123, 552, 635
ScrFI CCNGG 2 cut(s) 95, 211
SduI GDGCHC 1 cut(s) 57
SetI ASST 8 cut(s) 57, 138, 170, 246, 450, 548, 588, 636
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 2 cut(s) 430, 455
SmlI CTYRAG 2 cut(s) 140, 560
SmoI CTYRAG 2 cut(s) 140, 560
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 93, 209
TaaI ACNGT 2 cut(s) 499, 709
TaiI ACGT 3 cut(s) 138, 246, 450
TaqI TCGA 4 cut(s) 132, 150, 177, 273
TaqII GACCGA 2 cut(s) 171, 443
TatI WGTACW 1 cut(s) 709
TauI GCSGC 3 cut(s) 11, 185, 264
TfiI GAWTC 2 cut(s) 187, 338
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 203
TseI GCWGC 1 cut(s) 695
TspDTI ATGAA 2 cut(s) 136, 643
TspGWI ACGGA 4 cut(s) 64, 141, 401, 513
TspRI CASTG 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 439
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 430, 455
XmnI GAANNNNTTC 1 cut(s) 449
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.